ISMsz1
- Family IS1595
- Group IS1595
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_KE386490 | ND | Methylocaldum szegediense | Methylocaldum szegediense O-12 |
DNA section
IS Length : 1045 bp
Ends
IR Length : 15/16
IRL : CCTGATTAGCGATGAAGttcagtacaggctcacgctgtgagccactaggg
IRR : tctgaTTAGCGATGAACGTCAGCCAAGCGAAGTCGCCACTCGGCTCGGGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACGCCATCTTCA | ATTTCTTT | TTACAAGAAGAA | 8 |
TTCTAATGCTTTTTATTCTTTTT | TTCACTTTTCACTTTTTCACTTT | 0 |
DNA sequence
CCTGATTAGCGATGAAGTTCAGTACAGGCTCACGCTGTGAGCCACTAGGGGGCTTAGACTAGGGGCATCGATCACAAAAGAGGTGTCCCATGCCGATGAA
CCGAGTGCAATTTCAAAAGGGGTTGTCGTTGGCCGAGTTTCTGGCCCAATACGGCCGTGAAGAGCAATGCGAAGCGGCACTGGAAGCCCTACGCTGGCCG
GAGGATTTCCGCTGCCCAGCCTGTGGTGGCGCGCACCACACGGCGTTCGAACGGAGCGGGCGAAAATACTGGCAATGCGGGCACTGCCGAAAGCAAACGA
CGCTGACCGCTGGGACGATCTTCGAAGCGACCAAGCTGCCGCTCTCTACCTGGTTTCTGGCGATGTATCTCCTGACCCAGGCCAAGAACAATGTCTCAGC
ACTGGAATTGATGCGTCATCTCGGAGTGTGTTATCGCACCGCCTGGCTGGTGAAACATAAGCTGATCCAGGTGATGGCGGAGCAGGAAGCGGATCGACAA
TTGACCGGGCGGGTCGAGATTGACGATGCTTACCTGGGCGGTGAACGGTCCGGGAAACGCGGACGGGGTTGCGAAAACAAAGTCAGCTTTGTGATGGCGG
TACAAACCACGGACGACGGTCACCCATGGTTTGTGCGCCTTGATCCCCTGCCGTTCACCCAGCAGGCGATCGCGGACTGGGCCCAACGCGCCTTGGCCCC
GTCGACCTACGCCCTCACCGATGGCCTGAGCGGGTTTCGGAGCGTGCACCAGGTCATCGCGGGGCATCAACGCCTGATTCTGGGCTCTGGGCGGCCATCG
GCCCAACATCCGGCGTTTCGTTGGGTCAACACGCTGTTGAGCAACCTGAAGACCGCCCTTTCCGGCACCTATCATGCGATCAAATTTAGGAAATATGCCA
AGCGATATCTGGCCGAGTTCCAATATCGTTTCAATCGGCGTTTCGATCTCAAAATTCTGCTTCGACGGCTGGCCCGTGCTGCGATGTTGACTCAACCCCG
AGCCGAGTGGCGACTTCGCTTGGCTGACGTTCATCGCTAATCAGA
CCGAGTGCAATTTCAAAAGGGGTTGTCGTTGGCCGAGTTTCTGGCCCAATACGGCCGTGAAGAGCAATGCGAAGCGGCACTGGAAGCCCTACGCTGGCCG
GAGGATTTCCGCTGCCCAGCCTGTGGTGGCGCGCACCACACGGCGTTCGAACGGAGCGGGCGAAAATACTGGCAATGCGGGCACTGCCGAAAGCAAACGA
CGCTGACCGCTGGGACGATCTTCGAAGCGACCAAGCTGCCGCTCTCTACCTGGTTTCTGGCGATGTATCTCCTGACCCAGGCCAAGAACAATGTCTCAGC
ACTGGAATTGATGCGTCATCTCGGAGTGTGTTATCGCACCGCCTGGCTGGTGAAACATAAGCTGATCCAGGTGATGGCGGAGCAGGAAGCGGATCGACAA
TTGACCGGGCGGGTCGAGATTGACGATGCTTACCTGGGCGGTGAACGGTCCGGGAAACGCGGACGGGGTTGCGAAAACAAAGTCAGCTTTGTGATGGCGG
TACAAACCACGGACGACGGTCACCCATGGTTTGTGCGCCTTGATCCCCTGCCGTTCACCCAGCAGGCGATCGCGGACTGGGCCCAACGCGCCTTGGCCCC
GTCGACCTACGCCCTCACCGATGGCCTGAGCGGGTTTCGGAGCGTGCACCAGGTCATCGCGGGGCATCAACGCCTGATTCTGGGCTCTGGGCGGCCATCG
GCCCAACATCCGGCGTTTCGTTGGGTCAACACGCTGTTGAGCAACCTGAAGACCGCCCTTTCCGGCACCTATCATGCGATCAAATTTAGGAAATATGCCA
AGCGATATCTGGCCGAGTTCCAATATCGTTTCAATCGGCGTTTCGATCTCAAAATTCTGCTTCGACGGCTGGCCCGTGCTGCGATGTTGACTCAACCCCG
AGCCGAGTGGCGACTTCGCTTGGCTGACGTTCATCGCTAATCAGA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
951 bp | 316 aa | 90 | 1040 | + | No |
Chemistry : DDE
ORF sequence :
MPMNRVQFQKGLSLAEFLAQYGREEQCEAALEALRWPEDFRCPACGGAHHTAFERSGRKYWQCGHCRKQTTLTAGTIFEATKLPLSTWFLAMYLLTQAKN
NVSALELMRHLGVCYRTAWLVKHKLIQVMAEQEADRQLTGRVEIDDAYLGGERSGKRGRGCENKVSFVMAVQTTDDGHPWFVRLDPLPFTQQAIADWAQR
ALAPSTYALTDGLSGFRSVHQVIAGHQRLILGSGRPSAQHPAFRWVNTLLSNLKTALSGTYHAIKFRKYAKRYLAEFQYRFNRRFDLKILLRRLARAAML
TQPRAEWRLRLADVHR
NVSALELMRHLGVCYRTAWLVKHKLIQVMAEQEADRQLTGRVEIDDAYLGGERSGKRGRGCENKVSFVMAVQTTDDGHPWFVRLDPLPFTQQAIADWAQR
ALAPSTYALTDGLSGFRSVHQVIAGHQRLILGSGRPSAQHPAFRWVNTLLSNLKTALSGTYHAIKFRKYAKRYLAEFQYRFNRRFDLKILLRRLARAAML
TQPRAEWRLRLADVHR
Blast result :
Comments
ISMsz1 is 74% aa similar to ISCARN94.
References
1] Thomas Jové (2016) Direct submission.