ISMae40
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010296 | ND | Microcystis aeruginosa | Microcystis aeruginosa NIES-843 Microcystis aeruginosa 9808 |
DNA section
IS Length : 1300 bp
Ends
Left end : TGTATCTTGAGAAGTAGGCAACCCGTCCCAACCTAGGTAAAAAATACCGCTTTGTAGCTTGGGTGCCTATATTCTGAAAAAGGGCGTGGACATCCAGTTC
Right end : TTTCATCGCTGACAAAACGGATGACTGGTGCCGTTACTTTGTCTTGCCTATTTGGGGTACAAAAGATTTTCTTTATTCCCCTTGACTTTTAAGACAATCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AACCCAACCT | CTACGTTCAT | 0 |
DNA sequence
TGTATCTTGAGAAGTAGGCAACCCGTCCCAACCTAGGTAAAAAATACCGCTTTGTAGCTTGGGTGCCTATATTCTGAAAAAGGGCGTGGACATCCAGTTC
AACCGAGGTGCTTGACACCGTTGGGTAGCCACCGGAGCCACGCCGTCATCCCGATGAGACAAGCTCGAACAATCGCTGGAGGATTAACCTCGTATTCGCA
AGGACGAGTTACCAAAGGGACAAAATAACTTAACCCCAGCATAAACGATGACAGAAGAAAAAACATGGGTAGGGATCGATGTCAGTAAAGAGGTTCTAGA
TATCTACGTGTTGCCGCAAGGTCTGACCTTGCAACAACCCAACAGCGAGGTTGGCGTTCAATCGCTGATTGAACAATTACATCCTCTCTCACCGAGTTTG
GTGGTGGTGGAATCGACGGGTGGATTAGAGCGCGCGCTCGTATCGGGCTTACAAGCCGCCACAATACCGGTAGCGATCGCCAACCCCCGCAAGGTCAAAG
GGTTTGCGACGGCATTGGGGAAAGCAAAAACGGACAAATTGGACGCACAGGTAATCGCTCAATTCGCACGAGCCGTGCAACCCCAACCCCAACCCGTGGT
TGCCCCCCAAGCCCAACAATTGAGCGACCTAGTACGACGACGACAGCAGTTGGTGGAGATGCAGGTGGCGGAGAAAAACCGCCTCAGTCGTGCGTCTGAG
ACGGTGCAACTAGATATCAAAGCCCATATTGAGGAAATCCAACAGCGTATTGAAAGCCTCAACGAGCAGATTCAGTCCCTCGCCCAACAGCAAGCCGATT
GGCAACGCAAAAATGAAATCTTACAATCCGTTAAAGGGATCGGCAAAGTTTCATCTGCCCTATGTTTGGCGGAATTACCCGAGATGGGAACACTCTCGGA
AAAACAGATTGCCCGGCTGGTCGGGGTCGCTCCTATCAACCACGATAGTGGCCAGCACAAGGGTAAACGCATGATTTCGGGGGGACGCACCTCGGTTCGC
TGTGGCTTGTACATGGCCACATTGGTAGCCATTCGTCATAACCCGGTGATTCGGAAGTTCTACGAACGGTTGTTGACCAATGGCAAGTTGAAAAAGGTGG
CCTTAGTTGCCTGTATGAGGAAATTGCTGGTTATCCTCAATGCCATGATTCGTGATAATAAATGCTGGCAAGCACCCGCTTAGTCCAGTTTTCCGAACAA
TTTCATCGCTGACAAAACGGATGACTGGTGCCGTTACTTTGTCTTGCCTATTTGGGGTACAAAAGATTTTCTTTATTCCCCTTGACTTTTAAGACAATCG
AACCGAGGTGCTTGACACCGTTGGGTAGCCACCGGAGCCACGCCGTCATCCCGATGAGACAAGCTCGAACAATCGCTGGAGGATTAACCTCGTATTCGCA
AGGACGAGTTACCAAAGGGACAAAATAACTTAACCCCAGCATAAACGATGACAGAAGAAAAAACATGGGTAGGGATCGATGTCAGTAAAGAGGTTCTAGA
TATCTACGTGTTGCCGCAAGGTCTGACCTTGCAACAACCCAACAGCGAGGTTGGCGTTCAATCGCTGATTGAACAATTACATCCTCTCTCACCGAGTTTG
GTGGTGGTGGAATCGACGGGTGGATTAGAGCGCGCGCTCGTATCGGGCTTACAAGCCGCCACAATACCGGTAGCGATCGCCAACCCCCGCAAGGTCAAAG
GGTTTGCGACGGCATTGGGGAAAGCAAAAACGGACAAATTGGACGCACAGGTAATCGCTCAATTCGCACGAGCCGTGCAACCCCAACCCCAACCCGTGGT
TGCCCCCCAAGCCCAACAATTGAGCGACCTAGTACGACGACGACAGCAGTTGGTGGAGATGCAGGTGGCGGAGAAAAACCGCCTCAGTCGTGCGTCTGAG
ACGGTGCAACTAGATATCAAAGCCCATATTGAGGAAATCCAACAGCGTATTGAAAGCCTCAACGAGCAGATTCAGTCCCTCGCCCAACAGCAAGCCGATT
GGCAACGCAAAAATGAAATCTTACAATCCGTTAAAGGGATCGGCAAAGTTTCATCTGCCCTATGTTTGGCGGAATTACCCGAGATGGGAACACTCTCGGA
AAAACAGATTGCCCGGCTGGTCGGGGTCGCTCCTATCAACCACGATAGTGGCCAGCACAAGGGTAAACGCATGATTTCGGGGGGACGCACCTCGGTTCGC
TGTGGCTTGTACATGGCCACATTGGTAGCCATTCGTCATAACCCGGTGATTCGGAAGTTCTACGAACGGTTGTTGACCAATGGCAAGTTGAAAAAGGTGG
CCTTAGTTGCCTGTATGAGGAAATTGCTGGTTATCCTCAATGCCATGATTCGTGATAATAAATGCTGGCAAGCACCCGCTTAGTCCAGTTTTCCGAACAA
TTTCATCGCTGACAAAACGGATGACTGGTGCCGTTACTTTGTCTTGCCTATTTGGGGTACAAAAGATTTTCTTTATTCCCCTTGACTTTTAAGACAATCG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
936 bp | 311 aa | 248 | 1183 | + | No |
Chemistry : DEDD
ORF sequence :
MTEEKTWVGIDVSKEVLDIYVLPQGLTLQQPNSEVGVQSLIEQLHPLSPSLVVVESTGGLERALVSGLQAATIPVAIANPRKVKGFATALGKAKTDKLDA
QVIAQFARAVQPQPQPVVAPQAQQLSDLVRRRQQLVEMQVAEKNRLSRASETVQLDIKAHIEEIQQRIESLNEQIQSLAQQQADWQRKNEILQSVKGIGK
VSSALCLAELPEMGTLSEKQIARLVGVAPINHDSGQHKGKRMISGGRTSVRCGLYMATLVAIRHNPVIRKFYERLLTNGKLKKVALVACMRKLLVILNAM
IRDNKCWQAPA
QVIAQFARAVQPQPQPVVAPQAQQLSDLVRRRQQLVEMQVAEKNRLSRASETVQLDIKAHIEEIQQRIESLNEQIQSLAQQQADWQRKNEILQSVKGIGK
VSSALCLAELPEMGTLSEKQIARLVGVAPINHDSGQHKGKRMISGGRTSVRCGLYMATLVAIRHNPVIRKFYERLLTNGKLKKVALVACMRKLLVILNAM
IRDNKCWQAPA
Blast result :
Comments
ISMae40 is 70% aa similar to ISGme8.
References
1] Kaneko,T., Nakajima,N., Okamoto,S., Suzuki,I., Tanabe,Y., Tamaoki,M., Nakamura,Y., Kasai,F., Watanabe,A., Kawashima,K., Kishida,Y., Ono,A., Shimizu,Y., Takahashi,C., Minami,C., Fujishiro,T., Kohara,M., Katoh,M., Nakazaki,N., Nakayama,S., Yamada,M., Tabata,S. and Watanabe,M.M. (2007) DNA Res. 14 (6), 247-256