ISMno29
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001349 | ND | Methylobacterium nodulans | Methylobacterium nodulans ORS 2060 Methylobacterium nodulans ORS 2060 plasmid pMNOD02 |
DNA section
IS Length : 1192 bp
Ends
Left end : CGCTCCCTCTTGCATGTTTGACGGGCCGACCAGCGCACCAAGCTGTGAGGTGCGTCGCGGCCGGTGGCCACCGGCCGCGACGCGGGCGGCCGGGATCGAT
Right end : CAAGCTCGCCGTGCTGGCCAACAGCCTCATCGCTCAGGACCGCCTCTGGACGCCAAATCAGCCCCAACAGGCTTGACGCCAAACACAGATGCTTTCCCGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCGCTCTTCC | ATCTCCTTCC | 0 | |
GATCTCCGCC | ATCTCCTTCC | 0 | |
CTGCAGTCGT | CGAAGGGGCG | 0 | |
CTGCAGTCGT | GGCGACGAGA | 0 | |
CTGCATGCGC | GGAGGCCGGG | 0 | |
CGCCCCTTCG | ACGACTGCAG | 0 | |
GGAATGCGAC | GGCGACAGTA | 0 | |
CCTTCGCGCA | ACGTCTGCAG | 0 | |
CTGCAGTCGT | CGAAGGGGCG | 0 | |
CGCCCCTTCG | ATCGCATTCC | 0 | |
CCGACCCTGA | ACGACTGCAG | 0 | |
CTGCAGTCGT | GGAAGAGCGG | 0 | |
TCTCCGCCCC | ACGACTGCAG | 0 | |
CTCCAGTCGT | GAGGGGGTCG | 0 | |
CGCCCCTTCG | ACGTCTGCAG | 0 |
DNA sequence
CGCTCCCTCTTGCATGTTTGACGGGCCGACCAGCGCACCAAGCTGTGAGGTGCGTCGCGGCCGGTGGCCACCGGCCGCGACGCGGGCGGCCGGGATCGAT
CTCCCTCTAGGATTGGCACCGTGGGAAAGCAGGATCCGGCCGCCCTCTGGCTCTTGTCCTGAACAGATGCTGGGGAGCAAGTCCCGTATGCAAGGCAAGG
AAGTGTCCAAACAAGAGACCGCGGGCAAGTCTAGCGTGGGGATCGACGTCAGCAAGAGCTGGCTCGACGTCCACGTCCTCCCCTCCGGCCAAGCCCAGCG
GTTCGCCAATACCGAGGTCGGCATCCGGCAGCTCAAGCGCTGGCTTGGGCGCTTTGCTCTGGGGCTGGTCGTGGTCGAGGCCACCGGCAAGTGGCACCGC
CAGACCCGCCGCAGCCTGCATGCCTCGGGCCTGCCGGTCGCCGTCGTCGATCCGTTTCGGGTGCGCATGTTCGCCAAGGCGCAAGGCATCTGGGCCAAGA
CCGATCGGCTCGATGCCCGCGTGCTGGCGCAGTTTGCCGCGGTGATGGCCCCCCCGCAGCGCCCGCCGGCCTCGGACGCGCTCGAAGCGCTCCAGGAACT
GGTCGCGGCCCGCGACAGCGCCGTGGCCGAACAAACCGCCCTCAAGAACCAGCTGGCCGCGGCCGCAAGCCCGTTCCTGATCCGCCAGCTCCAGGACCGT
CTGGCCAGGATCGCCGCGGACATCGAGGCCCTTGCCGGCGAGATCCGCCGGCTCATCGCGGCCGATCCCGGACTGGCCCGGCGGCATGCCATCCTGGTCT
CGATCCCCTCGATCGGGGACACGATCGCGGCCACCCTGGTGGCCAGCCTGGCCGAGCTGGGCACCTGCAGCAGCCGGCAGATCGGCCTGCTGGCGGGCCT
GGCGCCGGTCGCCGACGATTCCGGCGCGCGCCAGGGCGTGCGGGTCATCTGGGGCGGCCGCCCGCCCGTGCGCCGCGTCCTCTACCTCGCGGCGCTCTCG
GCCGCCCGCCACAACGCCGGCCTGAAAGCCTTCCACGAACGCCTGATCGCCAACGGCAAGAAGCCAAAGTGCGCCATCATCGCCGTGGCCCGCAAGCTCG
CCGTGCTGGCCAACAGCCTCATCGCTCAGGACCGCCTCTGGACGCCAAATCAGCCCCAACAGGCTTGACGCCAAACACAGATGCTTTCCCGG
CTCCCTCTAGGATTGGCACCGTGGGAAAGCAGGATCCGGCCGCCCTCTGGCTCTTGTCCTGAACAGATGCTGGGGAGCAAGTCCCGTATGCAAGGCAAGG
AAGTGTCCAAACAAGAGACCGCGGGCAAGTCTAGCGTGGGGATCGACGTCAGCAAGAGCTGGCTCGACGTCCACGTCCTCCCCTCCGGCCAAGCCCAGCG
GTTCGCCAATACCGAGGTCGGCATCCGGCAGCTCAAGCGCTGGCTTGGGCGCTTTGCTCTGGGGCTGGTCGTGGTCGAGGCCACCGGCAAGTGGCACCGC
CAGACCCGCCGCAGCCTGCATGCCTCGGGCCTGCCGGTCGCCGTCGTCGATCCGTTTCGGGTGCGCATGTTCGCCAAGGCGCAAGGCATCTGGGCCAAGA
CCGATCGGCTCGATGCCCGCGTGCTGGCGCAGTTTGCCGCGGTGATGGCCCCCCCGCAGCGCCCGCCGGCCTCGGACGCGCTCGAAGCGCTCCAGGAACT
GGTCGCGGCCCGCGACAGCGCCGTGGCCGAACAAACCGCCCTCAAGAACCAGCTGGCCGCGGCCGCAAGCCCGTTCCTGATCCGCCAGCTCCAGGACCGT
CTGGCCAGGATCGCCGCGGACATCGAGGCCCTTGCCGGCGAGATCCGCCGGCTCATCGCGGCCGATCCCGGACTGGCCCGGCGGCATGCCATCCTGGTCT
CGATCCCCTCGATCGGGGACACGATCGCGGCCACCCTGGTGGCCAGCCTGGCCGAGCTGGGCACCTGCAGCAGCCGGCAGATCGGCCTGCTGGCGGGCCT
GGCGCCGGTCGCCGACGATTCCGGCGCGCGCCAGGGCGTGCGGGTCATCTGGGGCGGCCGCCCGCCCGTGCGCCGCGTCCTCTACCTCGCGGCGCTCTCG
GCCGCCCGCCACAACGCCGGCCTGAAAGCCTTCCACGAACGCCTGATCGCCAACGGCAAGAAGCCAAAGTGCGCCATCATCGCCGTGGCCCGCAAGCTCG
CCGTGCTGGCCAACAGCCTCATCGCTCAGGACCGCCTCTGGACGCCAAATCAGCCCCAACAGGCTTGACGCCAAACACAGATGCTTTCCCGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
981 bp | 326 aa | 188 | 1168 | + | No |
Chemistry : DEDD
ORF sequence :
MQGKEVSKQETAGKSSVGIDVSKSWLDVHVLPSGQAQRFANTEVGIRQLKRWLGRFALGLVVVEATGKWHRQTRRSLHASGLPVAVVDPFRVRMFAKAQG
IWAKTDRLDARVLAQFAAVMAPPQRPPASDALEALQELVAARDSAVAEQTALKNQLAAAASPFLIRQLQDRLARIAADIEALAGEIRRLIAADPGLARRH
AILVSIPSIGDTIAATLVASLAELGTCSSRQIGLLAGLAPVADDSGARQGVRVIWGGRPPVRRVLYLAALSAARHNAGLKAFHERLIANGKKPKCAIIAV
ARKLAVLANSLIAQDRLWTPNQPQQA
IWAKTDRLDARVLAQFAAVMAPPQRPPASDALEALQELVAARDSAVAEQTALKNQLAAAASPFLIRQLQDRLARIAADIEALAGEIRRLIAADPGLARRH
AILVSIPSIGDTIAATLVASLAELGTCSSRQIGLLAGLAPVADDSGARQGVRVIWGGRPPVRRVLYLAALSAARHNAGLKAFHERLIANGKKPKCAIIAV
ARKLAVLANSLIAQDRLWTPNQPQQA
Blast result :
Comments
ISMno29 is 57% a similar to ISHne5.
References
1] Ming-Chun Lee and David Robinson, direct submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.