ISMyin1
- Family ISNCY
- Group ISDol1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP002275 | ND | Mycobacterium indicus | Mycobacterium indicus pranii MTCC 9506 |
DNA section
IS Length : 1532 bp
Ends
IR Length : 17/18
IRL : CTTCGACCTGAAAAAGTCGGGGTGTGGCGGTGCCTGATCTGGTGTTTGTT
IRR : CTTCGACCTGAAAAAGGCTTGATGGTGACTGCGGCTTGGGCGTGGTCGTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CACAGCCGAC | TAGCTA | GAGCGCCATC | 6 |
DNA sequence
CTTCGACCTGAAAAAGTCGGGGTGTGGCGGTGCCTGATCTGGTGTTTGTTTGAGGCGATGATGGCCTCGAACCCTTGGGCAAGAAGGGATCGAGGCCATC
GTGTTCAGAACTGTAAACGACCAACTGTCGCTATGGGAGGCAATCCTGCCTCCGGAGCTGCTGGTGTTGCCCGGTGAGTTGGCTCGGGTGGACGTGTTGC
TGGATGATCCGGCGTCCGTCGGTGCCGATGGAGACCTATCTACGGATGATGTTCTTGAAGTTCCGCTATCGGCTGGGTTTCGAGTCGTTGTGTCGCGAAG
TGGGCGATTCCATTTCTTGGCAACGGTTCTGCCGTATCCCTTTGGGCACGCGAGTGCCGCATCCGACCACGCTGATGAAGCTGACCAGCCGCTGCGGGGA
GGCCGCGGTGGCTGGGCTCAATGAGGCGTTGTTGACCAAGGCTGCTACGGCGAAGCTGGTCCGCACCGACAAGGTCCGCGCCGACACCACGGTCGTGGAG
GCCGCGGTGGCCTATCCGACTGATTCAGGCCTGTTGGCCAAAGCGGTTGGCGGCATCGCCGCGACGGTGGCGCGGATACAGGCCGCTGGTGGGGCCACCC
GCACCCGGGTGCGGGATCGCAGCCGTTCGGCAGGCCAGCGGGCCCGTTCGATCGCGGCCAAGTTGCGGCTACGTGGTGCGGCGGCCCGCGAGGAGGGCCA
GGCTGCGGTGCTGCGGATCACCGGCCAACTGGCAGATGTCGCCGAGGCCGCCATGACCGACGCCCAGGCCGTGGTGCGCAACGCCCGCCGTGGTCTATCT
CGTGCGACCGGCCGAAGTCGTGGGCGACTGCATCGAGCGATCAACGATCTGGCCACCCTGCTGACACACACTGAGCAGGTGGTGCGCCAGACCCGCAGCA
GATTGGCTGGGGTGATGCCGGATTCGATGAGTCGCATCGTCAGCTTCCACGACGTCGATGCCCGCCCAATCCGCAAGGGCCGACTCGGCAAACCGGTAGA
GTTCGGCTACAAAGCTCAGGTCATCGACAACGCCGACGGGATCATCCTCGACCATGCCGTGCACGTCGGGAACCCTGCCGACGCGCCCCAGCTGGCGCCG
GCGATCGCCCGCATCGCTGAGCGGATCGGGCGTGTGCCCACTGCGGTGACAGCCGATCGTGGCTATGGATACACCTCGGTAGAGATCGATCTGCACGACC
TCGGGGTGCGCCGTGTGGCCATCCCACGAGCCAGCAGACCAGGAGCTGCCCGGCGGGAGTTTGAACACCGAAAAGCGTTCCGCGCCAAGATCAAATGGCG
AACCGGATGCGAGGGCCGGATCAATCACCTCAAACGCAGCTATGGATGGAACCGCACCGAACTGACCACCCTCACCGGAGCACGCACCTGGTGCGGACAC
GGCGTCTTCGCCCATAACCTGGTCAAGATCAGCGCCCTGGCCGCCGGATAGCCAAATCCCGTCCCCACCCGGTCATCCACACCACGACCACGCCCAAGCC
GCAGTCACCATCAAGCCTTTTTCAGGTCGAAG
GTGTTCAGAACTGTAAACGACCAACTGTCGCTATGGGAGGCAATCCTGCCTCCGGAGCTGCTGGTGTTGCCCGGTGAGTTGGCTCGGGTGGACGTGTTGC
TGGATGATCCGGCGTCCGTCGGTGCCGATGGAGACCTATCTACGGATGATGTTCTTGAAGTTCCGCTATCGGCTGGGTTTCGAGTCGTTGTGTCGCGAAG
TGGGCGATTCCATTTCTTGGCAACGGTTCTGCCGTATCCCTTTGGGCACGCGAGTGCCGCATCCGACCACGCTGATGAAGCTGACCAGCCGCTGCGGGGA
GGCCGCGGTGGCTGGGCTCAATGAGGCGTTGTTGACCAAGGCTGCTACGGCGAAGCTGGTCCGCACCGACAAGGTCCGCGCCGACACCACGGTCGTGGAG
GCCGCGGTGGCCTATCCGACTGATTCAGGCCTGTTGGCCAAAGCGGTTGGCGGCATCGCCGCGACGGTGGCGCGGATACAGGCCGCTGGTGGGGCCACCC
GCACCCGGGTGCGGGATCGCAGCCGTTCGGCAGGCCAGCGGGCCCGTTCGATCGCGGCCAAGTTGCGGCTACGTGGTGCGGCGGCCCGCGAGGAGGGCCA
GGCTGCGGTGCTGCGGATCACCGGCCAACTGGCAGATGTCGCCGAGGCCGCCATGACCGACGCCCAGGCCGTGGTGCGCAACGCCCGCCGTGGTCTATCT
CGTGCGACCGGCCGAAGTCGTGGGCGACTGCATCGAGCGATCAACGATCTGGCCACCCTGCTGACACACACTGAGCAGGTGGTGCGCCAGACCCGCAGCA
GATTGGCTGGGGTGATGCCGGATTCGATGAGTCGCATCGTCAGCTTCCACGACGTCGATGCCCGCCCAATCCGCAAGGGCCGACTCGGCAAACCGGTAGA
GTTCGGCTACAAAGCTCAGGTCATCGACAACGCCGACGGGATCATCCTCGACCATGCCGTGCACGTCGGGAACCCTGCCGACGCGCCCCAGCTGGCGCCG
GCGATCGCCCGCATCGCTGAGCGGATCGGGCGTGTGCCCACTGCGGTGACAGCCGATCGTGGCTATGGATACACCTCGGTAGAGATCGATCTGCACGACC
TCGGGGTGCGCCGTGTGGCCATCCCACGAGCCAGCAGACCAGGAGCTGCCCGGCGGGAGTTTGAACACCGAAAAGCGTTCCGCGCCAAGATCAAATGGCG
AACCGGATGCGAGGGCCGGATCAATCACCTCAAACGCAGCTATGGATGGAACCGCACCGAACTGACCACCCTCACCGGAGCACGCACCTGGTGCGGACAC
GGCGTCTTCGCCCATAACCTGGTCAAGATCAGCGCCCTGGCCGCCGGATAGCCAAATCCCGTCCCCACCCGGTCATCCACACCACGACCACGCCCAAGCC
GCAGTCACCATCAAGCCTTTTTCAGGTCGAAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1248 bp | 415 aa | 204 | 1451 | + | No |
Chemistry : DDE
ORF sequence :
MIRRPSVPMETYLRMMFLKFRYRLGFESLCREVGDSISWQRFCRIPLGTRVPHPTTLMKLTSRCGEAAVAGLNEALLTKAATAKLVRTDKVRADTTVVEA
AVAYPTDSGLLAKAVGGIAATVARIQAAGGATRTRVRDRSRSAGQRARSIAAKLRLRGAAAREEGQAAVLRITGQLADVAEAAMTDAQAVVRNARRGLSR
ATGRSRGRLHRAINDLATLLTHTEQVVRQTRSRLAGVMPDSMSRIVSFHDVDARPIRKGRLGKPVEFGYKAQVIDNADGIILDHAVHVGNPADAPQLAPA
IARIAERIGRVPTAVTADRGYGYTSVEIDLHDLGVRRVAIPRASRPGAARREFEHRKAFRAKIKWRTGCEGRINHLKRSYGWNRTELTTLTGARTWCGHG
VFAHNLVKISALAAG
AVAYPTDSGLLAKAVGGIAATVARIQAAGGATRTRVRDRSRSAGQRARSIAAKLRLRGAAAREEGQAAVLRITGQLADVAEAAMTDAQAVVRNARRGLSR
ATGRSRGRLHRAINDLATLLTHTEQVVRQTRSRLAGVMPDSMSRIVSFHDVDARPIRKGRLGKPVEFGYKAQVIDNADGIILDHAVHVGNPADAPQLAPA
IARIAERIGRVPTAVTADRGYGYTSVEIDLHDLGVRRVAIPRASRPGAARREFEHRKAFRAKIKWRTGCEGRINHLKRSYGWNRTELTTLTGARTWCGHG
VFAHNLVKISALAAG
Blast result :
Comments
ISMyin1 is 90% aa similar to ISMav9.
References
1] ISfinder annotation (2015)
2] Ahmed,N., Saini,V., Raghuvanshi,S., Khurana,J.P., Tyagi,A.K., Tyagi,A.K. and Hasnain,S.E. (2007) PLoS ONE 2 (10), E968.
2] Ahmed,N., Saini,V., Raghuvanshi,S., Khurana,J.P., Tyagi,A.K., Tyagi,A.K. and Hasnain,S.E. (2007) PLoS ONE 2 (10), E968.