ISOni2
- Family ISKra4
- Group ISMich2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_019730 | ND | Oscillatoria nigro-viridis | Oscillatoria nigro-viridis PCC 7112 Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.02 |
DNA section
IS Length : 1179 bp
Ends
IR Length : 23/24
IRL : GGGTGCATCTCACTTTGGCGAATATGTCACCAAAGGGTTAAAATGGAAAA
IRR : GGGTGCATCTCACTTTGGCAAATACATCAAATTGAAAGTTGACCGTTGAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGGGAAGAGA | ATTGACAG | GACTTACGAT | 8 |
CTCGTCAGCC | CGATCTAA | ACTATCATCA | 8 |
GGATGAGGAT | GATGACGA | TGAGGAGGAT | 8 |
GTTCTCGAAA | AACGTGCA | GTTGTCGATC | 8 |
CCGAATGTGC | GATCGACT | TTTGGGAAAA | 8 |
DNA sequence
GGGTGCATCTCACTTTGGCGAATATGTCACCAAAGGGTTAAAATGGAAAAGCTAGTAAAATTGCCCAAAAATATGAGGTAAAGAAAATGACACCCTCAGA
CCAAGAACAGCTAAAAGTCTACTTAAAAGCGGCAGCAGAAATTCTTTACAGAAATACAGCTCCAAGCGAGTTAGAAAGCTTTGATAGCATAGAAAAGTCT
CTCCGTCAGAAAATGCTAGAAGAAGTGGGACCAGAACTAGGTAACTTTTTTTTTCAGCAGTATCAGGAATTCAAACAGGAAAACCCAGAAAAATAAAATC
AATAGTCGGTTCGCTCGAAATTACCGACAATCAAGCGAAATATTTTGGATTGAAAGCGTATAGTCAATTCAGTCCAATGATGGAAAAATGCTGTCTTTTA
ATTAGTGCCAACGAATCTTATCAAATGGCAGAAAAAGATTTAGAGATTTTCACCGGAATCAAAGTCTCTCATAGTACATTACAAAGATTAGTCAAACGAC
AAGAATTTGAATTACCTACATCTAAACAAGGAGTTCAAGAAATTACATTAGATGGCGGGAAAGTCAGGCTACGCAACGACACCAAAGGCGAGGGTTGTTA
CTGGAAAGACTATAAAGCCATTTGTTTAGATAATGTTTATTCGGGAGCATCTTTTCAAAATAATCAAAATTTAATTGATTGGACTAATAGCCAAAAATTG
CGACATCCTATGTATTGCCTAGGAGACGGTCATGCGGGAATTTGGAAAATATTTCAAGAAATAGGAGATACTGAACAAAGACAAGAAATCTTAGATTGGT
ATCATCTGAAAGAAAATCTTTACAAGGTAGGAGGTTCGCTAAAACGTTTGAAATTAGCAGAAAATATGTTGTGGCAAGGTAAAATAGATGAAGTTATCAA
TCTATTTAAAGAGATGAAAAAACAAGCATTTAAAACATTTTGTAATTATTTAGAGACTCATCGCTGCCGAATAGTCAACTACCAATACTATAAAGAAGAA
TCCATAAGTTCGATAGGTTCTGGAACAGTTGAATCAATCATTAAACGAATTGGGTTTAGGGTAAAAATATCAGGAGCGCAATGGAAGATTGAGAGCGTTC
CCTCTATCCTTTCTCTTCGCTGTGCTTATCTCAACGGTCAACTTTCAATTTGATGTATTTGCCAAAGTGAGATGCACCC
CCAAGAACAGCTAAAAGTCTACTTAAAAGCGGCAGCAGAAATTCTTTACAGAAATACAGCTCCAAGCGAGTTAGAAAGCTTTGATAGCATAGAAAAGTCT
CTCCGTCAGAAAATGCTAGAAGAAGTGGGACCAGAACTAGGTAACTTTTTTTTTCAGCAGTATCAGGAATTCAAACAGGAAAACCCAGAAAAATAAAATC
AATAGTCGGTTCGCTCGAAATTACCGACAATCAAGCGAAATATTTTGGATTGAAAGCGTATAGTCAATTCAGTCCAATGATGGAAAAATGCTGTCTTTTA
ATTAGTGCCAACGAATCTTATCAAATGGCAGAAAAAGATTTAGAGATTTTCACCGGAATCAAAGTCTCTCATAGTACATTACAAAGATTAGTCAAACGAC
AAGAATTTGAATTACCTACATCTAAACAAGGAGTTCAAGAAATTACATTAGATGGCGGGAAAGTCAGGCTACGCAACGACACCAAAGGCGAGGGTTGTTA
CTGGAAAGACTATAAAGCCATTTGTTTAGATAATGTTTATTCGGGAGCATCTTTTCAAAATAATCAAAATTTAATTGATTGGACTAATAGCCAAAAATTG
CGACATCCTATGTATTGCCTAGGAGACGGTCATGCGGGAATTTGGAAAATATTTCAAGAAATAGGAGATACTGAACAAAGACAAGAAATCTTAGATTGGT
ATCATCTGAAAGAAAATCTTTACAAGGTAGGAGGTTCGCTAAAACGTTTGAAATTAGCAGAAAATATGTTGTGGCAAGGTAAAATAGATGAAGTTATCAA
TCTATTTAAAGAGATGAAAAAACAAGCATTTAAAACATTTTGTAATTATTTAGAGACTCATCGCTGCCGAATAGTCAACTACCAATACTATAAAGAAGAA
TCCATAAGTTCGATAGGTTCTGGAACAGTTGAATCAATCATTAAACGAATTGGGTTTAGGGTAAAAATATCAGGAGCGCAATGGAAGATTGAGAGCGTTC
CCTCTATCCTTTCTCTTCGCTGTGCTTATCTCAACGGTCAACTTTCAATTTGATGTATTTGCCAAAGTGAGATGCACCC
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
210 bp | 69 aa | 87 | 296 | + | No |
Description : First part of the transposase
ORF sequence :
MTPSDQEQLKVYLKAAAEILYRNTAPSELESFDSIEKSLRQKMLEEVGPELGNFFFQQYQEFKQENPEK
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
909 bp | 302 aa | 245 | 1153 | + | No |
Description : Second part of the transposase
ORF sequence :
LFFSAVSGIQTGKPRKIKSIVGSLEITDNQAKYFGLKAYSQFSPMMEKCCLLISANESYQMAEKDLEIFTGIKVSHSTLQRLVKRQEFELPTSKQGVQEI
TLDGGKVRLRNDTKGEGCYWKDYKAICLDNVYSGASFQNNQNLIDWTNSQKLRHPMYCLGDGHAGIWKIFQEIGDTEQRQEILDWYHLKENLYKVGGSLK
RLKLAENMLWQGKIDEVINLFKEMKKQAFKTFCNYLETHRCRIVNYQYYKEESISSIGSGTVESIIKRIGFRVKISGAQWKIESVPSILSLRCAYLNGQL
SI
TLDGGKVRLRNDTKGEGCYWKDYKAICLDNVYSGASFQNNQNLIDWTNSQKLRHPMYCLGDGHAGIWKIFQEIGDTEQRQEILDWYHLKENLYKVGGSLK
RLKLAENMLWQGKIDEVINLFKEMKKQAFKTFCNYLETHRCRIVNYQYYKEESISSIGSGTVESIIKRIGFRVKISGAQWKIESVPSILSLRCAYLNGQL
SI
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1067 bp | 355 aa | 87 | 1153 | + | Yes |
Chemistry : DDE
ORF sequence :
MTPSDQEQLKVYLKAAAEILYRNTAPSELESFDSIEKSLRQKMLEEVGPELGNFFFSAVSGIQTGKPRKIKSIVGSLEITDNQAKYFGLKAYSQFSPMME
KCCLLISANESYQMAEKDLEIFTGIKVSHSTLQRLVKRQEFELPTSKQGVQEITLDGGKVRLRNDTKGEGCYWKDYKAICLDNVYSGASFQNNQNLIDWT
NSQKLRHPMYCLGDGHAGIWKIFQEIGDTEQRQEILDWYHLKENLYKVGGSLKRLKLAENMLWQGKIDEVINLFKEMKKQAFKTFCNYLETHRCRIVNYQ
YYKEESISSIGSGTVESIIKRIGFRVKISGAQWKIESVPSILSLRCAYLNGQLSI
KCCLLISANESYQMAEKDLEIFTGIKVSHSTLQRLVKRQEFELPTSKQGVQEITLDGGKVRLRNDTKGEGCYWKDYKAICLDNVYSGASFQNNQNLIDWT
NSQKLRHPMYCLGDGHAGIWKIFQEIGDTEQRQEILDWYHLKENLYKVGGSLKRLKLAENMLWQGKIDEVINLFKEMKKQAFKTFCNYLETHRCRIVNYQ
YYKEESISSIGSGTVESIIKRIGFRVKISGAQWKIESVPSILSLRCAYLNGQLSI
Blast result :
Comments
ISOni2 is 94% aa similar to ISOni1.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] ISfinder annotation (2013)
2] Gugger,M., Coursin,T., Rippka,R., Tandeau De Marsac,N., Huntemann,M., Wei,C.-L., Han,J., Detter,J.C., Han,C., Tapia,R., Davenport,K., Daligault,H., Erkkila,T., Gu,W., Munk,A.C.C., Teshima,H., Xu,Y., Chain,P., Chen,A., Krypides,N., Mavromatis,K., Markowitz,V., Szeto,E., Ivanova,N., Mikhailova,N., Ovchinnikova,G., Pagani,I., Pati,A., Goodwin,L., Peters,L., Pitluck,S., Woyke,T. and Kerfeld,C. (2012) Direct submission GenBank.
2] Gugger,M., Coursin,T., Rippka,R., Tandeau De Marsac,N., Huntemann,M., Wei,C.-L., Han,J., Detter,J.C., Han,C., Tapia,R., Davenport,K., Daligault,H., Erkkila,T., Gu,W., Munk,A.C.C., Teshima,H., Xu,Y., Chain,P., Chen,A., Krypides,N., Mavromatis,K., Markowitz,V., Szeto,E., Ivanova,N., Mikhailova,N., Ovchinnikova,G., Pagani,I., Pati,A., Goodwin,L., Peters,L., Pitluck,S., Woyke,T. and Kerfeld,C. (2012) Direct submission GenBank.