ISMeva1

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP009520 ND Methanosarcina vacuolata
Methanosarcina vacuolata Z-761
DNA section
IS Length : 1252 bp

Ends


IR Length : 20/40

IRL : GGGACCTAAAAAATCTTATGAAACAATGAGTGTTATAATTGTTTTATTCC
IRR : GGTGCTTTTTTTCTTAACTCTCAGCCAAGTGCTGTAATCCCTTTTTATCA

Insertion site


Left flankDirect repeatRight flankDR Length
AAACTTTAACAATTATTTTAATAAATTATTTGTATAAT0

DNA sequence

GGGACCTAAAAAATCTTATGAAACAATGAGTGTTATAATTGTTTTATTCCCTCAAATAACATGAAATTTAGTTTTCCCTTAAAAAAATACATTCTCTTTT
TGTCTAAAATTTGATTTTACCTCGTTAAAAATCGTAAAATTTATTGAGGAGGATGTATAATCCTCCTTTGGTGTTTGTTTGTGAAACCTCCGCTTATCCC
AATAAACGAAGATTACAAATGGAAATTGCTTTCAGAGATATTAAACGTTTTTGATTTACGATCCACCAAGCAAATTCTTTCACAATATGAAATCTTACCT
CTCGAAAGATCAATACCTGCTCTGAAAATCGTTATTACGAGCATGTATTTCTGCCTTGAGATTTCCTATGTAGTCAGAGAATTGGAAGAAAAGAAGAAAT
TAAGAAAATTTATGAGAATAACATCAGTACCTTCTGAAAATGAAGTATACAGTATCATAAGCAGCTTTGATCCTATGCAGTTTATCAACTTTGTTATTGG
ATTACTTAACAATGTTTGTTCTCAGCGTAAAAGAGGTTTAAGCCATATCATAATCGATAGCACAGACATCAATCTTGATCTTAACTGGTTTAAGAGAAAA
ATTAGCAAAAAGATGTTAGAAGATCGAGAATTTAAATGGGGACACTCTAAGCATCGAGGTTATTTCATAGGGATGAAACTGAGTCTTGCCATAGAATATC
CAAGCTTAAAACCTTTAACTTTCATTATTAATGAAGCAAATGTTAGTGAATACACGGTTTATCCTCAGATTCTAGAAGAGCTAAAGAAAAGGAAGAAAAT
AAGACAAGGAGATGTACTTTATTTCGATAAAGGTTATTTTTCATATGAAAACTATGTAATAGGAATAGCGAAATACAAAATAGTTCCGATTATTTTTCCA
AGGATTAATTGCAATTATAACAAACTTTTCAACATGTTAAGCTATCCTTTGAACATATTTGATTCAAAAAGAAATACGGAAGAAGATAAGAAAATATATA
AAAGACTTGTAGTAAAATTTAAAACTTTGATGGAAAATTGGGGAGGACTTAAGCCTATTAGATCTCTCATTGAGGACATATTTAAATTAGCCAAAAAAAC
GTGCAATATGGAGAATTTACACCGATATACAATGCGTTCTGTAAAAAAGTATTGTTCTTTAGCTGTATTTTTGACAGGGGCAATTACTGCGTTCTTTATT
AGTGATAAAAAGGGATTACAGCACTTGGCTGAGAGTTAAGAAAAAAAGCACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1059 bp352 aa1811239+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKPPLIPINEDYKWKLLSEILNVFDLRSTKQILSQYEILPLERSIPALKIVITSMYFCLEISYVVRELEEKKKLRKFMRITSVPSENEVYSIISSFDPMQ
FINFVIGLLNNVCSQRKRGLSHIIIDSTDINLDLNWFKRKISKKMLEDREFKWGHSKHRGYFIGMKLSLAIEYPSLKPLTFIINEANVSEYTVYPQILEE
LKKRKKIRQGDVLYFDKGYFSYENYVIGIAKYKIVPIIFPRINCNYNKLFNMLSYPLNIFDSKRNTEEDKKIYKRLVVKFKTLMENWGGLKPIRSLIEDI
FKLAKKTCNMENLHRYTMRSVKKYCSLAVFLTGAITAFFISDKKGLQHLAES

 

Blast result :
Comments
ISMeva1 is 79% aa similar to ISMba15.
References
1] ISfinder annotation (2016)
2] Henriksen,J.R., Luke,J., Reinhart,S., Benedict,M.N., Youngblut,N.D., Metcalf,M.E., Whitaker,R.J. and Metcalf,W.W. (2014) Direct submission GenBank.