ISMno29

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001349 ND Methylobacterium nodulans
Methylobacterium nodulans ORS 2060
Methylobacterium nodulans ORS 2060 plasmid pMNOD02
DNA section
IS Length : 1192 bp

Ends


Left end : CGCTCCCTCTTGCATGTTTGACGGGCCGACCAGCGCACCAAGCTGTGAGGTGCGTCGCGGCCGGTGGCCACCGGCCGCGACGCGGGCGGCCGGGATCGAT
Right end : CAAGCTCGCCGTGCTGGCCAACAGCCTCATCGCTCAGGACCGCCTCTGGACGCCAAATCAGCCCCAACAGGCTTGACGCCAAACACAGATGCTTTCCCGG

Insertion site


Left flankDirect repeatRight flankDR Length
CCGCTCTTCCATCTCCTTCC0
GATCTCCGCCATCTCCTTCC0
CTGCAGTCGTCGAAGGGGCG0
CTGCAGTCGTGGCGACGAGA0
CTGCATGCGCGGAGGCCGGG0
CGCCCCTTCGACGACTGCAG0
GGAATGCGACGGCGACAGTA0
CCTTCGCGCAACGTCTGCAG0
CTGCAGTCGTCGAAGGGGCG0
CGCCCCTTCGATCGCATTCC0
CCGACCCTGAACGACTGCAG0
CTGCAGTCGTGGAAGAGCGG0
TCTCCGCCCCACGACTGCAG0
CTCCAGTCGTGAGGGGGTCG0
CGCCCCTTCGACGTCTGCAG0

DNA sequence

CGCTCCCTCTTGCATGTTTGACGGGCCGACCAGCGCACCAAGCTGTGAGGTGCGTCGCGGCCGGTGGCCACCGGCCGCGACGCGGGCGGCCGGGATCGAT
CTCCCTCTAGGATTGGCACCGTGGGAAAGCAGGATCCGGCCGCCCTCTGGCTCTTGTCCTGAACAGATGCTGGGGAGCAAGTCCCGTATGCAAGGCAAGG
AAGTGTCCAAACAAGAGACCGCGGGCAAGTCTAGCGTGGGGATCGACGTCAGCAAGAGCTGGCTCGACGTCCACGTCCTCCCCTCCGGCCAAGCCCAGCG
GTTCGCCAATACCGAGGTCGGCATCCGGCAGCTCAAGCGCTGGCTTGGGCGCTTTGCTCTGGGGCTGGTCGTGGTCGAGGCCACCGGCAAGTGGCACCGC
CAGACCCGCCGCAGCCTGCATGCCTCGGGCCTGCCGGTCGCCGTCGTCGATCCGTTTCGGGTGCGCATGTTCGCCAAGGCGCAAGGCATCTGGGCCAAGA
CCGATCGGCTCGATGCCCGCGTGCTGGCGCAGTTTGCCGCGGTGATGGCCCCCCCGCAGCGCCCGCCGGCCTCGGACGCGCTCGAAGCGCTCCAGGAACT
GGTCGCGGCCCGCGACAGCGCCGTGGCCGAACAAACCGCCCTCAAGAACCAGCTGGCCGCGGCCGCAAGCCCGTTCCTGATCCGCCAGCTCCAGGACCGT
CTGGCCAGGATCGCCGCGGACATCGAGGCCCTTGCCGGCGAGATCCGCCGGCTCATCGCGGCCGATCCCGGACTGGCCCGGCGGCATGCCATCCTGGTCT
CGATCCCCTCGATCGGGGACACGATCGCGGCCACCCTGGTGGCCAGCCTGGCCGAGCTGGGCACCTGCAGCAGCCGGCAGATCGGCCTGCTGGCGGGCCT
GGCGCCGGTCGCCGACGATTCCGGCGCGCGCCAGGGCGTGCGGGTCATCTGGGGCGGCCGCCCGCCCGTGCGCCGCGTCCTCTACCTCGCGGCGCTCTCG
GCCGCCCGCCACAACGCCGGCCTGAAAGCCTTCCACGAACGCCTGATCGCCAACGGCAAGAAGCCAAAGTGCGCCATCATCGCCGTGGCCCGCAAGCTCG
CCGTGCTGGCCAACAGCCTCATCGCTCAGGACCGCCTCTGGACGCCAAATCAGCCCCAACAGGCTTGACGCCAAACACAGATGCTTTCCCGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
981 bp326 aa1881168+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MQGKEVSKQETAGKSSVGIDVSKSWLDVHVLPSGQAQRFANTEVGIRQLKRWLGRFALGLVVVEATGKWHRQTRRSLHASGLPVAVVDPFRVRMFAKAQG
IWAKTDRLDARVLAQFAAVMAPPQRPPASDALEALQELVAARDSAVAEQTALKNQLAAAASPFLIRQLQDRLARIAADIEALAGEIRRLIAADPGLARRH
AILVSIPSIGDTIAATLVASLAELGTCSSRQIGLLAGLAPVADDSGARQGVRVIWGGRPPVRRVLYLAALSAARHNAGLKAFHERLIANGKKPKCAIIAV
ARKLAVLANSLIAQDRLWTPNQPQQA

 

Blast result :
Comments
ISMno29 is 57% a similar to ISHne5.
References
1] Ming-Chun Lee and David Robinson, direct submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.