ISMco6
- Family ISAzo13
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_015416 | ND | Methanosaeta concilii | Methanosaeta concilii GP6 |
DNA section
IS Length : 1306 bp
Ends
IR Length : 20/27
IRL : GTTGTTGACGCAAAATAAAATAGACAACTTTATATTGTAGAACATCGTTT
IRR : GGGCTTGACGCTAAATAATATATTCAATTTCTCGCTATTTTGATGTAGTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTGTTTTAAC | TAA | GAAGCTAATC | 3 |
CAAAAGTAGC | TAA | GATCAGTAAG | 3 |
TACTCGCAAC | CAA | GCTGCCGCTT | 3 |
TGTGTTTTAC | TAA | GATCTTGTTA | 3 |
DNA sequence
GTTGTTGACGCAAAATAAAATAGACAACTTTATATTGTAGAACATCGTTTATATATTATGGAAAGCGAAGTAGACTATGAACCATTCCTAAAAGCCTTGT
CAGGTGCAGATCCGATCCAGGCAAGGCGTTTTGCGGCTGCGAAGGCTCTTGAACTTGGATGGGGCGGTGTCTCAAAAGTCTCTGCCATAACTGGATTTTC
GCGTACTACTATCAATAAGGGCATTCAAGAGCTTGAGAGCAACGAAGATCTGAAGCCACCCGAAAGGCTTCGCAAGCCGGGTGGTGGTCGAAAACGAGTT
GCAGATAGAGAGCCAAACCTATTGAACGACCTAGAAAAAATAATGGAAGAGAGTACAGCAGGCGACCCAATGAGTCTTCTCAAATGGACATATAAATCAA
CCTATGCCATCGCCGAAGAACTGCAATCGAGAGGTCATAAAGTAAGTCATGATACAGTGAGACGGCTATTGAAGGAAAGCGGCTACTCGCTTCAAGCCAA
TCGAAAAAACCTAGAAGGTAAGTCAGGTCCAGAGAGAGATACTCAATTCCGCTATGTCAGTAGTCAAGCCGCCAAATTCATTGATGCAGGTGATCCTGTA
ATTTCTGTAGATGCAAAGAAAAAGGAACTCGTCGGCAACTACAAGAATTCAGGCAGGACTTGGAGGCAAAAAGGACAACCAGAACTGGTTAATGTGTATG
ATTTCCCATCCAAAGCGATTGGAGCCGCTATCCCTTATGGGGTTTATGATCCTAAAAGAAACGAAGGGGTCGTTAATATCGGAAAGAGCCACAATACCGC
AGAATTTGCCGTTGAGAGCATCAGACAATGGTGGAATTTAGTTGGAAAATATCGCTATGCAGGATGCAAAAATTTGCTCATTTGCGCGGATGGTGGTGGG
AGCAACGGAAGCCGAAACAGGGGATGGAAGTTCTTTTTGCAGCAATTGGCTGATGAAATTGGAATAACCATTACGGTTAGTCATTTTCCACCTGGGACGA
GCAAGTGGAATAAGATCGAGCATTGCATGTTCTCATTTATAAGCATGAATTGGCGAGGAAAGCCTTTATCCAGCTATGAAACCATTATCAAGCTAATCGG
ATCAACTAAGACAAAGAAGGGGCTAAGGATAGAGGCTCGATTAGATGACCGAGATTATGAAACGGGAATAAAGATATTGGACGAGGATATGGCGCGATTG
AAAATTAGTGTACATGAATTATATCCCATGTGGAACTATTCAATAGAACCACGTCTAACTACATCAAAATAGCGAGAAATTGAATATATTATTTAGCGTC
AAGCCC
CAGGTGCAGATCCGATCCAGGCAAGGCGTTTTGCGGCTGCGAAGGCTCTTGAACTTGGATGGGGCGGTGTCTCAAAAGTCTCTGCCATAACTGGATTTTC
GCGTACTACTATCAATAAGGGCATTCAAGAGCTTGAGAGCAACGAAGATCTGAAGCCACCCGAAAGGCTTCGCAAGCCGGGTGGTGGTCGAAAACGAGTT
GCAGATAGAGAGCCAAACCTATTGAACGACCTAGAAAAAATAATGGAAGAGAGTACAGCAGGCGACCCAATGAGTCTTCTCAAATGGACATATAAATCAA
CCTATGCCATCGCCGAAGAACTGCAATCGAGAGGTCATAAAGTAAGTCATGATACAGTGAGACGGCTATTGAAGGAAAGCGGCTACTCGCTTCAAGCCAA
TCGAAAAAACCTAGAAGGTAAGTCAGGTCCAGAGAGAGATACTCAATTCCGCTATGTCAGTAGTCAAGCCGCCAAATTCATTGATGCAGGTGATCCTGTA
ATTTCTGTAGATGCAAAGAAAAAGGAACTCGTCGGCAACTACAAGAATTCAGGCAGGACTTGGAGGCAAAAAGGACAACCAGAACTGGTTAATGTGTATG
ATTTCCCATCCAAAGCGATTGGAGCCGCTATCCCTTATGGGGTTTATGATCCTAAAAGAAACGAAGGGGTCGTTAATATCGGAAAGAGCCACAATACCGC
AGAATTTGCCGTTGAGAGCATCAGACAATGGTGGAATTTAGTTGGAAAATATCGCTATGCAGGATGCAAAAATTTGCTCATTTGCGCGGATGGTGGTGGG
AGCAACGGAAGCCGAAACAGGGGATGGAAGTTCTTTTTGCAGCAATTGGCTGATGAAATTGGAATAACCATTACGGTTAGTCATTTTCCACCTGGGACGA
GCAAGTGGAATAAGATCGAGCATTGCATGTTCTCATTTATAAGCATGAATTGGCGAGGAAAGCCTTTATCCAGCTATGAAACCATTATCAAGCTAATCGG
ATCAACTAAGACAAAGAAGGGGCTAAGGATAGAGGCTCGATTAGATGACCGAGATTATGAAACGGGAATAAAGATATTGGACGAGGATATGGCGCGATTG
AAAATTAGTGTACATGAATTATATCCCATGTGGAACTATTCAATAGAACCACGTCTAACTACATCAAAATAGCGAGAAATTGAATATATTATTTAGCGTC
AAGCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1215 bp | 404 aa | 58 | 1272 | + | No |
Chemistry : Unknow
ORF sequence :
MESEVDYEPFLKALSGADPIQARRFAAAKALELGWGGVSKVSAITGFSRTTINKGIQELESNEDLKPPERLRKPGGGRKRVADREPNLLNDLEKIMEEST
AGDPMSLLKWTYKSTYAIAEELQSRGHKVSHDTVRRLLKESGYSLQANRKNLEGKSGPERDTQFRYVSSQAAKFIDAGDPVISVDAKKKELVGNYKNSGR
TWRQKGQPELVNVYDFPSKAIGAAIPYGVYDPKRNEGVVNIGKSHNTAEFAVESIRQWWNLVGKYRYAGCKNLLICADGGGSNGSRNRGWKFFLQQLADE
IGITITVSHFPPGTSKWNKIEHCMFSFISMNWRGKPLSSYETIIKLIGSTKTKKGLRIEARLDDRDYETGIKILDEDMARLKISVHELYPMWNYSIEPRL
TTSK
AGDPMSLLKWTYKSTYAIAEELQSRGHKVSHDTVRRLLKESGYSLQANRKNLEGKSGPERDTQFRYVSSQAAKFIDAGDPVISVDAKKKELVGNYKNSGR
TWRQKGQPELVNVYDFPSKAIGAAIPYGVYDPKRNEGVVNIGKSHNTAEFAVESIRQWWNLVGKYRYAGCKNLLICADGGGSNGSRNRGWKFFLQQLADE
IGITITVSHFPPGTSKWNKIEHCMFSFISMNWRGKPLSSYETIIKLIGSTKTKKGLRIEARLDDRDYETGIKILDEDMARLKISVHELYPMWNYSIEPRL
TTSK
Blast result :
Comments
ISMco6 is 76% aa similar to ISArch16.
References
1] ISfinder annotation (2013)
2] Barber,R.D., Zhang,L., Harnack,M., Olson,M.V., Kaul,R., Ingram-Smith,C. and Smith,K.S. (2011) J. Bacteriol. 193 (14), 3668-3669.
2] Barber,R.D., Zhang,L., Harnack,M., Olson,M.V., Kaul,R., Ingram-Smith,C. and Smith,K.S. (2011) J. Bacteriol. 193 (14), 3668-3669.