ISMass1
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
JPXI01000018 | ND | Massilia sp. | Massilia sp. BSC265 |
DNA section
IS Length : 1354 bp
Ends
IR Length : 12/13
IRL : TAATGAGATGGTCACCCTCCACCCTACAAGTTACTAAGCTTGTAGGGTGT
IRR : ----TCTATGGCCACCCTCCTTTTTGCAAGCTGATTTTGTATGATGTAGT
Comments : The IRs are not at the termini as in others IS1111 group members.
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNNN | TTTTCTTGCCCGTTGG | 0 | |
CCGCTGCGGCGGGGTT | NNNNN | 0 |
DNA sequence
TAATGAGATGGTCACCCTCCACCCTACAAGTTACTAAGCTTGTAGGGTGTTTTCATTTTTGGACGGAGGCCATCATGCAAGACGTCGCTCTCATCGGCAT
CGATCTCGGCAAGCACGGCTTTCACGTGCACGGACAGGATCGGCACGGCAAGGCGGTGTTGCGCAGGAAGTTCGACCGCAAGCACCTGATCACGTTTCTC
GCCAACTTCCAGCCTTGCACGATCGTGATGGAAGCCTGTGCCGGCGCCCACTGGATGGCGCGGCAGCTGTCGGCACTTGGCCACGAGGCCAAACTCATTT
CCCCTCAGTTTGTCCGGCCCTTCGTCAAGGGCAACAAGAACGACTTCATCGATGCAGAAGCGATCTGCGAAGCGGCCAGCCGGCCATCAATGCGTTTTGT
CACGCCCAAGACTGAAGCCCAGCAATGCCTGTCGGCCCTGCACCGAACGCGCGAGTCGCTGATGCGCGACCGGGTCAAGGCAATCAACCAGATCCACGCC
TTTCTGCTCGAGTTTGGAATCGGCCTGCCCAAAGGCCCGGCAATCATACGGCGCCTGCCTTCCGTACTGGCAGAGCACGCTCTGCCAGTACGGCTGGTCA
GCCTGATCGAGAGACTGCGTGCCCACATCAAGTATCTCGACGAGCAGCTCGACGAGCTCGAAAAGGAGCTGGGCAGGCAACTGCAGGAAGACGACCTTGG
ACAGCGCCTGATGGCGATTCCTGGCGTCGGACCGATTACTGCGAGCGCCTTGTCGGCCGAGATGGGCGACGGCAAGCAATATGGCTGCGGACGCGATTTC
GCCGCCTCGCTTGGCCTGGTGCCCCAGCAGCACAGTACTGGTGGGAGAGCGAATCTGCTGGGCATTAGCAAACGTGGCGACAAGAATATCCGACGCCTGC
TGGTGCAATGCGCGCGATCCTACATGCGCGGTTTGGACCGGCATACCGACCGCCTGGCGCAGTGGGCCCGCTCCATGCTGGAGCGACGACACTCCAACGT
CGTGGCGTGCGCACTGGCGTACAAGCTGGCCCGCACGGCCTGGGCCATGGCCGCACACCATACCGAATACAAAATGCAAGAGGCCGTCACATCGCTGTGA
CGGCCTCCCGAGCTTGCTGTACCTAACCACCTACTTGGTTTTGCGACGCTGATACTGGATGACGTGAACGGCACACCGGCCTGATGGATAACCTGGCAAA
AAAATCGGCTCATCAAGCCGCAGGTTTTTTTAGGACCATCAGGCGCGAACTCTCATCGTGGCGCGGAGCAAGTCTCCAGCATGACGCCGGATAGATTTGA
GCAAGCCAACTACATCATACAAAATCAGCTTGCAAAAAGGAGGGTGGCCATAGA
CGATCTCGGCAAGCACGGCTTTCACGTGCACGGACAGGATCGGCACGGCAAGGCGGTGTTGCGCAGGAAGTTCGACCGCAAGCACCTGATCACGTTTCTC
GCCAACTTCCAGCCTTGCACGATCGTGATGGAAGCCTGTGCCGGCGCCCACTGGATGGCGCGGCAGCTGTCGGCACTTGGCCACGAGGCCAAACTCATTT
CCCCTCAGTTTGTCCGGCCCTTCGTCAAGGGCAACAAGAACGACTTCATCGATGCAGAAGCGATCTGCGAAGCGGCCAGCCGGCCATCAATGCGTTTTGT
CACGCCCAAGACTGAAGCCCAGCAATGCCTGTCGGCCCTGCACCGAACGCGCGAGTCGCTGATGCGCGACCGGGTCAAGGCAATCAACCAGATCCACGCC
TTTCTGCTCGAGTTTGGAATCGGCCTGCCCAAAGGCCCGGCAATCATACGGCGCCTGCCTTCCGTACTGGCAGAGCACGCTCTGCCAGTACGGCTGGTCA
GCCTGATCGAGAGACTGCGTGCCCACATCAAGTATCTCGACGAGCAGCTCGACGAGCTCGAAAAGGAGCTGGGCAGGCAACTGCAGGAAGACGACCTTGG
ACAGCGCCTGATGGCGATTCCTGGCGTCGGACCGATTACTGCGAGCGCCTTGTCGGCCGAGATGGGCGACGGCAAGCAATATGGCTGCGGACGCGATTTC
GCCGCCTCGCTTGGCCTGGTGCCCCAGCAGCACAGTACTGGTGGGAGAGCGAATCTGCTGGGCATTAGCAAACGTGGCGACAAGAATATCCGACGCCTGC
TGGTGCAATGCGCGCGATCCTACATGCGCGGTTTGGACCGGCATACCGACCGCCTGGCGCAGTGGGCCCGCTCCATGCTGGAGCGACGACACTCCAACGT
CGTGGCGTGCGCACTGGCGTACAAGCTGGCCCGCACGGCCTGGGCCATGGCCGCACACCATACCGAATACAAAATGCAAGAGGCCGTCACATCGCTGTGA
CGGCCTCCCGAGCTTGCTGTACCTAACCACCTACTTGGTTTTGCGACGCTGATACTGGATGACGTGAACGGCACACCGGCCTGATGGATAACCTGGCAAA
AAAATCGGCTCATCAAGCCGCAGGTTTTTTTAGGACCATCAGGCGCGAACTCTCATCGTGGCGCGGAGCAAGTCTCCAGCATGACGCCGGATAGATTTGA
GCAAGCCAACTACATCATACAAAATCAGCTTGCAAAAAGGAGGGTGGCCATAGA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1026 bp | 341 aa | 75 | 1100 | + | No |
Chemistry : DEDD
ORF sequence :
MQDVALIGIDLGKHGFHVHGQDRHGKAVLRRKFDRKHLITFLANFQPCTIVMEACAGAHWMARQLSALGHEAKLISPQFVRPFVKGNKNDFIDAEAICEA
ASRPSMRFVTPKTEAQQCLSALHRTRESLMRDRVKAINQIHAFLLEFGIGLPKGPAIIRRLPSVLAEHALPVRLVSLIERLRAHIKYLDEQLDELEKELG
RQLQEDDLGQRLMAIPGVGPITASALSAEMGDGKQYGCGRDFAASLGLVPQQHSTGGRANLLGISKRGDKNIRRLLVQCARSYMRGLDRHTDRLAQWARS
MLERRHSNVVACALAYKLARTAWAMAAHHTEYKMQEAVTSL
ASRPSMRFVTPKTEAQQCLSALHRTRESLMRDRVKAINQIHAFLLEFGIGLPKGPAIIRRLPSVLAEHALPVRLVSLIERLRAHIKYLDEQLDELEKELG
RQLQEDDLGQRLMAIPGVGPITASALSAEMGDGKQYGCGRDFAASLGLVPQQHSTGGRANLLGISKRGDKNIRRLLVQCARSYMRGLDRHTDRLAQWARS
MLERRHSNVVACALAYKLARTAWAMAAHHTEYKMQEAVTSL
Blast result :
Comments
ISMass1 is 89% aa similar to ISHar6.
References
1] ISfinder submission (2016)
2] Bailey,A.C., Kellom,M., Poret-Peterson,A.T., Noonan,K., Hartnett,H.E. and Raymond,J. (2014) Genome Announc 2 (6).
2] Bailey,A.C., Kellom,M., Poret-Peterson,A.T., Noonan,K., Hartnett,H.E. and Raymond,J. (2014) Genome Announc 2 (6).