ISMesp5
- Family ISNCY
- Group ISDol1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AYWO01000011 | ND | Mesorhizobium sp. | Mesorhizobium sp. LNHC252B00 |
DNA section
IS Length : 1764 bp
Ends
IR Length : 19/21
IRL : GTTTCCGTCCATAAACGCCAACATATTGATATTCTTGCGTGAATCGGCAT
IRR : GTTTCCATCCATAAACGCCCATTTTGGTGAGGATTTACAGAGGTTTGCCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GACCCCCCGAATTC TAACCTA | TAGACTA GAGGAGGTGGAGCTG | 0 |
DNA sequence
GTTTCCGTCCATAAACGCCAACATATTGATATTCTTGCGTGAATCGGCATTTTGCGCAGGCAAGGCCCGGCGGTTTCAGGTACACTTTGGTCTCATGCCA
CTGATTCCAAAGCACAATCTGCAACCGCCGGAGCCGACAATGCGCCAAGAACGCACCGTCCAAGCCAGCATATTCGATCTTTTTGCCGCGCACGAGATCG
GCCACGAACTGAAGGCGATGTCGCAGTGGCTGGACGAGCACCCCGACCTGCTTGGCTTGGTGGCGCGAGACCTGGTTCGGAGCAGCGTCAGGGCCACCGG
ACGGCAAGGCCTACCTGCTGAAGCGGTGTTGCGCTGTGCGCTTCTCAAGCAATACCGGCAACTGAGCTATCAGGAACTGGCATTCCACCTCGAGGACTCA
GCCTCATTTCGCGCCTTTGCCCGCCTGCCATGGTCGTGGAGCCCGCAGAAGTCGGTGCTGCAAAAGACGATCAGCGCGATCCGGTCCGACACCTGGGAAG
AGATCAATCGGGCGCTGCTGTCGAATGCCCGGCAGGTAAAACTGGAAGACGGTGCGGTCGTGCGGCTGGACAGCACTGTGACCTCGGCACTCATGCACGA
ACCGAGCGACAGCAGCCTGCTGTGGGACGCTGTGCGGGTCATGGTGCGCCTGTTGAAGCAGGCTGATGCCTTGGCCGGTGGCGCCGGCTTGGAATGGCGA
AATCATTGCCGCGCGGCCAAGAAGCGCGCCCGCAAGATCCAGTTCACACGCGGCCGACCCAACCGCGTCCAACTCTACCGTGAACTGATTGCGATCGCCT
GCGCGACCTTGGCCTATCTGAAGCAGGCCACGGAACGATTGGCCGTGGCGAGCACTCCGCTCATCGCACTGTGGCAGGCCCAGGTTAGTCACCATCGGCC
GCTGATCGAGCAAATCATCGCCCAGAGTGAGCGACGAGTGCTGGCCGGGAACTTGGTGCCGGCCAGCGACAAGCTGGTCAGCCTGTTCGAGCCCCATGCC
GATATCATCGTCAAAGGCAGCCGCGACACCGAATACGGTCACAAACTCAACCTGACCACCGGCAGGAGCGGCATGATCCTCGATCTGGTGATCGAGGCGG
GCAATCCGCGCGACAGCGATCGATTGCTGCCGATGCTGGAACGCCACATCGGCATCTGGGGCCGGGCGCCGCGGCAGGCGGCGGCCGACGGCGGCTTTGC
CAGTCGCGACAATCTGGCTACAGCCAAGACCTTGGGCGTTCGCGACATGGCATTCCACAAGAAAGCCGGCCTCAGGATCGAGGACATGGTTAGAAGCAAT
TGGGTCTACCGCAAGCTGCGCAACTTCCGTGCCGGCATCGAGGCCGACATCTCGTGCCTCAAGCGTGCTTACGGCTTGGCGCGCTGCACCTGGCGCGGCC
TTGATCACTTCAAGAGCTACGTCTGGTCCTCGGTCGTGGCCTACAATCTCGTCCTCTTCACACGTCTCAAACCGACCTGACGGCGAGCCATTGCGCGGGT
CAGCAGCCCGCCGGCAGGCGCCGGCTCCATAGCCACGACTAACTTCCGTTCGGCGAGTTCTATCTGGCGTGATCCATTGGACTTCGCGTCGGCACGGTAC
CGCAAACGACGTTCGTCCTGCGGCAAACCTCTGTAAATCCTCACCAAAATGGGCGTTTATGGATGGAAACTANTCAGAAGATCGACCGCGCGGGCGCAAA
CGACGTTCGTCCTGCGGCAAACCTCTGTAAATCCTCACCAAAATGGGCGTTTATGGATGGAAAC
CTGATTCCAAAGCACAATCTGCAACCGCCGGAGCCGACAATGCGCCAAGAACGCACCGTCCAAGCCAGCATATTCGATCTTTTTGCCGCGCACGAGATCG
GCCACGAACTGAAGGCGATGTCGCAGTGGCTGGACGAGCACCCCGACCTGCTTGGCTTGGTGGCGCGAGACCTGGTTCGGAGCAGCGTCAGGGCCACCGG
ACGGCAAGGCCTACCTGCTGAAGCGGTGTTGCGCTGTGCGCTTCTCAAGCAATACCGGCAACTGAGCTATCAGGAACTGGCATTCCACCTCGAGGACTCA
GCCTCATTTCGCGCCTTTGCCCGCCTGCCATGGTCGTGGAGCCCGCAGAAGTCGGTGCTGCAAAAGACGATCAGCGCGATCCGGTCCGACACCTGGGAAG
AGATCAATCGGGCGCTGCTGTCGAATGCCCGGCAGGTAAAACTGGAAGACGGTGCGGTCGTGCGGCTGGACAGCACTGTGACCTCGGCACTCATGCACGA
ACCGAGCGACAGCAGCCTGCTGTGGGACGCTGTGCGGGTCATGGTGCGCCTGTTGAAGCAGGCTGATGCCTTGGCCGGTGGCGCCGGCTTGGAATGGCGA
AATCATTGCCGCGCGGCCAAGAAGCGCGCCCGCAAGATCCAGTTCACACGCGGCCGACCCAACCGCGTCCAACTCTACCGTGAACTGATTGCGATCGCCT
GCGCGACCTTGGCCTATCTGAAGCAGGCCACGGAACGATTGGCCGTGGCGAGCACTCCGCTCATCGCACTGTGGCAGGCCCAGGTTAGTCACCATCGGCC
GCTGATCGAGCAAATCATCGCCCAGAGTGAGCGACGAGTGCTGGCCGGGAACTTGGTGCCGGCCAGCGACAAGCTGGTCAGCCTGTTCGAGCCCCATGCC
GATATCATCGTCAAAGGCAGCCGCGACACCGAATACGGTCACAAACTCAACCTGACCACCGGCAGGAGCGGCATGATCCTCGATCTGGTGATCGAGGCGG
GCAATCCGCGCGACAGCGATCGATTGCTGCCGATGCTGGAACGCCACATCGGCATCTGGGGCCGGGCGCCGCGGCAGGCGGCGGCCGACGGCGGCTTTGC
CAGTCGCGACAATCTGGCTACAGCCAAGACCTTGGGCGTTCGCGACATGGCATTCCACAAGAAAGCCGGCCTCAGGATCGAGGACATGGTTAGAAGCAAT
TGGGTCTACCGCAAGCTGCGCAACTTCCGTGCCGGCATCGAGGCCGACATCTCGTGCCTCAAGCGTGCTTACGGCTTGGCGCGCTGCACCTGGCGCGGCC
TTGATCACTTCAAGAGCTACGTCTGGTCCTCGGTCGTGGCCTACAATCTCGTCCTCTTCACACGTCTCAAACCGACCTGACGGCGAGCCATTGCGCGGGT
CAGCAGCCCGCCGGCAGGCGCCGGCTCCATAGCCACGACTAACTTCCGTTCGGCGAGTTCTATCTGGCGTGATCCATTGGACTTCGCGTCGGCACGGTAC
CGCAAACGACGTTCGTCCTGCGGCAAACCTCTGTAAATCCTCACCAAAATGGGCGTTTATGGATGGAAACTANTCAGAAGATCGACCGCGCGGGCGCAAA
CGACGTTCGTCCTGCGGCAAACCTCTGTAAATCCTCACCAAAATGGGCGTTTATGGATGGAAAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1341 bp | 446 aa | 140 | 1480 | + | No |
Chemistry : DDE
ORF sequence :
MRQERTVQASIFDLFAAHEIGHELKAMSQWLDEHPDLLGLVARDLVRSSVRATGRQGLPAEAVLRCALLKQYRQLSYQELAFHLEDSASFRAFARLPWSW
SPQKSVLQKTISAIRSDTWEEINRALLSNARQVKLEDGAVVRLDSTVTSALMHEPSDSSLLWDAVRVMVRLLKQADALAGGAGLEWRNHCRAAKKRARKI
QFTRGRPNRVQLYRELIAIACATLAYLKQATERLAVASTPLIALWQAQVSHHRPLIEQIIAQSERRVLAGNLVPASDKLVSLFEPHADIIVKGSRDTEYG
HKLNLTTGRSGMILDLVIEAGNPRDSDRLLPMLERHIGIWGRAPRQAAADGGFASRDNLATAKTLGVRDMAFHKKAGLRIEDMVRSNWVYRKLRNFRAGI
EADISCLKRAYGLARCTWRGLDHFKSYVWSSVVAYNLVLFTRLKPT
SPQKSVLQKTISAIRSDTWEEINRALLSNARQVKLEDGAVVRLDSTVTSALMHEPSDSSLLWDAVRVMVRLLKQADALAGGAGLEWRNHCRAAKKRARKI
QFTRGRPNRVQLYRELIAIACATLAYLKQATERLAVASTPLIALWQAQVSHHRPLIEQIIAQSERRVLAGNLVPASDKLVSLFEPHADIIVKGSRDTEYG
HKLNLTTGRSGMILDLVIEAGNPRDSDRLLPMLERHIGIWGRAPRQAAADGGFASRDNLATAKTLGVRDMAFHKKAGLRIEDMVRSNWVYRKLRNFRAGI
EADISCLKRAYGLARCTWRGLDHFKSYVWSSVVAYNLVLFTRLKPT
Blast result :
Comments
ISMesp5 is 93% aa similar to ISRtr6.
References
1] ISfinder annotation (2016)
2] Porter,S.S., Chang,P.L., Conow,C.A., Dunham,J.P. and Friesen,M.L. (2013) Direct submission GenBank.
2] Porter,S.S., Chang,P.L., Conow,C.A., Dunham,J.P. and Friesen,M.L. (2013) Direct submission GenBank.