ISMdi15
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_012811 | ND | Methylobacterium extorquens | Methylobacterium extorquens AM1 Methylobacterium dichloromethanicum DM4 |
DNA section
IS Length : 1344 bp
Ends
Left end : TGCTCCCGCCAGACCGTGCAGTGGTGGGCGGGGGGTGAAGCCGCCAGCGCGAAGCGCTTGGCCGCTTTCGTACACGCTCGGCGTAAGGTATGTTCCCGTT II struct. : Yes
Right end : CGGCGTGGGTGCTCTGGAACATCGGTCAGGAACTGGCCGCGGGTGCGAGCCCGGAAACCGCGCTCGGAGCCGCGATAGCGGCTTGAGGGCGGTAGTTCAT II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
AAAACCGCAG | CTAG | TTCCGCCATA | tcat |
DNA sequence
TGCTCCCGCCAGACCGTGCAGTGGTGGGCGGGGGGTGAAGCCGCCAGCGCGAAGCGCTTGGCCGCTTTCGTACACGCTCGGCGTAAGGTATGTTCCCGTT
ATGTACCCCGTCCACCGCCGCGTGACGTACAAGCTGTACCCGTCGCCCGTTCAGGCGGCGGCGCTGGAGCGCGTCTGCGACCTGCACCGGGCGCTGTACA
ACGCGGCCCTGGAGGAGCGGATCGAGGCGTATCGCAAGGCGGGCAGGTCGATCGGCTTTGCCGACCAGTGCATATCGGTCACCGCGATCCGGCTGGACGA
CCCAGCCTATCGGGTGCTCAACGCGCAGTCTCTTCAGGTCACGCTCAAGCGGCTGGATCGGGCCTTCCAGAGCTTCTTCCGGCGCGTGAAGGCCGGGCAG
GCGCCTGGGTTCCCGCGCTTCAAGGGTCGCGACCGCTTCCCCGGCTTCGGCTTCAAGAGCCACGGCGACGGCTTCCGCTTCACGCCCGGCCAGGGCTGGC
GGAACGGGACGCTGCACCTCTCCGGCATCGGAGAGATGACGGCCCGCGGCGAAGCGCGCACGCCCGGCGAGCTCGTCTGCGCGGACGTGCAGCGCAGGGC
GGAGGGCTGGTTCCTGTCCCTGGTGGTCTCGTGCGAGCCGCATCGGGAACGCATGGGCGAAAGCATCGCCGGGCTGGATTGGGGCGTGGAGACCTATGCC
ACGCTCTGCACCGGGCCGATGCAGTTCGGTGAGATCGAGAACGAGCGCTTCCTCGCGGTCGAGCAGGAGGCGCTGAAGGAGGAGCAGCGCGCCCTCTCGC
GGGCGCTGCGCGGCAAGCGCTCGAAGCGCGCCGCCAAGGCGCGCAAGCTCATCGCCCGGCGCTCGCGCCACCTCGCGAACCGACGCAAGAACCGGACCCA
TCAGGTCACCGCCCGGCTCGTGCGCGGGCACGCGACGATCGTCACGGAGGACCTGTCCGTCCGCAACATGACCGCCTCGGCCAGGGGCAGCGTCGAAGAG
CCGGGTCGTCGCGTTAAGCAGAAGGCCGGGCTGAACCGGGCCATCCTCGACACCGCGCCTGGATCGTTTCTCTCCCACCTGCGCATCAAAGCGGAAGAAG
CTGGATGCGTGTTGGTTCTCGTCGATCCTCGCAGGCACAGGCCGTCGCAGACCTGTCCCGTCTCTGGCGAGGTTCGGAAGGAGGGCTTGGGCGAGCGCAC
CCACACCCTGCCGGACGGGCGAGTGATCTCGCGCGATCAGGCCTCGGCGTGGGTGCTCTGGAACATCGGTCAGGAACTGGCCGCGGGTGCGAGCCCGGAA
ACCGCGCTCGGAGCCGCGATAGCGGCTTGAGGGCGGTAGTTCAT
ATGTACCCCGTCCACCGCCGCGTGACGTACAAGCTGTACCCGTCGCCCGTTCAGGCGGCGGCGCTGGAGCGCGTCTGCGACCTGCACCGGGCGCTGTACA
ACGCGGCCCTGGAGGAGCGGATCGAGGCGTATCGCAAGGCGGGCAGGTCGATCGGCTTTGCCGACCAGTGCATATCGGTCACCGCGATCCGGCTGGACGA
CCCAGCCTATCGGGTGCTCAACGCGCAGTCTCTTCAGGTCACGCTCAAGCGGCTGGATCGGGCCTTCCAGAGCTTCTTCCGGCGCGTGAAGGCCGGGCAG
GCGCCTGGGTTCCCGCGCTTCAAGGGTCGCGACCGCTTCCCCGGCTTCGGCTTCAAGAGCCACGGCGACGGCTTCCGCTTCACGCCCGGCCAGGGCTGGC
GGAACGGGACGCTGCACCTCTCCGGCATCGGAGAGATGACGGCCCGCGGCGAAGCGCGCACGCCCGGCGAGCTCGTCTGCGCGGACGTGCAGCGCAGGGC
GGAGGGCTGGTTCCTGTCCCTGGTGGTCTCGTGCGAGCCGCATCGGGAACGCATGGGCGAAAGCATCGCCGGGCTGGATTGGGGCGTGGAGACCTATGCC
ACGCTCTGCACCGGGCCGATGCAGTTCGGTGAGATCGAGAACGAGCGCTTCCTCGCGGTCGAGCAGGAGGCGCTGAAGGAGGAGCAGCGCGCCCTCTCGC
GGGCGCTGCGCGGCAAGCGCTCGAAGCGCGCCGCCAAGGCGCGCAAGCTCATCGCCCGGCGCTCGCGCCACCTCGCGAACCGACGCAAGAACCGGACCCA
TCAGGTCACCGCCCGGCTCGTGCGCGGGCACGCGACGATCGTCACGGAGGACCTGTCCGTCCGCAACATGACCGCCTCGGCCAGGGGCAGCGTCGAAGAG
CCGGGTCGTCGCGTTAAGCAGAAGGCCGGGCTGAACCGGGCCATCCTCGACACCGCGCCTGGATCGTTTCTCTCCCACCTGCGCATCAAAGCGGAAGAAG
CTGGATGCGTGTTGGTTCTCGTCGATCCTCGCAGGCACAGGCCGTCGCAGACCTGTCCCGTCTCTGGCGAGGTTCGGAAGGAGGGCTTGGGCGAGCGCAC
CCACACCCTGCCGGACGGGCGAGTGATCTCGCGCGATCAGGCCTCGGCGTGGGTGCTCTGGAACATCGGTCAGGAACTGGCCGCGGGTGCGAGCCCGGAA
ACCGCGCTCGGAGCCGCGATAGCGGCTTGAGGGCGGTAGTTCAT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1231 bp | 409 aa | 101 | 1331 | + | No |
AG : TnpB
ORF sequence :
MYPVHRRVTYKLYPSPVQAAALERVCDLHRALYNAALEERIEAYRKAGRSIGFADQCISVTAIRLDDPAYRVLNAQSLQVTLKRLDRAFQSFFRRVKAGQ
APGFPRFKGRDRFPGFGFKSHGDGFRFTPGQGWRNGTLHLSGIGEMTARGEARTPGELVCADVQRRAEGWFLSLVVSCEPHRERMGESIAGLDWGVETYA
TLCTGPMQFGEIENERFLAVEQEALKEEQRALSRALRGKRSKRAAKARKLIARRSRHLANRRKNRTHQVTARLVRGHATIVTEDLSVRNMTASARGSVEE
PGRRVKQKAGLNRAILDTAPGSFLSHLRIKAEEAGCVLVLVDPRRHRPSQTCPVSGEVRKEGLGERTHTLPDGRVISRDQASAWVLWNIGQELAAGASPE
TALGAAIAA
APGFPRFKGRDRFPGFGFKSHGDGFRFTPGQGWRNGTLHLSGIGEMTARGEARTPGELVCADVQRRAEGWFLSLVVSCEPHRERMGESIAGLDWGVETYA
TLCTGPMQFGEIENERFLAVEQEALKEEQRALSRALRGKRSKRAAKARKLIARRSRHLANRRKNRTHQVTARLVRGHATIVTEDLSVRNMTASARGSVEE
PGRRVKQKAGLNRAILDTAPGSFLSHLRIKAEEAGCVLVLVDPRRHRPSQTCPVSGEVRKEGLGERTHTLPDGRVISRDQASAWVLWNIGQELAAGASPE
TALGAAIAA
Blast result :
Comments
ISMdi15 is 52% (TnpB) aa similar to ISCARN6.
The original copy in Methylobacterium dichloromethanicum DM4 is mutated (unexpected frameshifts in TnpB), it was replaced by a complete copy in Methylobacterium extorquens AM1.
The original copy in Methylobacterium dichloromethanicum DM4 is mutated (unexpected frameshifts in TnpB), it was replaced by a complete copy in Methylobacterium extorquens AM1.
References
1] Stephane Vuilleumier et.al. (2009) PLoS ONE 4 (5), E5584