ISMdi14B
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FP103042 | ND | Methylobacterium dichloromethanicum | Methylobacterium dichloromethanicum DM4 Methylobacterium extorquens DM4 |
DNA section
IS Length : 1315 bp
Ends
IR Length : 15
IRL : tcgggtAATGGGCGGCAGCTCTTCTGCGGAAGTCGATAGGATCGGCTCCG
IRR : ---gtcAATGGGCGGCAGCTCAATCCAGAGCGTTCGACGCTTTCGGGTGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTTTCAACA | TCATTAGAGA | 0 |
DNA sequence
TCGGGTAATGGGCGGCAGCTCTTCTGCGGAAGTCGATAGGATCGGCTCCGCTGCCGGAAGAGGAGGCTGATTATGGAGTATTTCGCTGGCCTAGATGTCT
CGATGGAGGAGACGCACGTCTGCGTGGTCGACCGCGACGGAGTAGTTGCCCATCAGGCGAAGGTGGCCTCTACGCCTGCCGACATCGCGCAGGAACTCGC
GAAGGCGCCTGCCTGCCGTCGGGTTGTGTTCGAGACAGGCCGGATGGCTCCAATGCTGTTCCACGGCTTGGCCGACCATGGTGTGCCGGTCGTCTGCGCC
GAGAGCCGGCAGGCTTACCAAGCCTTGAAGTCGCTTACGACGCACAAGACCGACCGGAACGATGCGCGCGGTCTGGCTCATCTGGCACGAACAGGCTTCT
TCAAGCCGGTGCACGTGAAGTCGCTGCCGGCACACGCCGTGAGGTCGTTGATCATCGCGCGCAAGAAGCTGGTCGGCCAGCGGGTCACGCTGGAGAACCA
GATCCGCGGTCTTGCCGTCGTGTTCGGGGTGCGGCTACCGCGGGCGCTCAGCCCTGCGTTCATCGAGCAGGCTCTGCGTTCGAGCGAGGGGATCGCTGGA
CTGTCCGCCGCCATGCGCGGCCTGATCGGAGCACGAGCTGCCGTGCTGGCAGCTGTCGCCGCCATCGATGCAGATATCAAGCGGATGGTCCGAGCCTCAG
ATGCCTGCCGGCGGTTGATGACGATCCCGGGCGTCGGTCAACTCACCGCGCTCGCTTTCACGGCAGCCGTCGATGATCCTGAGCGCTTCAGGCGCTCCCG
CGACGTCGGTCCGTATCTTGGCCTTGTTCCGCGACGCTACCAATCGGGCGAGGTCGACTACACCGGTAGCATCTCGAAGTGCGGCGACCGGCGGGTCAGA
ACGCTGCTGTACGAAGCCGCCAACGTGATGCTGACGCGCTGCAGGCAGCCCCTGAAGCTGAAGGCTTGGGCTCTGGCCATCGCGAAGCGCTCTACGATGC
GCAAGGCCCGCATCGCTCTCGCGCGCCGGCTAGCGATCATCATGCACGCGATGCTGCGGCAGGGCACCGAGTTCCGACCTGCGTAGCGGCTGACATCACC
GGACAGGAGGCCGAACCGAGCTCCCGAGCGGGAGCGACGCCCGAGGGAGGGAGCAGAAGATGGCGCCGATTCTGTAGCATGCGGCCTTGCGCCGACTGCG
CTTTCAACCGAGCCGCTTTGCACCCAGCTGACCCCATCAAGTGCCGCACGAGCACGTAGAGAACGCAGGCACCCGAAAGCGTCGAACGCTCTGGATTGAG
CTGCCGCCCATTGAC
CGATGGAGGAGACGCACGTCTGCGTGGTCGACCGCGACGGAGTAGTTGCCCATCAGGCGAAGGTGGCCTCTACGCCTGCCGACATCGCGCAGGAACTCGC
GAAGGCGCCTGCCTGCCGTCGGGTTGTGTTCGAGACAGGCCGGATGGCTCCAATGCTGTTCCACGGCTTGGCCGACCATGGTGTGCCGGTCGTCTGCGCC
GAGAGCCGGCAGGCTTACCAAGCCTTGAAGTCGCTTACGACGCACAAGACCGACCGGAACGATGCGCGCGGTCTGGCTCATCTGGCACGAACAGGCTTCT
TCAAGCCGGTGCACGTGAAGTCGCTGCCGGCACACGCCGTGAGGTCGTTGATCATCGCGCGCAAGAAGCTGGTCGGCCAGCGGGTCACGCTGGAGAACCA
GATCCGCGGTCTTGCCGTCGTGTTCGGGGTGCGGCTACCGCGGGCGCTCAGCCCTGCGTTCATCGAGCAGGCTCTGCGTTCGAGCGAGGGGATCGCTGGA
CTGTCCGCCGCCATGCGCGGCCTGATCGGAGCACGAGCTGCCGTGCTGGCAGCTGTCGCCGCCATCGATGCAGATATCAAGCGGATGGTCCGAGCCTCAG
ATGCCTGCCGGCGGTTGATGACGATCCCGGGCGTCGGTCAACTCACCGCGCTCGCTTTCACGGCAGCCGTCGATGATCCTGAGCGCTTCAGGCGCTCCCG
CGACGTCGGTCCGTATCTTGGCCTTGTTCCGCGACGCTACCAATCGGGCGAGGTCGACTACACCGGTAGCATCTCGAAGTGCGGCGACCGGCGGGTCAGA
ACGCTGCTGTACGAAGCCGCCAACGTGATGCTGACGCGCTGCAGGCAGCCCCTGAAGCTGAAGGCTTGGGCTCTGGCCATCGCGAAGCGCTCTACGATGC
GCAAGGCCCGCATCGCTCTCGCGCGCCGGCTAGCGATCATCATGCACGCGATGCTGCGGCAGGGCACCGAGTTCCGACCTGCGTAGCGGCTGACATCACC
GGACAGGAGGCCGAACCGAGCTCCCGAGCGGGAGCGACGCCCGAGGGAGGGAGCAGAAGATGGCGCCGATTCTGTAGCATGCGGCCTTGCGCCGACTGCG
CTTTCAACCGAGCCGCTTTGCACCCAGCTGACCCCATCAAGTGCCGCACGAGCACGTAGAGAACGCAGGCACCCGAAAGCGTCGAACGCTCTGGATTGAG
CTGCCGCCCATTGAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1014 bp | 337 aa | 73 | 1086 | + | No |
Chemistry : DEDD
ORF sequence :
MEYFAGLDVSMEETHVCVVDRDGVVAHQAKVASTPADIAQELAKAPACRRVVFETGRMAPMLFHGLADHGVPVVCAESRQAYQALKSLTTHKTDRNDARG
LAHLARTGFFKPVHVKSLPAHAVRSLIIARKKLVGQRVTLENQIRGLAVVFGVRLPRALSPAFIEQALRSSEGIAGLSAAMRGLIGARAAVLAAVAAIDA
DIKRMVRASDACRRLMTIPGVGQLTALAFTAAVDDPERFRRSRDVGPYLGLVPRRYQSGEVDYTGSISKCGDRRVRTLLYEAANVMLTRCRQPLKLKAWA
LAIAKRSTMRKARIALARRLAIIMHAMLRQGTEFRPA
LAHLARTGFFKPVHVKSLPAHAVRSLIIARKKLVGQRVTLENQIRGLAVVFGVRLPRALSPAFIEQALRSSEGIAGLSAAMRGLIGARAAVLAAVAAIDA
DIKRMVRASDACRRLMTIPGVGQLTALAFTAAVDDPERFRRSRDVGPYLGLVPRRYQSGEVDYTGSISKCGDRRVRTLLYEAANVMLTRCRQPLKLKAWA
LAIAKRSTMRKARIALARRLAIIMHAMLRQGTEFRPA
Blast result :
Comments
ISMdi14B is 96% aa similar to ISMdi14.
References
1] Stéphane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. PLoS ONE Submitted.