ISMav9
- Family ISNCY
- Group ISDol1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AP012555 | ND | Mycobacterium avium | Mycobacterium avium subsp. hominissuis TH135 |
DNA section
IS Length : 1572 bp
Ends
IR Length : 16
IRL : CTTCGACCTGAAAAAGTCAGCGCGTTGATCCGGGGCGGATCGCGTTTAGC
IRR : CTTCGACCTGAAAAAGGATTGATGCTCGGGCGAGGTTGGTGGCGTTTGGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTCCCGTACA | TAGATA | AGCAGGCGCT | 6 |
CCGACCACAG | TAGCTA | GCACCTGACG | 6 |
DNA sequence
CTTCGACCTGAAAAAGTCAGCGCGTTGATCCGGGGCGGATCGCGTTTAGCTGGGAAGATGGCCTCAATGCCCTTGTTGCGGAAGGGATTGAGGCCATCGT
GTTTCGTACTGTAAACGATCAGCCAACGTTGTGGGATTCGATCCTGCCGTCGGAGTTGTTGGTGTTGCCCGATGAGTTGGCGCGAGTGGACGACCTGCTG
GACGATCCGGTGTTCTTCGCGCCGTTCGTGAGCTATTTCGATCCTGTGATCGGTCGTCCGTCGATTCCGATGGAGACCTATCTGCGGATGATGTTCTTGA
AGTTCCGCTACCGGCTGGGCTATGAGGCGCTGTGCCGCGAAGTGGGCGATTCCATCTCTTGGCAGCGTTTTTGTCGTATCCCGTTGGGGACACGGGTACC
GCACCCGACGACGTTGATGAAGCTGACGAGCCGGTGTGGGGACACCGCGGTGGCCGGCCTCAACGAGGCGTTGTTGGTCAAGGCAACCAGCCAGAAGCTG
CTGCGCACCGACAAGGTCCGTGCGGACACCACCGTGGTGGAAGCCGCCGTGAGCTATCCGACCGACTCGGGTCTGTTGGCCAAGGCGGTGGGGTCGATGA
CCCGCACCATCAAACGCATTCAGGGCGCTGGTGCAGCCACTCGGACTCGGGTGCGTGATCGGCGTCGTTCGGCCGGGCAGCGGGCCCGAGCGATCGCCGC
CAAGCTGCGACTTCGGGGTGCGGCTGCCCGGGAGGAGGGCCAGGCCGCGGTCTTGCGGATCACTGCAGAACTGGCCGGTATCGCTGAGACGGTGATGATC
GATGCCCAGGCGGTGGTGCGCAACGCCCGCCGAGCGCTGCGCACCGTGACCGGGCAGCGTCGAGGACAGCTGCGCCGCGCCGTTGACGAGCTGAAGGCCC
TGCTGGCGCGCACCGGCCGGGTCGTGGAGCAAAGCCGCAGCCGACTGGCCGGGGTGATGCCCGATTCGGCGACTCGGGTGGTCAGTTTCCATGACGTTGA
TGCCCGCCCGATCCGCAAAGGCAGACTCGGCAAGCCGGTGGAATTCGGCTACAAAGCCCAGGTCGTCGACAACGTCGACGGCGTGATCCTTGACCACAGT
GTGGAGATGGGAAACCCGGCAGACGCGCCGCAACTGGCGCCGGCGATCGCACGTATCACCGAGCGAATAGGCCGTGCTCCGACCGCGGTCACCGCTGATC
GCGGCTATGGCTACGCCACGGTGGAAACCGATCTGCACGACCTGGGTGTGCGCAATGTGGCGATCCCACGCGCCAGTAAACCCACCGCCACCCGACGCGA
GTTCGAGCACCGAAAAGCGTTTCGCGCCAAAATCAAATGGCGCACCGGATGCGAAGGCCGGATCAACCACCTCAAACGCAGCTACGGCTGGAACCGCACC
GAACTGACCACCCTGACCGGGGCGCGAACCTGGTGCGGACACGGTGTATTCGCCCACAACCTCGTCAAGATCAGCACCCTGGCCGCATGACCCCCACGAA
CCCGGGACTGGCCGACAGCCCACCCAAACGCCACCAACCTCGCCCGAGCATCAATCCTTTTTCAGGTCGAAG
GTTTCGTACTGTAAACGATCAGCCAACGTTGTGGGATTCGATCCTGCCGTCGGAGTTGTTGGTGTTGCCCGATGAGTTGGCGCGAGTGGACGACCTGCTG
GACGATCCGGTGTTCTTCGCGCCGTTCGTGAGCTATTTCGATCCTGTGATCGGTCGTCCGTCGATTCCGATGGAGACCTATCTGCGGATGATGTTCTTGA
AGTTCCGCTACCGGCTGGGCTATGAGGCGCTGTGCCGCGAAGTGGGCGATTCCATCTCTTGGCAGCGTTTTTGTCGTATCCCGTTGGGGACACGGGTACC
GCACCCGACGACGTTGATGAAGCTGACGAGCCGGTGTGGGGACACCGCGGTGGCCGGCCTCAACGAGGCGTTGTTGGTCAAGGCAACCAGCCAGAAGCTG
CTGCGCACCGACAAGGTCCGTGCGGACACCACCGTGGTGGAAGCCGCCGTGAGCTATCCGACCGACTCGGGTCTGTTGGCCAAGGCGGTGGGGTCGATGA
CCCGCACCATCAAACGCATTCAGGGCGCTGGTGCAGCCACTCGGACTCGGGTGCGTGATCGGCGTCGTTCGGCCGGGCAGCGGGCCCGAGCGATCGCCGC
CAAGCTGCGACTTCGGGGTGCGGCTGCCCGGGAGGAGGGCCAGGCCGCGGTCTTGCGGATCACTGCAGAACTGGCCGGTATCGCTGAGACGGTGATGATC
GATGCCCAGGCGGTGGTGCGCAACGCCCGCCGAGCGCTGCGCACCGTGACCGGGCAGCGTCGAGGACAGCTGCGCCGCGCCGTTGACGAGCTGAAGGCCC
TGCTGGCGCGCACCGGCCGGGTCGTGGAGCAAAGCCGCAGCCGACTGGCCGGGGTGATGCCCGATTCGGCGACTCGGGTGGTCAGTTTCCATGACGTTGA
TGCCCGCCCGATCCGCAAAGGCAGACTCGGCAAGCCGGTGGAATTCGGCTACAAAGCCCAGGTCGTCGACAACGTCGACGGCGTGATCCTTGACCACAGT
GTGGAGATGGGAAACCCGGCAGACGCGCCGCAACTGGCGCCGGCGATCGCACGTATCACCGAGCGAATAGGCCGTGCTCCGACCGCGGTCACCGCTGATC
GCGGCTATGGCTACGCCACGGTGGAAACCGATCTGCACGACCTGGGTGTGCGCAATGTGGCGATCCCACGCGCCAGTAAACCCACCGCCACCCGACGCGA
GTTCGAGCACCGAAAAGCGTTTCGCGCCAAAATCAAATGGCGCACCGGATGCGAAGGCCGGATCAACCACCTCAAACGCAGCTACGGCTGGAACCGCACC
GAACTGACCACCCTGACCGGGGCGCGAACCTGGTGCGGACACGGTGTATTCGCCCACAACCTCGTCAAGATCAGCACCCTGGCCGCATGACCCCCACGAA
CCCGGGACTGGCCGACAGCCCACCCAAACGCCACCAACCTCGCCCGAGCATCAATCCTTTTTCAGGTCGAAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1362 bp | 453 aa | 129 | 1490 | + | No |
Chemistry : DDE
ORF sequence :
MWDSILPSELLVLPDELARVDDLLDDPVFFAPFVSYFDPVIGRPSIPMETYLRMMFLKFRYRLGYEALCREVGDSISWQRFCRIPLGTRVPHPTTLMKLT
SRCGDTAVAGLNEALLVKATSQKLLRTDKVRADTTVVEAAVSYPTDSGLLAKAVGSMTRTIKRIQGAGAATRTRVRDRRRSAGQRARAIAAKLRLRGAAA
REEGQAAVLRITAELAGIAETVMIDAQAVVRNARRALRTVTGQRRGQLRRAVDELKALLARTGRVVEQSRSRLAGVMPDSATRVVSFHDVDARPIRKGRL
GKPVEFGYKAQVVDNVDGVILDHSVEMGNPADAPQLAPAIARITERIGRAPTAVTADRGYGYATVETDLHDLGVRNVAIPRASKPTATRREFEHRKAFRA
KIKWRTGCEGRINHLKRSYGWNRTELTTLTGARTWCGHGVFAHNLVKISTLAA
SRCGDTAVAGLNEALLVKATSQKLLRTDKVRADTTVVEAAVSYPTDSGLLAKAVGSMTRTIKRIQGAGAATRTRVRDRRRSAGQRARAIAAKLRLRGAAA
REEGQAAVLRITAELAGIAETVMIDAQAVVRNARRALRTVTGQRRGQLRRAVDELKALLARTGRVVEQSRSRLAGVMPDSATRVVSFHDVDARPIRKGRL
GKPVEFGYKAQVVDNVDGVILDHSVEMGNPADAPQLAPAIARITERIGRAPTAVTADRGYGYATVETDLHDLGVRNVAIPRASKPTATRREFEHRKAFRA
KIKWRTGCEGRINHLKRSYGWNRTELTTLTGARTWCGHGVFAHNLVKISTLAA
Blast result :
Comments
ISMav9 is 74% aa similar to ISRjo3.
References
1] ISfinder annotation (2015)
2] Uchiya,K., Takahashi,H., Yagi,T., Moriyama,M., Inagaki,T., Ichikawa,K., Nakagawa,T., Nikai,T. and Ogawa,K. (2013) PLoS ONE 8 (8), E71831.
2] Uchiya,K., Takahashi,H., Yagi,T., Moriyama,M., Inagaki,T., Ichikawa,K., Nakagawa,T., Nikai,T. and Ogawa,K. (2013) PLoS ONE 8 (8), E71831.