ISMets1
- Family IS5
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
JJOW01000201 | ND | Methanosarcina sp. | Methanosarcina sp. 2.H.T.1A.15 |
DNA section
IS Length : 1252 bp
Ends
IR Length : 14/24
IRL : GGGTCCTCTTAAACTCACTCCTTAACTGGAACTTATTTTCCATTTTTTCT
IRR : GCCCCCTCTTCACTTCGTTACTCAGAGAAAGCTTGTAATTCCTTCCTTTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTATTTTTATAAAGAAATATA | TAAAAGAAATAGAATTGTTAAAAAAAA | 0 |
DNA sequence
GGGTCCTCTTAAACTCACTCCTTAACTGGAACTTATTTTCCATTTTTTCTGCCAATTAAGCCAGAGAATAGTTTCCCCAAAAAAAGTACATCTTATTTTT
GATCTAAAATCTAATTAAGACCTTAAAAAACCGTAAATTTTATTGAGGAGGACGTACAATCCTCCTCTGGCGATATATTATGAAAGCTCCGCTTATACCA
CTAAACGAAGATTTCAAATGGAAATTGTTATCCGAAATATTAAACGTTTTTGATCTGAGATCTTGCAGGCAAATTCTCACAAGGAGGGGCATTCTGCCCC
TCCAGAAATCAGTGCCTGCTATTAAAATTGTACTCCTGAGCATGTTTTTTTCCTGTGAAATTTCCTATTCTATCAGAGAATTAAAAGAAAGGGAAAGCTT
GAGAAACTTTTTAAAAATCAGTTCAGTACCAACTGAAAATGAAATTTATGGCGTTCTGAGTAAATATGAACCAAACCAGTTTACTTATTTTGTTTTTGAA
CTCTTGAACGAATTATGCCCTGAGAGAAAAAACGGATCAAGAGGCATTATCATTGACAGTACTGACATAAATCTTAACCTGAATTGGCATGCAAAAAAGA
TTACCAAAAAAAGCCTGGAAAATAAAGAATACAAGTGGGGTCACTCAACACACAGAGGATTCTTCATTGGCATGAAACTGACTCTTGCACTTGAATACCA
AACATTGAAACCTTTAGCGTTTCTGATTAATGAAGCAAATGTACCAGAAACTAAAATTTATCCCGAAATACTTAAAGAACTCAAAAGACGGAGAATATTA
AAAGCAGGAGACATTGTTTATGCTGATAGAGGATACTATTCTTACGAAAACTACGTTATATCTGTCAGAGAGTTCAAAGTGGTACCTTTAATATTCCCAA
GGAAAAACTGTAATTTTAAGAAACTTTTCAATATGCTGAGATATCCTCTGAAAATATTTGATTCAAGAAGAGACACTGAAAAAGAAATAAAAATCTACAA
AGAAATAATTGCAAAATTTAAAGAGTTAATTAGCAAATGGAAAGAGTTCAGACCTGTGAGATCAATCATAGAAGATATATTCAAATTGGCGAAGAAAGCA
TACTCTATGGAGGATTTGCACAGATATACAAGGAGTTCTGTCCAAAAGTACTGCTCTTTAGCTGTACTTTTAGTGGGGATAACTGTAAATTACGGCATTA
AAGAAAGGAAGGAATTACAAGCTTTCTCTGAGTAACGAAGTGAAGAGGGGGC
GATCTAAAATCTAATTAAGACCTTAAAAAACCGTAAATTTTATTGAGGAGGACGTACAATCCTCCTCTGGCGATATATTATGAAAGCTCCGCTTATACCA
CTAAACGAAGATTTCAAATGGAAATTGTTATCCGAAATATTAAACGTTTTTGATCTGAGATCTTGCAGGCAAATTCTCACAAGGAGGGGCATTCTGCCCC
TCCAGAAATCAGTGCCTGCTATTAAAATTGTACTCCTGAGCATGTTTTTTTCCTGTGAAATTTCCTATTCTATCAGAGAATTAAAAGAAAGGGAAAGCTT
GAGAAACTTTTTAAAAATCAGTTCAGTACCAACTGAAAATGAAATTTATGGCGTTCTGAGTAAATATGAACCAAACCAGTTTACTTATTTTGTTTTTGAA
CTCTTGAACGAATTATGCCCTGAGAGAAAAAACGGATCAAGAGGCATTATCATTGACAGTACTGACATAAATCTTAACCTGAATTGGCATGCAAAAAAGA
TTACCAAAAAAAGCCTGGAAAATAAAGAATACAAGTGGGGTCACTCAACACACAGAGGATTCTTCATTGGCATGAAACTGACTCTTGCACTTGAATACCA
AACATTGAAACCTTTAGCGTTTCTGATTAATGAAGCAAATGTACCAGAAACTAAAATTTATCCCGAAATACTTAAAGAACTCAAAAGACGGAGAATATTA
AAAGCAGGAGACATTGTTTATGCTGATAGAGGATACTATTCTTACGAAAACTACGTTATATCTGTCAGAGAGTTCAAAGTGGTACCTTTAATATTCCCAA
GGAAAAACTGTAATTTTAAGAAACTTTTCAATATGCTGAGATATCCTCTGAAAATATTTGATTCAAGAAGAGACACTGAAAAAGAAATAAAAATCTACAA
AGAAATAATTGCAAAATTTAAAGAGTTAATTAGCAAATGGAAAGAGTTCAGACCTGTGAGATCAATCATAGAAGATATATTCAAATTGGCGAAGAAAGCA
TACTCTATGGAGGATTTGCACAGATATACAAGGAGTTCTGTCCAAAAGTACTGCTCTTTAGCTGTACTTTTAGTGGGGATAACTGTAAATTACGGCATTA
AAGAAAGGAAGGAATTACAAGCTTTCTCTGAGTAACGAAGTGAAGAGGGGGC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1056 bp | 351 aa | 180 | 1235 | + | No |
Chemistry : DDE
ORF sequence :
MKAPLIPLNEDFKWKLLSEILNVFDLRSCRQILTRRGILPLQKSVPAIKIVLLSMFFSCEISYSIRELKERESLRNFLKISSVPTENEIYGVLSKYEPNQ
FTYFVFELLNELCPERKNGSRGIIIDSTDINLNLNWHAKKITKKSLENKEYKWGHSTHRGFFIGMKLTLALEYQTLKPLAFLINEANVPETKIYPEILKE
LKRRRILKAGDIVYADRGYYSYENYVISVREFKVVPLIFPRKNCNFKKLFNMLRYPLKIFDSRRDTEKEIKIYKEIIAKFKELISKWKEFRPVRSIIEDI
FKLAKKAYSMEDLHRYTRSSVQKYCSLAVLLVGITVNYGIKERKELQAFSE
FTYFVFELLNELCPERKNGSRGIIIDSTDINLNLNWHAKKITKKSLENKEYKWGHSTHRGFFIGMKLTLALEYQTLKPLAFLINEANVPETKIYPEILKE
LKRRRILKAGDIVYADRGYYSYENYVISVREFKVVPLIFPRKNCNFKKLFNMLRYPLKIFDSRRDTEKEIKIYKEIIAKFKELISKWKEFRPVRSIIEDI
FKLAKKAYSMEDLHRYTRSSVQKYCSLAVLLVGITVNYGIKERKELQAFSE
Blast result :
Comments
ISMets1 is 94% aa similar to ISMba15.
References
1] ISfinder annotation (2016)
2] Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H., Metcalf,W.W. and Whitaker,R.J. (2015) ISME J. Oct;9(10):2191-205
2] Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H., Metcalf,W.W. and Whitaker,R.J. (2015) ISME J. Oct;9(10):2191-205