ISMeva1
- Family IS5
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP009520 | ND | Methanosarcina vacuolata | Methanosarcina vacuolata Z-761 |
DNA section
IS Length : 1252 bp
Ends
IR Length : 20/40
IRL : GGGACCTAAAAAATCTTATGAAACAATGAGTGTTATAATTGTTTTATTCC
IRR : GGTGCTTTTTTTCTTAACTCTCAGCCAAGTGCTGTAATCCCTTTTTATCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAACTTTAACAATTATTTTA | ATAAATTATTTGTATAAT | 0 |
DNA sequence
GGGACCTAAAAAATCTTATGAAACAATGAGTGTTATAATTGTTTTATTCCCTCAAATAACATGAAATTTAGTTTTCCCTTAAAAAAATACATTCTCTTTT
TGTCTAAAATTTGATTTTACCTCGTTAAAAATCGTAAAATTTATTGAGGAGGATGTATAATCCTCCTTTGGTGTTTGTTTGTGAAACCTCCGCTTATCCC
AATAAACGAAGATTACAAATGGAAATTGCTTTCAGAGATATTAAACGTTTTTGATTTACGATCCACCAAGCAAATTCTTTCACAATATGAAATCTTACCT
CTCGAAAGATCAATACCTGCTCTGAAAATCGTTATTACGAGCATGTATTTCTGCCTTGAGATTTCCTATGTAGTCAGAGAATTGGAAGAAAAGAAGAAAT
TAAGAAAATTTATGAGAATAACATCAGTACCTTCTGAAAATGAAGTATACAGTATCATAAGCAGCTTTGATCCTATGCAGTTTATCAACTTTGTTATTGG
ATTACTTAACAATGTTTGTTCTCAGCGTAAAAGAGGTTTAAGCCATATCATAATCGATAGCACAGACATCAATCTTGATCTTAACTGGTTTAAGAGAAAA
ATTAGCAAAAAGATGTTAGAAGATCGAGAATTTAAATGGGGACACTCTAAGCATCGAGGTTATTTCATAGGGATGAAACTGAGTCTTGCCATAGAATATC
CAAGCTTAAAACCTTTAACTTTCATTATTAATGAAGCAAATGTTAGTGAATACACGGTTTATCCTCAGATTCTAGAAGAGCTAAAGAAAAGGAAGAAAAT
AAGACAAGGAGATGTACTTTATTTCGATAAAGGTTATTTTTCATATGAAAACTATGTAATAGGAATAGCGAAATACAAAATAGTTCCGATTATTTTTCCA
AGGATTAATTGCAATTATAACAAACTTTTCAACATGTTAAGCTATCCTTTGAACATATTTGATTCAAAAAGAAATACGGAAGAAGATAAGAAAATATATA
AAAGACTTGTAGTAAAATTTAAAACTTTGATGGAAAATTGGGGAGGACTTAAGCCTATTAGATCTCTCATTGAGGACATATTTAAATTAGCCAAAAAAAC
GTGCAATATGGAGAATTTACACCGATATACAATGCGTTCTGTAAAAAAGTATTGTTCTTTAGCTGTATTTTTGACAGGGGCAATTACTGCGTTCTTTATT
AGTGATAAAAAGGGATTACAGCACTTGGCTGAGAGTTAAGAAAAAAAGCACC
TGTCTAAAATTTGATTTTACCTCGTTAAAAATCGTAAAATTTATTGAGGAGGATGTATAATCCTCCTTTGGTGTTTGTTTGTGAAACCTCCGCTTATCCC
AATAAACGAAGATTACAAATGGAAATTGCTTTCAGAGATATTAAACGTTTTTGATTTACGATCCACCAAGCAAATTCTTTCACAATATGAAATCTTACCT
CTCGAAAGATCAATACCTGCTCTGAAAATCGTTATTACGAGCATGTATTTCTGCCTTGAGATTTCCTATGTAGTCAGAGAATTGGAAGAAAAGAAGAAAT
TAAGAAAATTTATGAGAATAACATCAGTACCTTCTGAAAATGAAGTATACAGTATCATAAGCAGCTTTGATCCTATGCAGTTTATCAACTTTGTTATTGG
ATTACTTAACAATGTTTGTTCTCAGCGTAAAAGAGGTTTAAGCCATATCATAATCGATAGCACAGACATCAATCTTGATCTTAACTGGTTTAAGAGAAAA
ATTAGCAAAAAGATGTTAGAAGATCGAGAATTTAAATGGGGACACTCTAAGCATCGAGGTTATTTCATAGGGATGAAACTGAGTCTTGCCATAGAATATC
CAAGCTTAAAACCTTTAACTTTCATTATTAATGAAGCAAATGTTAGTGAATACACGGTTTATCCTCAGATTCTAGAAGAGCTAAAGAAAAGGAAGAAAAT
AAGACAAGGAGATGTACTTTATTTCGATAAAGGTTATTTTTCATATGAAAACTATGTAATAGGAATAGCGAAATACAAAATAGTTCCGATTATTTTTCCA
AGGATTAATTGCAATTATAACAAACTTTTCAACATGTTAAGCTATCCTTTGAACATATTTGATTCAAAAAGAAATACGGAAGAAGATAAGAAAATATATA
AAAGACTTGTAGTAAAATTTAAAACTTTGATGGAAAATTGGGGAGGACTTAAGCCTATTAGATCTCTCATTGAGGACATATTTAAATTAGCCAAAAAAAC
GTGCAATATGGAGAATTTACACCGATATACAATGCGTTCTGTAAAAAAGTATTGTTCTTTAGCTGTATTTTTGACAGGGGCAATTACTGCGTTCTTTATT
AGTGATAAAAAGGGATTACAGCACTTGGCTGAGAGTTAAGAAAAAAAGCACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1059 bp | 352 aa | 181 | 1239 | + | No |
Chemistry : DDE
ORF sequence :
MKPPLIPINEDYKWKLLSEILNVFDLRSTKQILSQYEILPLERSIPALKIVITSMYFCLEISYVVRELEEKKKLRKFMRITSVPSENEVYSIISSFDPMQ
FINFVIGLLNNVCSQRKRGLSHIIIDSTDINLDLNWFKRKISKKMLEDREFKWGHSKHRGYFIGMKLSLAIEYPSLKPLTFIINEANVSEYTVYPQILEE
LKKRKKIRQGDVLYFDKGYFSYENYVIGIAKYKIVPIIFPRINCNYNKLFNMLSYPLNIFDSKRNTEEDKKIYKRLVVKFKTLMENWGGLKPIRSLIEDI
FKLAKKTCNMENLHRYTMRSVKKYCSLAVFLTGAITAFFISDKKGLQHLAES
FINFVIGLLNNVCSQRKRGLSHIIIDSTDINLDLNWFKRKISKKMLEDREFKWGHSKHRGYFIGMKLSLAIEYPSLKPLTFIINEANVSEYTVYPQILEE
LKKRKKIRQGDVLYFDKGYFSYENYVIGIAKYKIVPIIFPRINCNYNKLFNMLSYPLNIFDSKRNTEEDKKIYKRLVVKFKTLMENWGGLKPIRSLIEDI
FKLAKKTCNMENLHRYTMRSVKKYCSLAVFLTGAITAFFISDKKGLQHLAES
Blast result :
Comments
ISMeva1 is 79% aa similar to ISMba15.
References
1] ISfinder annotation (2016)
2] Henriksen,J.R., Luke,J., Reinhart,S., Benedict,M.N., Youngblut,N.D., Metcalf,M.E., Whitaker,R.J. and Metcalf,W.W. (2014) Direct submission GenBank.
2] Henriksen,J.R., Luke,J., Reinhart,S., Benedict,M.N., Youngblut,N.D., Metcalf,M.E., Whitaker,R.J. and Metcalf,W.W. (2014) Direct submission GenBank.