ISMesi2
- Family IS701
- Group ISAba11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_014212 | ND | Meiothermus silvanus | Meiothermus silvanus DSM 9946
Meiothermus silvanus DSM 9946 plasmid pMESIL01 |
DNA section
IS Length : 1092 bp
Ends
IR Length : 16/17
IRL : TAGGAGTTACGCAGTTGCAGTTGACTGGACATTCTTCTGTGTGCTAGGAG
IRR : TAGGACTTACGCAGTTGGCTGAAGGATGTGGAGGGGATGGGCGAGATAAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGAGTCTCAC | ATGTG | TTTGTCCGGG | 5 |
ACGTTTTAAA | AACTG | TAAAAGTGTT | 5 |
CTACGTAGAA | AACTC | CTTGAAGTCA | 5 |
AGTTTCCTTA | ACAGA | GTTAACAAAA | 5 |
CCCACCTTAT | AGGTC | TTTTTGCCAA | 5 |
TAGGGTCAAT | TATAT | GTCGTACGTC | 5 |
GTAACGTTAT | TTGGG | TTGAACGCGG | 5 |
GATGTCCAAC | AGCAG | ATAACCGCTC | 5 |
GATTTTCGAC | ACCTT | ATTGACTCGC | 5 |
ACGAAATAAA | TCGAG | GTGGAAAGCG | 5 |
TTGACCGATT | ACAAT | ATTTGACAGA | 5 |
CTGACTTAAT | ATATT | TCGATTCGCG | 5 |
ACGTTTTAAT | ATTAT | GTGAAAACCT | 5 |
CCATCGAGAA | ACTAA | TACCGGGCGG | 5 |
GGGATTTTGC | AACAT | AAAAACCTGC | 5 |
TTACCTCCTA | AATGT | ATATACGAAG | 5 |
GAGACTCTAA | GCTGG | GATAAAAAGA | 5 |
TCAACCGAAT | CTGGT | ATCAATCCTT | 5 |
CTGGCTTAAT | CAAAC | ATTTAATAAA | 5 |
AAAAGCAGAT | ACGAG | AAAATCAAGC | 5 |
GACTTTTGAC | AGATGT | ATTGGACACT | 6 |
TTAGAGTCTC | ACATGT | GTTTGTCCGG | 6 |
GAAACGACAT | AAATGT | GAAATTTTGA | 6 |
CAAATCTTAC | ACCCGT | ATCTGGGCTT | 6 |
GGTAGACGCT | AGGGGGATAA | 0 | |
GACTGGTTGC | TGGAGGA | GAGCGATGAA | 7 |
TTCGGCCAAC | CTGCT | ATCACGTATT | 5 |
TATCGGTATA | TTAAT | TTTACCAAAC | 5 |
GCTGGAAAAA | AGGCT | GTTGCAGGAA | 5 |
GGAATTCTTC | ATCTG | CTTTCCCCAG | 5 |
TATGGAAAAT | ACTCA | GTATGATCGA | 5 |
GACTGGTTGC | TGGAGGA | GAGCGATGAA | 7 |
TCTTTTTGAA | TCCGGT | ATCAAAGCAA | 6 |
DNA sequence
TAGGAGTTACGCAGTTGCAGTTGACTGGACATTCTTCTGTGTGCTAGGAGGAGAGTGCTTAGCCAAGCTTCTCCAAAGGGGGTGATGCCCATGAACCCAC
CGAAGTGCGATGACCTGGACTACATCCACTTTCTCATCGCCGCTCAGCGGGTCTTCACCTGTACCGAGGCCGCTCGCTGTAGTCCAAAGGAGAAGAGCCC
TCCCGCCCATGATGCCTTTACCCGCCTGCTGCAAAGACAGCCGCCCGACACGGCGGCGCTGTGGCAGGAGGCCAAGGCCTTCGTGAAGCTCAGGGAGGGG
CTGCTGATCCTGGACGACACCACCCTGGATAAGCCCTACGCTCGGGACATGGATCTGGTGAGTTACCACTGGAGCGGCAAACACCAAAGGGTGGTTAGGG
GCATCGCCCTCATGACCCTGCTGTGGACGGAGGGGCAGGCCCTGATCCCCTGCGACTTTCGGGTCTACGACAAGCCCCAGGATGGGAAGAGCAAAAACGA
CCACTTTCAGACCATGCTCCAGAAAGCGAAGGAGCGGGGGTTTCAGCCGGAATATGTCCTGATGGACAGCTGGTATGCCAGCTTGGAGAACCTCAAGGCC
ATAGTCAGCTTTGGCTGGCGGTTTCTGACGCGGCTGAAGGGCAACCGCCTGGTCAACCCGGAGGGGAAGGGAAATGTACCCATCCGTGAGGTGGAAATCC
CTGGGGAGGGGAGGGTGGTTCATCTTCGGGGTTTTGGGTTCGTGAGGGTGTTCCGAACGCTCTCCAAGGACGGGGAGGCGGAGTACTGGGCCACGAACCA
TCTGGGGATGAGCGAAGAGAAGCGGGCGGAGTTAGAGCGGCAAGGATGGGGGATCGAAGTGTACCATCGGGGGCTCAAGCAGTGCTGTGGGGTGGAGCGG
GCCCAGGTGAGGAAGGCGGTCTCCATCCTGCGGCACCTCCTCCTGGCTTTGCGGGCCTTCCTCCGGCTGGAGGTCTACCGGCTGCGCAGGGGGGTGAGCT
GGTACGAGGCCAAGGCGTCCATTGTTCGCGAGGCAATACGAAGTTATCTCGCCCATCCCCTCCACATCCTTCAGCCAACTGCGTAAGTCCTA
CGAAGTGCGATGACCTGGACTACATCCACTTTCTCATCGCCGCTCAGCGGGTCTTCACCTGTACCGAGGCCGCTCGCTGTAGTCCAAAGGAGAAGAGCCC
TCCCGCCCATGATGCCTTTACCCGCCTGCTGCAAAGACAGCCGCCCGACACGGCGGCGCTGTGGCAGGAGGCCAAGGCCTTCGTGAAGCTCAGGGAGGGG
CTGCTGATCCTGGACGACACCACCCTGGATAAGCCCTACGCTCGGGACATGGATCTGGTGAGTTACCACTGGAGCGGCAAACACCAAAGGGTGGTTAGGG
GCATCGCCCTCATGACCCTGCTGTGGACGGAGGGGCAGGCCCTGATCCCCTGCGACTTTCGGGTCTACGACAAGCCCCAGGATGGGAAGAGCAAAAACGA
CCACTTTCAGACCATGCTCCAGAAAGCGAAGGAGCGGGGGTTTCAGCCGGAATATGTCCTGATGGACAGCTGGTATGCCAGCTTGGAGAACCTCAAGGCC
ATAGTCAGCTTTGGCTGGCGGTTTCTGACGCGGCTGAAGGGCAACCGCCTGGTCAACCCGGAGGGGAAGGGAAATGTACCCATCCGTGAGGTGGAAATCC
CTGGGGAGGGGAGGGTGGTTCATCTTCGGGGTTTTGGGTTCGTGAGGGTGTTCCGAACGCTCTCCAAGGACGGGGAGGCGGAGTACTGGGCCACGAACCA
TCTGGGGATGAGCGAAGAGAAGCGGGCGGAGTTAGAGCGGCAAGGATGGGGGATCGAAGTGTACCATCGGGGGCTCAAGCAGTGCTGTGGGGTGGAGCGG
GCCCAGGTGAGGAAGGCGGTCTCCATCCTGCGGCACCTCCTCCTGGCTTTGCGGGCCTTCCTCCGGCTGGAGGTCTACCGGCTGCGCAGGGGGGTGAGCT
GGTACGAGGCCAAGGCGTCCATTGTTCGCGAGGCAATACGAAGTTATCTCGCCCATCCCCTCCACATCCTTCAGCCAACTGCGTAAGTCCTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1032 bp | 343 aa | 55 | 1086 | + | No |
Description :
ORF sequence :
MLSQASPKGVMPMNPPKCDDLDYIHFLIAAQRVFTCTEAARCSPKEKSPPAHDAFTRLLQRQPPDTAALWQEAKAFVKLREGLLILDDTTLDKPYARDMD
LVSYHWSGKHQRVVRGIALMTLLWTEGQALIPCDFRVYDKPQDGKSKNDHFQTMLQKAKERGFQPEYVLMDSWYASLENLKAIVSFGWRFLTRLKGNRLV
NPEGKGNVPIREVEIPGEGRVVHLRGFGFVRVFRTLSKDGEAEYWATNHLGMSEEKRAELERQGWGIEVYHRGLKQCCGVERAQVRKAVSILRHLLLALR
AFLRLEVYRLRRGVSWYEAKASIVREAIRSYLAHPLHILQPTA
LVSYHWSGKHQRVVRGIALMTLLWTEGQALIPCDFRVYDKPQDGKSKNDHFQTMLQKAKERGFQPEYVLMDSWYASLENLKAIVSFGWRFLTRLKGNRLV
NPEGKGNVPIREVEIPGEGRVVHLRGFGFVRVFRTLSKDGEAEYWATNHLGMSEEKRAELERQGWGIEVYHRGLKQCCGVERAQVRKAVSILRHLLLALR
AFLRLEVYRLRRGVSWYEAKASIVREAIRSYLAHPLHILQPTA
Blast result :
Comments
ISMesi2 is 63% aa similar to ISMhu9.
There is 25 copies of ISMesi2 on Meiothermus silvanus DSM 9946 chromosome, and 8 copies on the plasmid.
There is 25 copies of ISMesi2 on Meiothermus silvanus DSM 9946 chromosome, and 8 copies on the plasmid.
References
1] ISfinder annotation (2011).