ISMeth1
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LKCM01000400 | ND | Candidatus Methanoperedens | Candidatus Methanoperedens sp. BLZ1 |
DNA section
IS Length : 1144 bp
Ends
IR Length : 15/16
IRL : TGCTGTGTTGAATAAAGGAAATATTTTGTTCGTACTTGTATGAATAATAT
IRR : TGCTCTGTTGAATAAATCCTCATTTCTCGACTTATCCCACTCCAACCTTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAAGAGGATTTTTCTTTTGG | NNNN | 0 |
DNA sequence
TGCTGTGTTGAATAAAGGAAATATTTTGTTCGTACTTGTATGAATAATATTTATAACCATGTAAATCTTATGTTATCTTCAAAACATTAACAGGAGACTA
TCAACTCAAATAAATGAATTCAAAAAAAGCACAGCAGAAGAAAGAAAAAGTAAAGCAAAAGAGATGGGGCAAAAAATTCGAAGATAAACGAAATTGGAAA
GAGTATAATGAAAAACTGGTTAAACGGGGAGAACTTTATCTCTCCCTTGATTTTCTTGAGAATTGGGATAATGAATTGGATAAAATGAACAAGGACAAAA
AAGGTGCACCCTTCTCATACCCGGAACAGTTTGTTCTATTTATGGCATTTGTATATTCGATATTCCATCTTCCATACAGGCAGCTGGAAGGATTCTTAAG
AAAATTATCCGACTTGATCTCGCGAGACATAGCAGCTGATTACACAACTTTATTCAAACGTATAGCAAAAATGAACATTATACTGCCTGAAACGATTTCT
GAAAAAAAGGAAGATATAGTAATAGCTGTTGATTCCTCTGGTGTGAAAGTTACCAACCGTGGGGAATGGATGAGAGAAAAATGGAAAGTACATAGGGGAT
GGATCAAAGCACATATAGCAATAGACATTAAAACTAAAGAGACTCTTGCTATTGAAATAACAGATGAAACCGTAGCTGATAGCGATAAATTTGATGATCT
TATAAATCAAACAGAACAAAATATAGAAGGCAGGAAAGTAAAACGTGCTTTAGGAGACGGTGGTTATGATGATAAAGATTGTTTCAATACTTTAGATAAA
AAGAAGATAGAGTCCGGGATAAAAACAAGAATTAATGCGAGTACAAAGTCAAGAGGGTCGCCGTATCGAGCTAAGTGTGTAAGAGAAAAGGAAGAACTTG
GTGGTTACAAAGGTTGGCGGGATAAGTATGAATACAGTAAACGCTGGCTTGCAGAAAGCGTACTTTCTGCTGTGAAAAGAATATTTGGTGAAACCGTCAG
AGCGACCAGCATCGACGGAATGTTCAGAGAAACAAAAATGAAGTTTATGTGCTACAATATTCTATTAAACTGCAAATAAAACAAAAAATTTAACGAAGGT
TGGAGTGGGATAAGTCGAGAAATGAGGATTTATTCAACAGAGCA
TCAACTCAAATAAATGAATTCAAAAAAAGCACAGCAGAAGAAAGAAAAAGTAAAGCAAAAGAGATGGGGCAAAAAATTCGAAGATAAACGAAATTGGAAA
GAGTATAATGAAAAACTGGTTAAACGGGGAGAACTTTATCTCTCCCTTGATTTTCTTGAGAATTGGGATAATGAATTGGATAAAATGAACAAGGACAAAA
AAGGTGCACCCTTCTCATACCCGGAACAGTTTGTTCTATTTATGGCATTTGTATATTCGATATTCCATCTTCCATACAGGCAGCTGGAAGGATTCTTAAG
AAAATTATCCGACTTGATCTCGCGAGACATAGCAGCTGATTACACAACTTTATTCAAACGTATAGCAAAAATGAACATTATACTGCCTGAAACGATTTCT
GAAAAAAAGGAAGATATAGTAATAGCTGTTGATTCCTCTGGTGTGAAAGTTACCAACCGTGGGGAATGGATGAGAGAAAAATGGAAAGTACATAGGGGAT
GGATCAAAGCACATATAGCAATAGACATTAAAACTAAAGAGACTCTTGCTATTGAAATAACAGATGAAACCGTAGCTGATAGCGATAAATTTGATGATCT
TATAAATCAAACAGAACAAAATATAGAAGGCAGGAAAGTAAAACGTGCTTTAGGAGACGGTGGTTATGATGATAAAGATTGTTTCAATACTTTAGATAAA
AAGAAGATAGAGTCCGGGATAAAAACAAGAATTAATGCGAGTACAAAGTCAAGAGGGTCGCCGTATCGAGCTAAGTGTGTAAGAGAAAAGGAAGAACTTG
GTGGTTACAAAGGTTGGCGGGATAAGTATGAATACAGTAAACGCTGGCTTGCAGAAAGCGTACTTTCTGCTGTGAAAAGAATATTTGGTGAAACCGTCAG
AGCGACCAGCATCGACGGAATGTTCAGAGAAACAAAAATGAAGTTTATGTGCTACAATATTCTATTAAACTGCAAATAAAACAAAAAATTTAACGAAGGT
TGGAGTGGGATAAGTCGAGAAATGAGGATTTATTCAACAGAGCA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
966 bp | 321 aa | 114 | 1079 | + | No |
Chemistry : DDE
ORF sequence :
MNSKKAQQKKEKVKQKRWGKKFEDKRNWKEYNEKLVKRGELYLSLDFLENWDNELDKMNKDKKGAPFSYPEQFVLFMAFVYSIFHLPYRQLEGFLRKLSD
LISRDIAADYTTLFKRIAKMNIILPETISEKKEDIVIAVDSSGVKVTNRGEWMREKWKVHRGWIKAHIAIDIKTKETLAIEITDETVADSDKFDDLINQT
EQNIEGRKVKRALGDGGYDDKDCFNTLDKKKIESGIKTRINASTKSRGSPYRAKCVREKEELGGYKGWRDKYEYSKRWLAESVLSAVKRIFGETVRATSI
DGMFRETKMKFMCYNILLNCK
LISRDIAADYTTLFKRIAKMNIILPETISEKKEDIVIAVDSSGVKVTNRGEWMREKWKVHRGWIKAHIAIDIKTKETLAIEITDETVADSDKFDDLINQT
EQNIEGRKVKRALGDGGYDDKDCFNTLDKKKIESGIKTRINASTKSRGSPYRAKCVREKEELGGYKGWRDKYEYSKRWLAESVLSAVKRIFGETVRATSI
DGMFRETKMKFMCYNILLNCK
Blast result :
Comments
ISMeth1 is 67% aa similar to ISMth3.
References
1] ISfinder annotation (2016)
2] Arshad,A., Speth,D.R., De Graaf,R.M., Op Den Camp,H.J., Jetten,M.S. and Welte,C.U. (2015) Direct submission GenBank.
2] Arshad,A., Speth,D.R., De Graaf,R.M., Op Den Camp,H.J., Jetten,M.S. and Welte,C.U. (2015) Direct submission GenBank.