ISMeco1
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003243 | ND | Methanocella conradii | Methanocella conradii HZ254 |
DNA section
IS Length : 1062 bp
Ends
IR Length : 23/26
IRL : TGCTTTGTTGAATAAATGGTGGTTTTTAATTGGTTGGTGTGCTTGCGAGG
IRR : TGCTTTGTTGAATAAATTGGGGTATTCTTTTTTGCCTGGTGTTCTTGCGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTTTAAAGT | TCTTTTCC | GTAATATTAA | 8 |
DNA sequence
TGCTTTGTTGAATAAATGGTGGTTTTTAATTGGTTGGTGTGCTTGCGAGGGTATTTGGTTTATGGGTTTTTTGTTGTTTTTATGCGTAAAAAACGTGGGG
GGCGGTGGGGTAAGAAGTACGAGGATAAGCGGGATTGGAAGGAGTATAACGAGGAACTGGTAAGGCGGGGCGAATTGTACTTGAGCCTTGATTTCTTGGA
GCGGTGGGGCGAGGAAGTAAGGAAGATGAACGAGGGGAAGCGGGGTCGGCCCTTTCGTTTCCCGGAGGCGTTCGTAGAATGGATGGCCCTGTTGCACGTG
TGGTTTTTCATGCCCTTCAGGCAGATGGAAGGGTTTCTCAGGGCTTTGTCACAGCACGCCCCCTTGGAGCCGGCTGATTACACGACCCTTTTTAAGAGGA
TAAAGGGTTTGAAACTGGATCTTTCCAGCACTATCGTGGCTGGCAGTGACGTGGTCATAGCCGTGGATAGTACGGGCATTCGTGTTACCAACCGGGGGGA
GTGGATGCGGGAGAAGTGGAACAACCACCGGGGGTGGATCAAGGTGCACCTCAGCGTGGACGTGGAGAGCAAACAAATCCTTGGATTGGAGATAACCAAC
GAGGAGGTCGGCGACGCTGACATGTTCCCCTCGCTGTTAGAGCAGAGCAAGGCCAACTCGAAGGGCGTAATAAAAGTGTTGGCTGACGGCGCCTACGATG
ACAGGCATGCCTTCAACCTCTTGAAAAAAGGCGGGATAGAGTCGGGGATCAAGACGAGAAGCAACGCCAGCACGAAATCCCATGGCTCGCTTTACCGGGC
CCAGTGCGTGAGGGAAAGGCAAAACCTGGGTTACAAGGAGTGGAGCAAAAAGAAGGGCTATGGAAAACGATGGGGCGTAGAAGGCGTCATATCCGTAGTT
AAGAGGATCTTCGGCGAAACCGTGAGAGCGGCCAGCATACAAGGAATGTACCGGGAGATGAGAACAAAACTATTAGCATACAACATACTACTAAACATGA
TATAGGCCAAGCCCGCAAGAACACCAGGCAAAAAAGAATACCCCAATTTATTCAACAAAGCA
GGCGGTGGGGTAAGAAGTACGAGGATAAGCGGGATTGGAAGGAGTATAACGAGGAACTGGTAAGGCGGGGCGAATTGTACTTGAGCCTTGATTTCTTGGA
GCGGTGGGGCGAGGAAGTAAGGAAGATGAACGAGGGGAAGCGGGGTCGGCCCTTTCGTTTCCCGGAGGCGTTCGTAGAATGGATGGCCCTGTTGCACGTG
TGGTTTTTCATGCCCTTCAGGCAGATGGAAGGGTTTCTCAGGGCTTTGTCACAGCACGCCCCCTTGGAGCCGGCTGATTACACGACCCTTTTTAAGAGGA
TAAAGGGTTTGAAACTGGATCTTTCCAGCACTATCGTGGCTGGCAGTGACGTGGTCATAGCCGTGGATAGTACGGGCATTCGTGTTACCAACCGGGGGGA
GTGGATGCGGGAGAAGTGGAACAACCACCGGGGGTGGATCAAGGTGCACCTCAGCGTGGACGTGGAGAGCAAACAAATCCTTGGATTGGAGATAACCAAC
GAGGAGGTCGGCGACGCTGACATGTTCCCCTCGCTGTTAGAGCAGAGCAAGGCCAACTCGAAGGGCGTAATAAAAGTGTTGGCTGACGGCGCCTACGATG
ACAGGCATGCCTTCAACCTCTTGAAAAAAGGCGGGATAGAGTCGGGGATCAAGACGAGAAGCAACGCCAGCACGAAATCCCATGGCTCGCTTTACCGGGC
CCAGTGCGTGAGGGAAAGGCAAAACCTGGGTTACAAGGAGTGGAGCAAAAAGAAGGGCTATGGAAAACGATGGGGCGTAGAAGGCGTCATATCCGTAGTT
AAGAGGATCTTCGGCGAAACCGTGAGAGCGGCCAGCATACAAGGAATGTACCGGGAGATGAGAACAAAACTATTAGCATACAACATACTACTAAACATGA
TATAGGCCAAGCCCGCAAGAACACCAGGCAAAAAAGAATACCCCAATTTATTCAACAAAGCA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
951 bp | 316 aa | 55 | 1005 | + | No |
Chemistry : DDE
ORF sequence :
MVYGFFVVFMRKKRGGRWGKKYEDKRDWKEYNEELVRRGELYLSLDFLERWGEEVRKMNEGKRGRPFRFPEAFVEWMALLHVWFFMPFRQMEGFLRALSQ
HAPLEPADYTTLFKRIKGLKLDLSSTIVAGSDVVIAVDSTGIRVTNRGEWMREKWNNHRGWIKVHLSVDVESKQILGLEITNEEVGDADMFPSLLEQSKA
NSKGVIKVLADGAYDDRHAFNLLKKGGIESGIKTRSNASTKSHGSLYRAQCVRERQNLGYKEWSKKKGYGKRWGVEGVISVVKRIFGETVRAASIQGMYR
EMRTKLLAYNILLNMI
HAPLEPADYTTLFKRIKGLKLDLSSTIVAGSDVVIAVDSTGIRVTNRGEWMREKWNNHRGWIKVHLSVDVESKQILGLEITNEEVGDADMFPSLLEQSKA
NSKGVIKVLADGAYDDRHAFNLLKKGGIESGIKTRSNASTKSHGSLYRAQCVRERQNLGYKEWSKKKGYGKRWGVEGVISVVKRIFGETVRAASIQGMYR
EMRTKLLAYNILLNMI
Blast result :
Comments
ISMeco1 is 66% aa similar to ISMth3.
References
1] ISfinder annotation (2016)
2] Lu,Z. and Lu,Y. (2012) PLoS ONE 7 (4), E35279
3] Lu,Z. and Lu,Y. (2012) J. Bacteriol. 194 (9), 2398-2399
4] Lyu,Z. and Lu,Y. (2015) Environ Microbiol Rep 7 (3), 526-537
2] Lu,Z. and Lu,Y. (2012) PLoS ONE 7 (4), E35279
3] Lu,Z. and Lu,Y. (2012) J. Bacteriol. 194 (9), 2398-2399
4] Lyu,Z. and Lu,Y. (2015) Environ Microbiol Rep 7 (3), 526-537