ISMae41
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AP009552 | ND | Microcystis aeruginosa | Microcystis aeruginosa NIES-843 |
DNA section
IS Length : 1321 bp
Ends
Left end : CGAAAATTTGGGTCTGAAACCCCGTCGTTCTACGACGGCTTTACTGTTAAATATGAGCATCGTTTACGAAATATATGCTAAAATGTGAGGTATGGAAAAA II struct. : Yes
Right end : ATCTGTTAAGGCAGGTGCGGAACCCCGCAAGGGAAAGAAGCAGAAACCTAAATCGTGAGGTTTGGGAATCACCGTCCGTTTACGGCGGTGAGGATGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CGCCCCTCCT | TCAT | AAAAATCGTC | tcaa |
TTCAGTACAT | TCAT | ATTAGGAGAA | TCAA |
TTTTCTTGGC | TCAT | GCTTGTTCCT | TCAA |
GAAGATGTTG | TCAT | GTCAGCTAAA | tcaa |
DNA sequence
CGAAAATTTGGGTCTGAAACCCCGTCGTTCTACGACGGCTTTACTGTTAAATATGAGCATCGTTTACGAAATATATGCTAAAATGTGAGGTATGGAAAAA
GCCTATTCGTTTCGATTTTACCCCACACCCGAACAAGAGTCGCTATTGCGGCGCACTTTGGGCTGTGTAAGATTAGTTTACAATAAAGCTCTCCATGTCA
GAACACAAGCATGGTACGAAAGACAAGAAAGAGTAGGCTACGCTCAAACTTCTTCAATGCTAACCGATTGGAAAAAGCAAGAAGAATTAAACTTTCTCAA
TGAAGTAAGCTGTGTACCCTTACAACAAGGGTTAAGACATTTACAAACAGCTTTCACTAATTTCTTTGCTGGTCGTACTAAGTATCCTAACTTTAAGAAA
AAACATCAGGGAGGAAGTGCCGAATTTACCAAATCTGCTTTTACAATTAAAGACAGACAAATCTATTTAGCTAAATGCACAGAACCTTTACCTATTCGAT
GGTCAAGACACATCCCAGAAAGCTGTGAACCAAGCACAGTAACAGTCAGATTACATCCTTCAGGACGTTGGCATATCTCAATAAGATTTGATGACCCAAC
GATTAAGCCATTACCAGTAACAGATAAAGCCATTGGAATTGACTTAGGAATTAGTAGCCTTGTCATTACCAGCGATGGTGACAAAGTATCTAATCCTGAG
CATTTTAAAAAGCATTATCGGAGACTGCGAAGAGCATCTAAAAGTCTTTCTCGAAAACAGAAAGGGTCAAAAAATCGGGAAAAAGCGAGAATCAAAGTAG
CCAAGATTCACGCTCGAATCACCGATAACAGAAAAGACCATTTACACAAGCTAACCACTCAATTAGTTCGTGAAAACCAAACGATTGTGGTTGAGAATTT
AGCCGTCAAGAATATGGTCAAAAACCCGAAATTATCTCAGGCAATATCTGACGTTAGCTGGGGAGAAATCACCCGACAATTAGCCTATAAATGCCGTTGG
TACGGCAGAAATTACATCGAAATAGATAGATGGTTTCCTAGCTCTAAAAGGTGTAGTAATTGCGGGTATATTGCTGAGAAAATGCCGTTAAATATTCGAG
AATGGGACTGTCCAGACTGTGGGACACACCATGACCGAGATATTAACGCCAGTAAAAATATTTTGGCCGCAGGGCTTGCGGTGTCAGTCTGTAGAGCGAC
CATAAGACCAGAACAGAGTAAATCTGTTAAGGCAGGTGCGGAACCCCGCAAGGGAAAGAAGCAGAAACCTAAATCGTGAGGTTTGGGAATCACCGTCCGT
TTACGGCGGTGAGGATGTCAA
GCCTATTCGTTTCGATTTTACCCCACACCCGAACAAGAGTCGCTATTGCGGCGCACTTTGGGCTGTGTAAGATTAGTTTACAATAAAGCTCTCCATGTCA
GAACACAAGCATGGTACGAAAGACAAGAAAGAGTAGGCTACGCTCAAACTTCTTCAATGCTAACCGATTGGAAAAAGCAAGAAGAATTAAACTTTCTCAA
TGAAGTAAGCTGTGTACCCTTACAACAAGGGTTAAGACATTTACAAACAGCTTTCACTAATTTCTTTGCTGGTCGTACTAAGTATCCTAACTTTAAGAAA
AAACATCAGGGAGGAAGTGCCGAATTTACCAAATCTGCTTTTACAATTAAAGACAGACAAATCTATTTAGCTAAATGCACAGAACCTTTACCTATTCGAT
GGTCAAGACACATCCCAGAAAGCTGTGAACCAAGCACAGTAACAGTCAGATTACATCCTTCAGGACGTTGGCATATCTCAATAAGATTTGATGACCCAAC
GATTAAGCCATTACCAGTAACAGATAAAGCCATTGGAATTGACTTAGGAATTAGTAGCCTTGTCATTACCAGCGATGGTGACAAAGTATCTAATCCTGAG
CATTTTAAAAAGCATTATCGGAGACTGCGAAGAGCATCTAAAAGTCTTTCTCGAAAACAGAAAGGGTCAAAAAATCGGGAAAAAGCGAGAATCAAAGTAG
CCAAGATTCACGCTCGAATCACCGATAACAGAAAAGACCATTTACACAAGCTAACCACTCAATTAGTTCGTGAAAACCAAACGATTGTGGTTGAGAATTT
AGCCGTCAAGAATATGGTCAAAAACCCGAAATTATCTCAGGCAATATCTGACGTTAGCTGGGGAGAAATCACCCGACAATTAGCCTATAAATGCCGTTGG
TACGGCAGAAATTACATCGAAATAGATAGATGGTTTCCTAGCTCTAAAAGGTGTAGTAATTGCGGGTATATTGCTGAGAAAATGCCGTTAAATATTCGAG
AATGGGACTGTCCAGACTGTGGGACACACCATGACCGAGATATTAACGCCAGTAAAAATATTTTGGCCGCAGGGCTTGCGGTGTCAGTCTGTAGAGCGAC
CATAAGACCAGAACAGAGTAAATCTGTTAAGGCAGGTGCGGAACCCCGCAAGGGAAAGAAGCAGAAACCTAAATCGTGAGGTTTGGGAATCACCGTCCGT
TTACGGCGGTGAGGATGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1188 bp | 395 aa | 92 | 1279 | + | No |
AG : TnpB
ORF sequence :
MEKAYSFRFYPTPEQESLLRRTLGCVRLVYNKALHVRTQAWYERQERVGYAQTSSMLTDWKKQEELNFLNEVSCVPLQQGLRHLQTAFTNFFAGRTKYPN
FKKKHQGGSAEFTKSAFTIKDRQIYLAKCTEPLPIRWSRHIPESCEPSTVTVRLHPSGRWHISIRFDDPTIKPLPVTDKAIGIDLGISSLVITSDGDKVS
NPEHFKKHYRRLRRASKSLSRKQKGSKNREKARIKVAKIHARITDNRKDHLHKLTTQLVRENQTIVVENLAVKNMVKNPKLSQAISDVSWGEITRQLAYK
CRWYGRNYIEIDRWFPSSKRCSNCGYIAEKMPLNIREWDCPDCGTHHDRDINASKNILAAGLAVSVCRATIRPEQSKSVKAGAEPRKGKKQKPKS
FKKKHQGGSAEFTKSAFTIKDRQIYLAKCTEPLPIRWSRHIPESCEPSTVTVRLHPSGRWHISIRFDDPTIKPLPVTDKAIGIDLGISSLVITSDGDKVS
NPEHFKKHYRRLRRASKSLSRKQKGSKNREKARIKVAKIHARITDNRKDHLHKLTTQLVRENQTIVVENLAVKNMVKNPKLSQAISDVSWGEITRQLAYK
CRWYGRNYIEIDRWFPSSKRCSNCGYIAEKMPLNIREWDCPDCGTHHDRDINASKNILAAGLAVSVCRATIRPEQSKSVKAGAEPRKGKKQKPKS
Blast result :
Comments
ISMae41 is 83% (TnpB) aa similar to ISTel3.
References
1] Kaneko,T., Nakajima,N., Okamoto,S., Suzuki,I., Tanabe,Y., Tamaoki,M., Nakamura,Y., Kasai,F., Watanabe,A., Kawashima,K., Kishida,Y., Ono,A., Shimizu,Y., Takahashi,C., Minami,C., Fujishiro,T., Kohara,M., Katoh,M., Nakazaki,N., Nakayama,S., Yamada,M., Tabata,S. and Watanabe,M.M. (2007) DNA Res. 14 (6), 247-256