ISMipa1
- Family ISNCY
- Group ISDol1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CANL01000033 | ND | Microthrix parvicella | Microthrix parvicella RN1 |
DNA section
IS Length : 1629 bp
Ends
IR Length : 17/19
IRL : CTTGCCCCTGAAATAGTCGTGAGATATGTCGTTCAGTGTTGGGGGTGGGT
IRR : CTTGCCCTGAAATAGTGGGTGTGAGGGCCTGGTTGATCAGTGAATTAGCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGGTTTCGCA | TAGCTA | GGACCTTCTG | 6 |
DNA sequence
CTTGCCCCTGAAATAGTCGTGAGATATGTCGTTCAGTGTTGGGGGTGGGTCGATTCGCGTGCGGGAATCTGACAGGCGATGATGGCTCCGATCACAGAAG
TGAAGCCCTGGAGATCGGAGCCATCATCGTGTTGCGTACCGTATGTCCTCAGCCGACGTTGTGGGAATCGTTGTTGCCACCGGAGGCGCTGGTGATGGCC
CCGGAACTGGTCGCGGTTGATCGCCTGTTGGACGACCCGAGGTTCTTTGAGCCGTTCCGTGGGTGGTTCGACCCGGACTTTGGTCGACCGTCGATCCCGA
TGGAGACGTTCCTGCGGTTGATGTTCTTGAAATACCGGTATCGGCTCGGGTTCGGGACGTTGTGCGCTGAGGTGTCCGACTCGTTGAGTTGGCTTCGGTT
CTGTCGGATCCCGCTCGGCCAGCGGGCACCTCACCCGTCCAGGTTGATGAAGATCACCAAACGGATCGGTCCGTCCACGATCGAAGAACTGAACGTTGCT
TTGGTCGGGAAGGCTGTCGAGGCAGGAGTCGTTGATGTGTCCTGGTTGCGGGCCGACGCCACCGTCGTGCCGGCCGACATCAAGTACCCAACCGATTCGG
GGATGCTGACCAAAGGCTGCGCATCGTTGGCACGGCTGGTGGGCCGGATCCGAGACGTCGGGGTGGCATCGCGGACCGTCTTTGATGACCCGACCGAAGC
CGCCCGACGTCACGCACACCGGGTTGCCTCCAAGCTCCGCAAGCGCACAGCCGAAGCCAAAGGCGAGGTGTTGGCGGTCACCGGTGAGCTGGCCGATCTG
GCCGAATCGGTGGTGGCACAGGCCAAACGGGTCCTGAAGAACGCCAAACGAGTCGAGGATCGGCCGGTGCGACGTCTGCGGTCAATGCTCGCCGATCTCG
AACATCTCATCGACGCGGTCGAACAGATCATCGCTCAGACACGGCTCCGGCTCGCTGGAGTCATGCCGGAGTCGAAGACACGACGGGTGTCGCTCTTCGA
CGGTGACGCACGCCCGATCCGGAAAGGATCCCTCGCGAAGCCGACCCAGTTCGGTTACACCGGCCAAGTCACCGACAACCCAGACGGGATCGTGTTGGAC
TACGAACTCGAAGCGGGGATCCCACCCGACGGCCCCCGCCTCGGACCGGCGATCGAGAGGATCATCGCAGCGGTCGGAGCAACTCCCGATGCTGTCACAG
CAGACCGCGGTTACGGCCTCGCATCGGTCGACACCCAGCTCGAAGATCTCGGTGTCGACCTGGTGGCGATTCCCCGCAAAGGTCAACCCGGCACTGCGCG
CCGCGACGCCCAATCCGAGGACCGGTTCGTCGAGTTGGTCAAGTGGCGCACCGGTTCCGAAGGGCGCATAGCCACCCTGAAACGGCAACACGGTTGGGAA
CGAGCCCGCAACCGCGGACTCGAAGGCGCACGGATCTGGTGCGGATGGGGCGTCCTGTCCCACAACCTGGTCAAGATCGCCGGCCTCACCCACTGACCCA
CCCCAAGGTCACACCCCCGAACATCATCCACGCCACTCTGACCGGCCGCGCCCACCAACCCGAACACCCCTCACCGTGAGGCTAATTCACTGATCAACCA
GGCCCTCACACCCACTATTTCAGGGCAAG
TGAAGCCCTGGAGATCGGAGCCATCATCGTGTTGCGTACCGTATGTCCTCAGCCGACGTTGTGGGAATCGTTGTTGCCACCGGAGGCGCTGGTGATGGCC
CCGGAACTGGTCGCGGTTGATCGCCTGTTGGACGACCCGAGGTTCTTTGAGCCGTTCCGTGGGTGGTTCGACCCGGACTTTGGTCGACCGTCGATCCCGA
TGGAGACGTTCCTGCGGTTGATGTTCTTGAAATACCGGTATCGGCTCGGGTTCGGGACGTTGTGCGCTGAGGTGTCCGACTCGTTGAGTTGGCTTCGGTT
CTGTCGGATCCCGCTCGGCCAGCGGGCACCTCACCCGTCCAGGTTGATGAAGATCACCAAACGGATCGGTCCGTCCACGATCGAAGAACTGAACGTTGCT
TTGGTCGGGAAGGCTGTCGAGGCAGGAGTCGTTGATGTGTCCTGGTTGCGGGCCGACGCCACCGTCGTGCCGGCCGACATCAAGTACCCAACCGATTCGG
GGATGCTGACCAAAGGCTGCGCATCGTTGGCACGGCTGGTGGGCCGGATCCGAGACGTCGGGGTGGCATCGCGGACCGTCTTTGATGACCCGACCGAAGC
CGCCCGACGTCACGCACACCGGGTTGCCTCCAAGCTCCGCAAGCGCACAGCCGAAGCCAAAGGCGAGGTGTTGGCGGTCACCGGTGAGCTGGCCGATCTG
GCCGAATCGGTGGTGGCACAGGCCAAACGGGTCCTGAAGAACGCCAAACGAGTCGAGGATCGGCCGGTGCGACGTCTGCGGTCAATGCTCGCCGATCTCG
AACATCTCATCGACGCGGTCGAACAGATCATCGCTCAGACACGGCTCCGGCTCGCTGGAGTCATGCCGGAGTCGAAGACACGACGGGTGTCGCTCTTCGA
CGGTGACGCACGCCCGATCCGGAAAGGATCCCTCGCGAAGCCGACCCAGTTCGGTTACACCGGCCAAGTCACCGACAACCCAGACGGGATCGTGTTGGAC
TACGAACTCGAAGCGGGGATCCCACCCGACGGCCCCCGCCTCGGACCGGCGATCGAGAGGATCATCGCAGCGGTCGGAGCAACTCCCGATGCTGTCACAG
CAGACCGCGGTTACGGCCTCGCATCGGTCGACACCCAGCTCGAAGATCTCGGTGTCGACCTGGTGGCGATTCCCCGCAAAGGTCAACCCGGCACTGCGCG
CCGCGACGCCCAATCCGAGGACCGGTTCGTCGAGTTGGTCAAGTGGCGCACCGGTTCCGAAGGGCGCATAGCCACCCTGAAACGGCAACACGGTTGGGAA
CGAGCCCGCAACCGCGGACTCGAAGGCGCACGGATCTGGTGCGGATGGGGCGTCCTGTCCCACAACCTGGTCAAGATCGCCGGCCTCACCCACTGACCCA
CCCCAAGGTCACACCCCCGAACATCATCCACGCCACTCTGACCGGCCGCGCCCACCAACCCGAACACCCCTCACCGTGAGGCTAATTCACTGATCAACCA
GGCCCTCACACCCACTATTTCAGGGCAAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1461 bp | 486 aa | 36 | 1496 | + | No |
Chemistry : DDE
ORF sequence :
MLGVGRFACGNLTGDDGSDHRSEALEIGAIIVLRTVCPQPTLWESLLPPEALVMAPELVAVDRLLDDPRFFEPFRGWFDPDFGRPSIPMETFLRLMFLKY
RYRLGFGTLCAEVSDSLSWLRFCRIPLGQRAPHPSRLMKITKRIGPSTIEELNVALVGKAVEAGVVDVSWLRADATVVPADIKYPTDSGMLTKGCASLAR
LVGRIRDVGVASRTVFDDPTEAARRHAHRVASKLRKRTAEAKGEVLAVTGELADLAESVVAQAKRVLKNAKRVEDRPVRRLRSMLADLEHLIDAVEQIIA
QTRLRLAGVMPESKTRRVSLFDGDARPIRKGSLAKPTQFGYTGQVTDNPDGIVLDYELEAGIPPDGPRLGPAIERIIAAVGATPDAVTADRGYGLASVDT
QLEDLGVDLVAIPRKGQPGTARRDAQSEDRFVELVKWRTGSEGRIATLKRQHGWERARNRGLEGARIWCGWGVLSHNLVKIAGLTH
RYRLGFGTLCAEVSDSLSWLRFCRIPLGQRAPHPSRLMKITKRIGPSTIEELNVALVGKAVEAGVVDVSWLRADATVVPADIKYPTDSGMLTKGCASLAR
LVGRIRDVGVASRTVFDDPTEAARRHAHRVASKLRKRTAEAKGEVLAVTGELADLAESVVAQAKRVLKNAKRVEDRPVRRLRSMLADLEHLIDAVEQIIA
QTRLRLAGVMPESKTRRVSLFDGDARPIRKGSLAKPTQFGYTGQVTDNPDGIVLDYELEAGIPPDGPRLGPAIERIIAAVGATPDAVTADRGYGLASVDT
QLEDLGVDLVAIPRKGQPGTARRDAQSEDRFVELVKWRTGSEGRIATLKRQHGWERARNRGLEGARIWCGWGVLSHNLVKIAGLTH
Blast result :
Comments
ISMipa1 is 63% aa similar to ISRjo3.
References
1] ISfinder annotation (2015)
2] Jon McIlroy,S., Kristiansen,R., Albertsen,M., Michael Karst,S., Rossetti,S., Lund Nielsen,J., Tandoi,V., James Seviour,R. and Nielsen,P.H.(2013) ISME J 7 (6), 1161-1172.
2] Jon McIlroy,S., Kristiansen,R., Albertsen,M., Michael Karst,S., Rossetti,S., Lund Nielsen,J., Tandoi,V., James Seviour,R. and Nielsen,P.H.(2013) ISME J 7 (6), 1161-1172.