ISMex44
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_012811 | ND | Methylobacterium extorquens | Methylobacterium extorquens AM1 |
DNA section
IS Length : 1270 bp
Ends
Left end : GTTGCTTCCGCAGGGGATCCCGGCCTTCAGGCCGGGGGTGAATGCGGAGGAGCCGTGATGCGCGGTTGACCCTAGGAACGAACCGGGTACATCGGAGCCA II struct. : Yes
Right end : CGCGCATTCGGGCCGGGACACGGCCTTCGGTCGATAAGCGGGCGGGTTGCCGCGTAGCTCAGACCGAGAAGCCCTGGCCTTCAGGCCGGGGAGTTGTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GCAACTTCCA | TCAG | CATCTTGCCA | tcac |
DNA sequence
GTTGCTTCCGCAGGGGATCCCGGCCTTCAGGCCGGGGGTGAATGCGGAGGAGCCGTGATGCGCGGTTGACCCTAGGAACGAACCGGGTACATCGGAGCCA
TGTCCGACGCCACGCAGGTGCGCAGCTACAAGTATCGGCTTCGACCGAACGCGCCGCAAAGCGCTGCGCTCGCTGCGATGCTGCGCGACTTCTGCTCCCT
GCACAACGCCTGCCTCCAGCAACGCGACGAGGCATGGCGCAGGCGGCGCAAGCGACTGCGCTACGCCGATCAGGCCGCCGAACTGCGCGGTGTGCGGACC
GAAGAGCCCGCCCTGGCACGCTGGTCGTTCACCGCCCTGCAGCAGGTCCTGCGTAGGGTCGAGCAGAGCTACGCTGCCTTCCTGTCGGGCAAGCGCGGAC
GACCGCGCTTCCGGGCGGCGGCCCGCTACCACGCCGCAACCTTCCGCGTCGGCGACGGCCTGCGGCTGCGCCCGAATGGGCGCATCGCCGTCCTCGGCGT
GCCCGGCGAGATCAAGGCCGTGTGGCACCGGACGCTGCCGCCCGATGCCCGGCTCGGCACCGCGATCCTGACCCGCCAGTCCGGCAAATGGCACGTCGTG
CTGTCGGTCGAGGCGGCGTTCGCCGCGCCCGACAGCACGGGCGACGTCGGCATCGACCTCGGGCTGAGCTGTCTGTTCGCGACCTCGGACGGGCACCGCG
AGCCGATCCCGCGCTTCGAGCGGCGGGCGCACAGGGCACAGAGGCGGCGTCAGCGGGCGCTGGCCCGCTGCAAGCGGGGCTCGCGCCGCCGGGCGAAGGC
CAAGGCGCGGCTCGCCGCTGCCTCGGCGCGGATCGCACGCCAGCGGCGCGATCACGTCCACAAGCTCTCGCATGGACTGGTGGCGGCTCACCGCCGCCTC
GCCTTCGAGGACCTGAACATGGCCGGGCTCAAGCGTTCGCGCTTGGCCCGGTCGATCCACGACGCCGCATGGCGTCAACTCGTCGAGATGTGCCGCTACA
AGGCTTCGAGTGCCGGTGGCGCGGTGCATCTGGTCGATCCCCGAGGGACGTCACAGACGTGCCCCGCCTGTGGGGCTGTCGCGGCCAAGCCGCTCTCGCT
GCGCAGACACATCTGCGCCTGTGGGTGTGACCTCGACCGCGACGTCGCCGCGGCGCAGGTGATCCGAGATCGCGCATTCGGGCCGGGACACGGCCTTCGG
TCGATAAGCGGGCGGGTTGCCGCGTAGCTCAGACCGAGAAGCCCTGGCCTTCAGGCCGGGGAGTTGTCAC
TGTCCGACGCCACGCAGGTGCGCAGCTACAAGTATCGGCTTCGACCGAACGCGCCGCAAAGCGCTGCGCTCGCTGCGATGCTGCGCGACTTCTGCTCCCT
GCACAACGCCTGCCTCCAGCAACGCGACGAGGCATGGCGCAGGCGGCGCAAGCGACTGCGCTACGCCGATCAGGCCGCCGAACTGCGCGGTGTGCGGACC
GAAGAGCCCGCCCTGGCACGCTGGTCGTTCACCGCCCTGCAGCAGGTCCTGCGTAGGGTCGAGCAGAGCTACGCTGCCTTCCTGTCGGGCAAGCGCGGAC
GACCGCGCTTCCGGGCGGCGGCCCGCTACCACGCCGCAACCTTCCGCGTCGGCGACGGCCTGCGGCTGCGCCCGAATGGGCGCATCGCCGTCCTCGGCGT
GCCCGGCGAGATCAAGGCCGTGTGGCACCGGACGCTGCCGCCCGATGCCCGGCTCGGCACCGCGATCCTGACCCGCCAGTCCGGCAAATGGCACGTCGTG
CTGTCGGTCGAGGCGGCGTTCGCCGCGCCCGACAGCACGGGCGACGTCGGCATCGACCTCGGGCTGAGCTGTCTGTTCGCGACCTCGGACGGGCACCGCG
AGCCGATCCCGCGCTTCGAGCGGCGGGCGCACAGGGCACAGAGGCGGCGTCAGCGGGCGCTGGCCCGCTGCAAGCGGGGCTCGCGCCGCCGGGCGAAGGC
CAAGGCGCGGCTCGCCGCTGCCTCGGCGCGGATCGCACGCCAGCGGCGCGATCACGTCCACAAGCTCTCGCATGGACTGGTGGCGGCTCACCGCCGCCTC
GCCTTCGAGGACCTGAACATGGCCGGGCTCAAGCGTTCGCGCTTGGCCCGGTCGATCCACGACGCCGCATGGCGTCAACTCGTCGAGATGTGCCGCTACA
AGGCTTCGAGTGCCGGTGGCGCGGTGCATCTGGTCGATCCCCGAGGGACGTCACAGACGTGCCCCGCCTGTGGGGCTGTCGCGGCCAAGCCGCTCTCGCT
GCGCAGACACATCTGCGCCTGTGGGTGTGACCTCGACCGCGACGTCGCCGCGGCGCAGGTGATCCGAGATCGCGCATTCGGGCCGGGACACGGCCTTCGG
TCGATAAGCGGGCGGGTTGCCGCGTAGCTCAGACCGAGAAGCCCTGGCCTTCAGGCCGGGGAGTTGTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1128 bp | 375 aa | 100 | 1227 | + | No |
AG : TnpB
ORF sequence :
MSDATQVRSYKYRLRPNAPQSAALAAMLRDFCSLHNACLQQRDEAWRRRRKRLRYADQAAELRGVRTEEPALARWSFTALQQVLRRVEQSYAAFLSGKRG
RPRFRAAARYHAATFRVGDGLRLRPNGRIAVLGVPGEIKAVWHRTLPPDARLGTAILTRQSGKWHVVLSVEAAFAAPDSTGDVGIDLGLSCLFATSDGHR
EPIPRFERRAHRAQRRRQRALARCKRGSRRRAKAKARLAAASARIARQRRDHVHKLSHGLVAAHRRLAFEDLNMAGLKRSRLARSIHDAAWRQLVEMCRY
KASSAGGAVHLVDPRGTSQTCPACGAVAAKPLSLRRHICACGCDLDRDVAAAQVIRDRAFGPGHGLRSISGRVAA
RPRFRAAARYHAATFRVGDGLRLRPNGRIAVLGVPGEIKAVWHRTLPPDARLGTAILTRQSGKWHVVLSVEAAFAAPDSTGDVGIDLGLSCLFATSDGHR
EPIPRFERRAHRAQRRRQRALARCKRGSRRRAKAKARLAAASARIARQRRDHVHKLSHGLVAAHRRLAFEDLNMAGLKRSRLARSIHDAAWRQLVEMCRY
KASSAGGAVHLVDPRGTSQTCPACGAVAAKPLSLRRHICACGCDLDRDVAAAQVIRDRAFGPGHGLRSISGRVAA
Blast result :
Comments
ISMex44 is 51% (TnpB) aa similar to ISSoc5.
References
1] Stéphane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. (2009) PLoS ONE 4:5.