ISMco3
- Family IS701
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_015416 | ND | Methanosaeta concilii | Methanosaeta concilii GP6 |
DNA section
IS Length : 1406 bp
Ends
IR Length : 16/17
IRL : CTGTACTTTCCAACTTTTTAATAGATTTATAATATTCTCCTGTTAACTCA
IRR : CTGTACTTTCCAAGTTTCTCCCTTGTTTATAATTTTTAATTTATCATATT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCAGTCTCTA | TTTCTTTT | ATAATTCCCA | 8 |
DNA sequence
CTGTACTTTCCAACTTTTTAATAGATTTATAATATTCTCCTGTTAACTCAAACCATAAATTTCCTATAGAAAATTAAAGCTTTTATACTTGGATCCGAAT
CCCTTCTTCGGGAGTAGAATGATCAAAATAGTAAAGGTACCGTTGCAATTGGAGCCGTTTTTAGATAAGTTTAGGGATCTCTTCACAAAACCGAGTTACA
GATCATTTCGAGATCTGTGTGGCGCGTTGAGCGTATGTGATAAATCCAAGACCGTTTCTAACCTTTGTGATACTATGGCAGATTGTAGCAAAGGGAAAAA
ATCACGTTCTTCATACAATTGGTTCTTTAGCGATGCGAATTGGGATGAAAATGAAGTTGCACAACGCAAGGTGGATCTTTTCATCGATAGTTTATGTTTG
AAAGAGAACGATAAACTATTATTAATAATTGATGATACATACAATGAGAAAGAAGGAAATCAAACAGATGGTGTGGGCAAATTTTACGATCATAGTAAAG
AAGCCTATATTTGGGGTAACAATTTCGTTACCTCTGTTGTCCAATCAAAAGGACTATTTATTCCACATAAAGCTAAGATGTATATTAAGAATGATGACGA
AAATGAGAATTTTAAAACAAAAATGGAGATTGCCTTTGAAGAGATCATCAAACCATTAGTTGTACCAAAAAGCATCGATCTTTATATCGTTTTCGATAGC
TGGTGGTTTTCTTCTGATCTATTTAGCAAGTGCCTTAAGCTAGGGCATAATATCGTATGCCAAATCAAGTCTGATAAGAAAGTCGGAATAAATAAGGATA
TGTATTTCCAAGTCAGAGATCTAGCGAATCAAATTGAAGATAAATTTTTTATTAAGACAACAGTTAGCGTTCGTGGAAAAAAGAAGACCTATTATGCATT
TGAAAAGAAGGTAATCATAGACAAGGTAGGCGAAGTTAAGCTTGTTATCTCCAAGAGAAAAAAAGATAGCACGACAAAATATATAATCAGCACTAATGGA
TCGCTTTCATTGAAAGAAATACTCTCAATTTACGAGGACAGATGGGATATAGAAACAGCTCATAGAGAGGCAAATCAAAAATTAGGATTTAAAGATTACC
AATTAAGAGATAAACACTCAATTGAAAGATTTATTCAAATGGTTTTTTCAGTATGGACTGCAATTCTCTTATGGGAAATAGATAATCCGCCACCTAAAGA
TGGCTCAAAATCAAGAACGATGGGCGACATGGTCGATAGAGTAAAAATGCAAGCTGTTGGAGAAACATTTGAATTTGTCATGACATATTTTAATTTGCCT
GTACCTGATGGAGGATTGCTTTATATACTCAAGAGCCTTGGAATGAAGATATGAATAATATGATAAATTAAAAATTATAAACAAGGGAGAAACTTGGAAA
GTACAG
CCCTTCTTCGGGAGTAGAATGATCAAAATAGTAAAGGTACCGTTGCAATTGGAGCCGTTTTTAGATAAGTTTAGGGATCTCTTCACAAAACCGAGTTACA
GATCATTTCGAGATCTGTGTGGCGCGTTGAGCGTATGTGATAAATCCAAGACCGTTTCTAACCTTTGTGATACTATGGCAGATTGTAGCAAAGGGAAAAA
ATCACGTTCTTCATACAATTGGTTCTTTAGCGATGCGAATTGGGATGAAAATGAAGTTGCACAACGCAAGGTGGATCTTTTCATCGATAGTTTATGTTTG
AAAGAGAACGATAAACTATTATTAATAATTGATGATACATACAATGAGAAAGAAGGAAATCAAACAGATGGTGTGGGCAAATTTTACGATCATAGTAAAG
AAGCCTATATTTGGGGTAACAATTTCGTTACCTCTGTTGTCCAATCAAAAGGACTATTTATTCCACATAAAGCTAAGATGTATATTAAGAATGATGACGA
AAATGAGAATTTTAAAACAAAAATGGAGATTGCCTTTGAAGAGATCATCAAACCATTAGTTGTACCAAAAAGCATCGATCTTTATATCGTTTTCGATAGC
TGGTGGTTTTCTTCTGATCTATTTAGCAAGTGCCTTAAGCTAGGGCATAATATCGTATGCCAAATCAAGTCTGATAAGAAAGTCGGAATAAATAAGGATA
TGTATTTCCAAGTCAGAGATCTAGCGAATCAAATTGAAGATAAATTTTTTATTAAGACAACAGTTAGCGTTCGTGGAAAAAAGAAGACCTATTATGCATT
TGAAAAGAAGGTAATCATAGACAAGGTAGGCGAAGTTAAGCTTGTTATCTCCAAGAGAAAAAAAGATAGCACGACAAAATATATAATCAGCACTAATGGA
TCGCTTTCATTGAAAGAAATACTCTCAATTTACGAGGACAGATGGGATATAGAAACAGCTCATAGAGAGGCAAATCAAAAATTAGGATTTAAAGATTACC
AATTAAGAGATAAACACTCAATTGAAAGATTTATTCAAATGGTTTTTTCAGTATGGACTGCAATTCTCTTATGGGAAATAGATAATCCGCCACCTAAAGA
TGGCTCAAAATCAAGAACGATGGGCGACATGGTCGATAGAGTAAAAATGCAAGCTGTTGGAGAAACATTTGAATTTGTCATGACATATTTTAATTTGCCT
GTACCTGATGGAGGATTGCTTTATATACTCAAGAGCCTTGGAATGAAGATATGAATAATATGATAAATTAAAAATTATAAACAAGGGAGAAACTTGGAAA
GTACAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1236 bp | 411 aa | 119 | 1354 | + | No |
Chemistry : DDE
ORF sequence :
MIKIVKVPLQLEPFLDKFRDLFTKPSYRSFRDLCGALSVCDKSKTVSNLCDTMADCSKGKKSRSSYNWFFSDANWDENEVAQRKVDLFIDSLCLKENDKL
LLIIDDTYNEKEGNQTDGVGKFYDHSKEAYIWGNNFVTSVVQSKGLFIPHKAKMYIKNDDENENFKTKMEIAFEEIIKPLVVPKSIDLYIVFDSWWFSSD
LFSKCLKLGHNIVCQIKSDKKVGINKDMYFQVRDLANQIEDKFFIKTTVSVRGKKKTYYAFEKKVIIDKVGEVKLVISKRKKDSTTKYIISTNGSLSLKE
ILSIYEDRWDIETAHREANQKLGFKDYQLRDKHSIERFIQMVFSVWTAILLWEIDNPPPKDGSKSRTMGDMVDRVKMQAVGETFEFVMTYFNLPVPDGGL
LYILKSLGMKI
LLIIDDTYNEKEGNQTDGVGKFYDHSKEAYIWGNNFVTSVVQSKGLFIPHKAKMYIKNDDENENFKTKMEIAFEEIIKPLVVPKSIDLYIVFDSWWFSSD
LFSKCLKLGHNIVCQIKSDKKVGINKDMYFQVRDLANQIEDKFFIKTTVSVRGKKKTYYAFEKKVIIDKVGEVKLVISKRKKDSTTKYIISTNGSLSLKE
ILSIYEDRWDIETAHREANQKLGFKDYQLRDKHSIERFIQMVFSVWTAILLWEIDNPPPKDGSKSRTMGDMVDRVKMQAVGETFEFVMTYFNLPVPDGGL
LYILKSLGMKI
Blast result :
Comments
ISMco3 is 48% aa similar to ISCth16.
References
1] ISfinder submission (2012)
2] Barber,R.D., Zhang,L., Harnack,M., Olson,M.V., Kaul,R., Ingram-Smith,C. and Smith,K.S. (2011) J. Bacteriol. 193 (14), 3668-3669.
2] Barber,R.D., Zhang,L., Harnack,M., Olson,M.V., Kaul,R., Ingram-Smith,C. and Smith,K.S. (2011) J. Bacteriol. 193 (14), 3668-3669.