ISMex45
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_012811 | ND | Methylobacterium extorquens | Methylobacterium extorquens AM1 |
DNA section
IS Length : 1270 bp
Ends
Left end : GTTGCTTCCGCAGAGGATCCCGTCCTTCAGGCCGGGGGTGAGTGCGTAGGAGCCGTGATGCGCGGTTGACCCGAGGAACGAACAGGGTACATCGGAGCCA II struct. : Yes
Right end : CGCGCATTCGGGCCGGGACACGGCCTTCGGTCGATAAGCGGGCGGGTTGCCGCGTAGCTCAGGCCGAGAAGCCCCGGCCTTCAGGCTGGGGAGTTGTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GACGAACTCC | GCAG | GCGTTCCGTC | tcac |
DNA sequence
GTTGCTTCCGCAGAGGATCCCGTCCTTCAGGCCGGGGGTGAGTGCGTAGGAGCCGTGATGCGCGGTTGACCCGAGGAACGAACAGGGTACATCGGAGCCA
TGTCCGATGCCACGCAGGTGCGCAGCTACAAGTATCGGCTTCGACCGAACGCGGCGCAGAGCGCCGCGCTCGATGCCATGCTGCGCGACTTCTGTGGCTT
GCACAATGCCTGCCTCCAACAACGCGACGAGGCATGGCGCAGGCGGCGCAAGCGACTGCGCTACGCCGATCAGGCCGCCGAACTGCGCGGCGCGCGGGCC
GAGGAGCCCACCCTGGCGCGCTGGTCGTTCACTGCCCTGCAGCAGGTCCTGCGTCGGGTCGAGCAGAGCTACGCTGCCTTCCTGTCGGGCAAGCGTGGAC
GACCGCGCTTCCGCGCGGCGGCCCGCTACCACGCCGCGACCTTCCGCGTCGGCGACGGCCTGCGGCTGCGCCCGAATGGGCGCATCACCGTCCTCGGCGT
GCCCGGTGAGATCAAGGCCGTGTGGCACCGGACACTGCCGGCCGATGCCCGGCTCGGCACCGCGATCCTGACCCGCCAGTCTGGCAAATGGCACGTCGTG
CTGTCGGTCGAGGCGACGTTCGCCGCGCCCGACGGCGCGGGCGACGTCGGCGTCGACCTCGGCCTGACCTGCCTGTTCGCGACCTCGGACGGGCACCGCG
AGCCGATCCCGCGCTTCGAACGGCGGGCGCACAAGGCGCAGAGGCGGCGCCAGCGGGCGCTGGCCCGCTGCAAGCGGGGCTCGCGCCGCCGGGCGAAGGC
CAAGCTGCGGCTCGCCGCCGCCTCGGCGCGGATCGCGCGCCAGCGGCGCGATCACGCCCACAAGCTCTCGCATGGACTGGTGGCGGCTTACCGCCGCCTC
GCCTTCGAGGACCTGAACACGGCCGGGCTCAAGCGTTCGCGCTTGGCCCGGTCGATCCACGACGCCGCATGGCGTCAACTCGTCGAGATGTGTCGCTACA
AGGCTTCGAGTGCCGGTGGCGAGGTGCATCTGGTCGATCCCAGGGGCACGTCACAGATGTGCCCCGTCTGCGGGGCGGTCGCGGCCAAGCCGCTCTCGCT
GCGCAGGCACGCCTGCGCCTGTGGGTGTGAGCTCGACCGCGACGTCGCCGCCGCGCAGGTGATCCGAGATCGCGCATTCGGGCCGGGACACGGCCTTCGG
TCGATAAGCGGGCGGGTTGCCGCGTAGCTCAGGCCGAGAAGCCCCGGCCTTCAGGCTGGGGAGTTGTCAC
TGTCCGATGCCACGCAGGTGCGCAGCTACAAGTATCGGCTTCGACCGAACGCGGCGCAGAGCGCCGCGCTCGATGCCATGCTGCGCGACTTCTGTGGCTT
GCACAATGCCTGCCTCCAACAACGCGACGAGGCATGGCGCAGGCGGCGCAAGCGACTGCGCTACGCCGATCAGGCCGCCGAACTGCGCGGCGCGCGGGCC
GAGGAGCCCACCCTGGCGCGCTGGTCGTTCACTGCCCTGCAGCAGGTCCTGCGTCGGGTCGAGCAGAGCTACGCTGCCTTCCTGTCGGGCAAGCGTGGAC
GACCGCGCTTCCGCGCGGCGGCCCGCTACCACGCCGCGACCTTCCGCGTCGGCGACGGCCTGCGGCTGCGCCCGAATGGGCGCATCACCGTCCTCGGCGT
GCCCGGTGAGATCAAGGCCGTGTGGCACCGGACACTGCCGGCCGATGCCCGGCTCGGCACCGCGATCCTGACCCGCCAGTCTGGCAAATGGCACGTCGTG
CTGTCGGTCGAGGCGACGTTCGCCGCGCCCGACGGCGCGGGCGACGTCGGCGTCGACCTCGGCCTGACCTGCCTGTTCGCGACCTCGGACGGGCACCGCG
AGCCGATCCCGCGCTTCGAACGGCGGGCGCACAAGGCGCAGAGGCGGCGCCAGCGGGCGCTGGCCCGCTGCAAGCGGGGCTCGCGCCGCCGGGCGAAGGC
CAAGCTGCGGCTCGCCGCCGCCTCGGCGCGGATCGCGCGCCAGCGGCGCGATCACGCCCACAAGCTCTCGCATGGACTGGTGGCGGCTTACCGCCGCCTC
GCCTTCGAGGACCTGAACACGGCCGGGCTCAAGCGTTCGCGCTTGGCCCGGTCGATCCACGACGCCGCATGGCGTCAACTCGTCGAGATGTGTCGCTACA
AGGCTTCGAGTGCCGGTGGCGAGGTGCATCTGGTCGATCCCAGGGGCACGTCACAGATGTGCCCCGTCTGCGGGGCGGTCGCGGCCAAGCCGCTCTCGCT
GCGCAGGCACGCCTGCGCCTGTGGGTGTGAGCTCGACCGCGACGTCGCCGCCGCGCAGGTGATCCGAGATCGCGCATTCGGGCCGGGACACGGCCTTCGG
TCGATAAGCGGGCGGGTTGCCGCGTAGCTCAGGCCGAGAAGCCCCGGCCTTCAGGCTGGGGAGTTGTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1128 bp | 375 aa | 100 | 1227 | + | No |
AG : TnpB
ORF sequence :
MSDATQVRSYKYRLRPNAAQSAALDAMLRDFCGLHNACLQQRDEAWRRRRKRLRYADQAAELRGARAEEPTLARWSFTALQQVLRRVEQSYAAFLSGKRG
RPRFRAAARYHAATFRVGDGLRLRPNGRITVLGVPGEIKAVWHRTLPADARLGTAILTRQSGKWHVVLSVEATFAAPDGAGDVGVDLGLTCLFATSDGHR
EPIPRFERRAHKAQRRRQRALARCKRGSRRRAKAKLRLAAASARIARQRRDHAHKLSHGLVAAYRRLAFEDLNTAGLKRSRLARSIHDAAWRQLVEMCRY
KASSAGGEVHLVDPRGTSQMCPVCGAVAAKPLSLRRHACACGCELDRDVAAAQVIRDRAFGPGHGLRSISGRVAA
RPRFRAAARYHAATFRVGDGLRLRPNGRITVLGVPGEIKAVWHRTLPADARLGTAILTRQSGKWHVVLSVEATFAAPDGAGDVGVDLGLTCLFATSDGHR
EPIPRFERRAHKAQRRRQRALARCKRGSRRRAKAKLRLAAASARIARQRRDHAHKLSHGLVAAYRRLAFEDLNTAGLKRSRLARSIHDAAWRQLVEMCRY
KASSAGGEVHLVDPRGTSQMCPVCGAVAAKPLSLRRHACACGCELDRDVAAAQVIRDRAFGPGHGLRSISGRVAA
Blast result :
Comments
ISMex45 is 95% (TnpB) aa similar to ISMex44.
References
1] Stéphane Vuilleumier et.al. (2009) PLoS ONE 4 (5), E5584