ISMesp3
- Family ISNCY
- Group ISDol1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AYWO01000016 | ND | Mesorhizobium sp. | Mesorhizobium sp. LNHC252B00 |
DNA section
IS Length : 1735 bp
Ends
IR Length : 16/17
IRL : GTTTCCGTCCACAAACGGCAAATAATTGATTTTGTTGAGTGAATCGTAGC
IRR : GTTTCCGTCCATAAACGCGCCTATTTTGCAGCTTTTGCAAGCACTTAACC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGACCCTGGAAAC TAGTCTA | TAGCTA GGCCTTGAAGAAGGCCAGC | 0 |
DNA sequence
GTTTCCGTCCACAAACGGCAAATAATTGATTTTGTTGAGTGAATCGTAGCTTTGCATGAGCAAGGCCCGGCGGTTTCAGGTATCTTGGCTCATGCCACTG
AGTCCAAAACCCTGCCACCGCCGGAGCCGACAATGCGCCAAGAACGCACCGTCCAAGCCAGCATATTCGATGTTTTCGCCACGCACGAGATCGGCCACGA
ACTGAAGGCGATGTCGCAATGGCTGGACGAGCATTGCGATCTGCTTGGCCTGGTGGCCGGAGATCTGGTTCGGGTCGGCGTCAAAGCCACCGGACGGCAG
GGCCTGCCGGCCGAAGCGGTGTTGCGCTGCGCGATCCTCAAGCAGTACCGGCAACTGAGCTACCAGGAGCTGGCGTTCCATCTCGAGGACTCCGCCTCGT
TTCGCGCCTTTGCCCGCCTGCCATGGTCGTGGAGCCCACAGAAGTCGGTGCTGCAAAGGACGATCAGCGCGATCCTGCCCGAGACATGGGAATCGATCAA
TCGGACGCTGCTGTCGAGCGCTCAGCAGGCGAAGCTTGAAGACGGCGCGGTCGTGCGGCTGGACAGCACCGTGACTTCGGCACTCATGCACGAGCCGAGC
GACAGCAGCCTGCTTTGGGATGCAGTGCGGGTCATGGTGCGCCTGCTGAAGCGGGCCGATACCTTGGTCGGCGGCGCCGGCTCATGGCGCGATCATTGCC
GTGCAGCCAAGAAGCGCGCCCGCAAGATCCAGTTCACGCGCGGTCGACCGAATCGGGTCCAACTCTACCGCGAGCTGATCGCAATCACCTGCGCGACCTT
GGCCTATCTGAAGCAGGCGAGCGAGCGATTGGCCATGGCGAGCACACCGGCCATCGCACTGTGGCAGCTCCAGGTCCATCACTATGAGCCGTTGGTCGAG
CGCATCATCAGACAGAGCGAGCGACGGGTGTTGGCCGACGAGCCGGTGCCTGCCGGCGAGAAGTTGGTCAGCCTGTTCGAACCACATGCAGATATCATCG
TCAAAGGCAGCCGCAATACCGAGTACGGCCACAAACTCAACCTGACCACTGGCAGGAGCGGCATGATCCTCGATCTGGTGATCGAAGCAGGCAATCCGGC
CGACAGCGAGCGGCTGCTGCCGATGCTGGAGCGCCACATCGCCTTCTACGGCAAAGCGCCGCGGCAAGCGGCGGCCGATGGCGGCTTCGCCACTCGCGAC
AACCTGGCCACAGCGAAGGCGTGGGGCGTCTCCGACATGGCCTTCCACAAGAAGGCCGGGCTCAGGATCGAGGACATGGTCAGAAGCAAGTGGGTCTATC
GCAAGCTACGCAACTTCCGCGCCGGCATCGAAGCCGGAATATCGTGCTTGAAGCGCGCTTACGGCTTGGCACGCTGTACCTGGCGTGGCCTCGATCACTT
CAAGACCTACGTCTGGTCCTCGGCCGTGGCCTACAATCTCGTCCTGTTCACACGCCTCAAACCGAACTGACATCACAGTATCGCCGCTGCCGTCGTGCCG
ATCAGTGACCGGGCTCCGTGGTGCGCGCCGCGACCGGCCCATGATCCCCATTTGTCAACACCGGCGCTCTTGATCCCTGTCCATGCCGTTCAACGGCTTC
ACTGGACGAGGTTAAGTGCTTGCAAAAGCTGCAAAATAGGCGCGTTTATGGACGGAAACTAGNGTTCAACGGCTTCACTGGACGAGGTTAAGTGCTTGCA
AAAGCTGCAAAATAGGCGCGTTTATGGACGGAAAC
AGTCCAAAACCCTGCCACCGCCGGAGCCGACAATGCGCCAAGAACGCACCGTCCAAGCCAGCATATTCGATGTTTTCGCCACGCACGAGATCGGCCACGA
ACTGAAGGCGATGTCGCAATGGCTGGACGAGCATTGCGATCTGCTTGGCCTGGTGGCCGGAGATCTGGTTCGGGTCGGCGTCAAAGCCACCGGACGGCAG
GGCCTGCCGGCCGAAGCGGTGTTGCGCTGCGCGATCCTCAAGCAGTACCGGCAACTGAGCTACCAGGAGCTGGCGTTCCATCTCGAGGACTCCGCCTCGT
TTCGCGCCTTTGCCCGCCTGCCATGGTCGTGGAGCCCACAGAAGTCGGTGCTGCAAAGGACGATCAGCGCGATCCTGCCCGAGACATGGGAATCGATCAA
TCGGACGCTGCTGTCGAGCGCTCAGCAGGCGAAGCTTGAAGACGGCGCGGTCGTGCGGCTGGACAGCACCGTGACTTCGGCACTCATGCACGAGCCGAGC
GACAGCAGCCTGCTTTGGGATGCAGTGCGGGTCATGGTGCGCCTGCTGAAGCGGGCCGATACCTTGGTCGGCGGCGCCGGCTCATGGCGCGATCATTGCC
GTGCAGCCAAGAAGCGCGCCCGCAAGATCCAGTTCACGCGCGGTCGACCGAATCGGGTCCAACTCTACCGCGAGCTGATCGCAATCACCTGCGCGACCTT
GGCCTATCTGAAGCAGGCGAGCGAGCGATTGGCCATGGCGAGCACACCGGCCATCGCACTGTGGCAGCTCCAGGTCCATCACTATGAGCCGTTGGTCGAG
CGCATCATCAGACAGAGCGAGCGACGGGTGTTGGCCGACGAGCCGGTGCCTGCCGGCGAGAAGTTGGTCAGCCTGTTCGAACCACATGCAGATATCATCG
TCAAAGGCAGCCGCAATACCGAGTACGGCCACAAACTCAACCTGACCACTGGCAGGAGCGGCATGATCCTCGATCTGGTGATCGAAGCAGGCAATCCGGC
CGACAGCGAGCGGCTGCTGCCGATGCTGGAGCGCCACATCGCCTTCTACGGCAAAGCGCCGCGGCAAGCGGCGGCCGATGGCGGCTTCGCCACTCGCGAC
AACCTGGCCACAGCGAAGGCGTGGGGCGTCTCCGACATGGCCTTCCACAAGAAGGCCGGGCTCAGGATCGAGGACATGGTCAGAAGCAAGTGGGTCTATC
GCAAGCTACGCAACTTCCGCGCCGGCATCGAAGCCGGAATATCGTGCTTGAAGCGCGCTTACGGCTTGGCACGCTGTACCTGGCGTGGCCTCGATCACTT
CAAGACCTACGTCTGGTCCTCGGCCGTGGCCTACAATCTCGTCCTGTTCACACGCCTCAAACCGAACTGACATCACAGTATCGCCGCTGCCGTCGTGCCG
ATCAGTGACCGGGCTCCGTGGTGCGCGCCGCGACCGGCCCATGATCCCCATTTGTCAACACCGGCGCTCTTGATCCCTGTCCATGCCGTTCAACGGCTTC
ACTGGACGAGGTTAAGTGCTTGCAAAAGCTGCAAAATAGGCGCGTTTATGGACGGAAACTAGNGTTCAACGGCTTCACTGGACGAGGTTAAGTGCTTGCA
AAAGCTGCAAAATAGGCGCGTTTATGGACGGAAAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1338 bp | 445 aa | 133 | 1470 | + | No |
Chemistry : DDE
ORF sequence :
MRQERTVQASIFDVFATHEIGHELKAMSQWLDEHCDLLGLVAGDLVRVGVKATGRQGLPAEAVLRCAILKQYRQLSYQELAFHLEDSASFRAFARLPWSW
SPQKSVLQRTISAILPETWESINRTLLSSAQQAKLEDGAVVRLDSTVTSALMHEPSDSSLLWDAVRVMVRLLKRADTLVGGAGSWRDHCRAAKKRARKIQ
FTRGRPNRVQLYRELIAITCATLAYLKQASERLAMASTPAIALWQLQVHHYEPLVERIIRQSERRVLADEPVPAGEKLVSLFEPHADIIVKGSRNTEYGH
KLNLTTGRSGMILDLVIEAGNPADSERLLPMLERHIAFYGKAPRQAAADGGFATRDNLATAKAWGVSDMAFHKKAGLRIEDMVRSKWVYRKLRNFRAGIE
AGISCLKRAYGLARCTWRGLDHFKTYVWSSAVAYNLVLFTRLKPN
SPQKSVLQRTISAILPETWESINRTLLSSAQQAKLEDGAVVRLDSTVTSALMHEPSDSSLLWDAVRVMVRLLKRADTLVGGAGSWRDHCRAAKKRARKIQ
FTRGRPNRVQLYRELIAITCATLAYLKQASERLAMASTPAIALWQLQVHHYEPLVERIIRQSERRVLADEPVPAGEKLVSLFEPHADIIVKGSRNTEYGH
KLNLTTGRSGMILDLVIEAGNPADSERLLPMLERHIAFYGKAPRQAAADGGFATRDNLATAKAWGVSDMAFHKKAGLRIEDMVRSKWVYRKLRNFRAGIE
AGISCLKRAYGLARCTWRGLDHFKTYVWSSAVAYNLVLFTRLKPN
Blast result :
Comments
ISMesp3 is 92% aa similar to ISRtr6.
References
1] ISfinder annotation (2016)
2] Porter,S.S., Chang,P.L., Conow,C.A., Dunham,J.P. and Friesen,M.L. (2013) Direct submission GenBank.
2] Porter,S.S., Chang,P.L., Conow,C.A., Dunham,J.P. and Friesen,M.L. (2013) Direct submission GenBank.