ISMet1
- Family ISKra4
- Group ISAzba1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FO000002 | ND | Methylocystis sp. | Methylocystis sp. SC2 plasmid 2 |
DNA section
IS Length : 1557 bp
Ends
IR Length : 26/28
IRL : GGGACCGTTAAATTAACTGGGGCGCCACGGAGCTTTAACTTCTGTTAATG
IRR : GGGACCGTTAAATTAACTGGGGTGCTACTCTGCTCTGAGGAGTGGCGGCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AACGGCCAGA | CCCGTCCGCG | 0 |
DNA sequence
GGGACCGTTAAATTAACTGGGGCGCCACGGAGCTTTAACTTCTGTTAATGAAAAGAGTTGCCGGCTTCGTAGGAGACGGCAATGCGGTGGATGATTACAA
TTGAAGGCACGGATGAATTTGGCGCGGCGCATCGGTCCGAGATAGCTCTGGAAAAAGATTTGAACAGTTTGACGGCGGGAGCTGTGGGCTTTTCTATCGA
GGACGGCAAGACGATCATGGCCCACCTGCAGCAGGTCATCGTGAAGCAGCAATGCGAGACCTACGTCTTGGTTCGCCGATTTTGCATGGATTGCGAGCGC
TTTCGACGCATCAAGGACTACAGCAAGCGAAAGATCAGAACGGTGTTTGGCTGCGTCGAGGTTCGTAATCCACGCATCCTGAATTGCCAACGCTGCGTGC
CGTATTTCCGCGACGCTTCAGCAGTCCTGCGGGATTTTTTCCCCGACCAGGCGACGCCGGAATTGATGGAGCTATCGGCTCGCCTCGGCAGTTTGATGCC
CTACCGCAAAGCGGCAGATGTCATCGCGGAGTTTTTGCCCGTCAAATCGTCTGAGTCCTTCGTCACGGTTCGCCATCGCACGCTCGCTCTCGGCAAGCGG
CTCGATGAAAAGGCGCGAGATCGCGCCTGGTTCGATCCGCCACACGCTGACGAGCGCGAGCAGATCGAGCTTGATCTGCCAAATGATCCCGAGCGAGAGT
TCGTTGTCAGCATTGACACAGCCCATATCAAAGGTGCCTCCGAGGCGGACGGGCGAACCTTTGAGATCGCAGTTGCGCGATGCGGCCGCGGACGACGCGG
CTCCCGTCCCGGTCACTATTTCGTGACGGCAGACACTTCGAAACAAGAACTACGGCTGCGCACGCTTCAAGCGCTTCAGAGCGAGGGCTACGTGGGTCGC
GGCGAAATTACCGTGTTGTCTGATGGCGCGGAGATTATGAAGCGGCTACCTCGCAATTTGCCGCGTCCGACCAGGCATATCGTTGATTGGTTCCACATCG
CTATGAAAATCCAGCCCCTACAGCAAGTCGCCGATCATATCGTTCGCTGGCGCGACGAATGGACAAATGAAACCGTCGTTTTCGATGAGGAGATCCGCGC
CTTGAAGTGGAAGCTGTGGCATGGACAGGTCGATCGAGCGATAGAACACCTCGGGGAAATCATCGCAGACATGTCGATGTTACGCGAGCAAGGCGACCTG
GGCGCCGGCCGCATATGGCAATTGGCGCAACCGCTTCTGACTTACATCCGTCAAAACAAGTCTGCGATCGTCGATTACGGAGCTCGATATCGGTCGGGAC
GACGGATCGCCACTGCGCTGGCCGAATCCGCAGTGAATTCGCTGACCGCACGCCGCATGGTCAAAAAACAACAGATGCGATGGTCAAAGCGCGGCGCTCA
TCTGATGCTGCAGGTGCGCGCCGCGGTCATGAACGGAAACTTGCGTGAGCAGTTGTCCTACGAACCGCCAGTCTTCAAATCGCGTTTGAACTGACTGTTT
CAGCCGACGCCGCCACTCCTCAGAGCAGAGTAGCACCCCAGTTAATTTAACGGTCCC
TTGAAGGCACGGATGAATTTGGCGCGGCGCATCGGTCCGAGATAGCTCTGGAAAAAGATTTGAACAGTTTGACGGCGGGAGCTGTGGGCTTTTCTATCGA
GGACGGCAAGACGATCATGGCCCACCTGCAGCAGGTCATCGTGAAGCAGCAATGCGAGACCTACGTCTTGGTTCGCCGATTTTGCATGGATTGCGAGCGC
TTTCGACGCATCAAGGACTACAGCAAGCGAAAGATCAGAACGGTGTTTGGCTGCGTCGAGGTTCGTAATCCACGCATCCTGAATTGCCAACGCTGCGTGC
CGTATTTCCGCGACGCTTCAGCAGTCCTGCGGGATTTTTTCCCCGACCAGGCGACGCCGGAATTGATGGAGCTATCGGCTCGCCTCGGCAGTTTGATGCC
CTACCGCAAAGCGGCAGATGTCATCGCGGAGTTTTTGCCCGTCAAATCGTCTGAGTCCTTCGTCACGGTTCGCCATCGCACGCTCGCTCTCGGCAAGCGG
CTCGATGAAAAGGCGCGAGATCGCGCCTGGTTCGATCCGCCACACGCTGACGAGCGCGAGCAGATCGAGCTTGATCTGCCAAATGATCCCGAGCGAGAGT
TCGTTGTCAGCATTGACACAGCCCATATCAAAGGTGCCTCCGAGGCGGACGGGCGAACCTTTGAGATCGCAGTTGCGCGATGCGGCCGCGGACGACGCGG
CTCCCGTCCCGGTCACTATTTCGTGACGGCAGACACTTCGAAACAAGAACTACGGCTGCGCACGCTTCAAGCGCTTCAGAGCGAGGGCTACGTGGGTCGC
GGCGAAATTACCGTGTTGTCTGATGGCGCGGAGATTATGAAGCGGCTACCTCGCAATTTGCCGCGTCCGACCAGGCATATCGTTGATTGGTTCCACATCG
CTATGAAAATCCAGCCCCTACAGCAAGTCGCCGATCATATCGTTCGCTGGCGCGACGAATGGACAAATGAAACCGTCGTTTTCGATGAGGAGATCCGCGC
CTTGAAGTGGAAGCTGTGGCATGGACAGGTCGATCGAGCGATAGAACACCTCGGGGAAATCATCGCAGACATGTCGATGTTACGCGAGCAAGGCGACCTG
GGCGCCGGCCGCATATGGCAATTGGCGCAACCGCTTCTGACTTACATCCGTCAAAACAAGTCTGCGATCGTCGATTACGGAGCTCGATATCGGTCGGGAC
GACGGATCGCCACTGCGCTGGCCGAATCCGCAGTGAATTCGCTGACCGCACGCCGCATGGTCAAAAAACAACAGATGCGATGGTCAAAGCGCGGCGCTCA
TCTGATGCTGCAGGTGCGCGCCGCGGTCATGAACGGAAACTTGCGTGAGCAGTTGTCCTACGAACCGCCAGTCTTCAAATCGCGTTTGAACTGACTGTTT
CAGCCGACGCCGCCACTCCTCAGAGCAGAGTAGCACCCCAGTTAATTTAACGGTCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1413 bp | 467 aa | 82 | 1494 | + | No |
Chemistry : DDE
ORF sequence :
MITIEGTDEFGAAHRSEIALEKDLNSLTAGAVGFSIEDGKTIMAHLQQVIVKQQCETYVLVRRFCMDCERFRRIKDYSKRKIRTVFGCVEVRNPRILNCQ
RCVPYFRDASAVLRDFFPDQATPELMELSARLGSLMPYRKAADVIAEFLPVKSSESFVTVRHRTLALGKRLDEKARDRAWFDPPHADEREQIELDLPNDP
EREFVVSIDTAHIKGASEADGRTFEIAVARCGRGRRGSRPGHYFVTADTSKQELRLRTLQALQSEGYVGRGEITVLSDGAEIMKRLPRNLPRPTRHIVDW
FHIAMKIQPLQQVADHIVRWRDEWTNETVVFDEEIRALKWKLWHGQVDRAIEHLGEIIADMSMLREQGDLGAGRIWQLAQPLLTYIRQNKSAIVDYGARY
RSGRRIATALAESAVNSLTARRMVKKQQMRWSKRGAHLMLQVRAAVMNGNLREQLSYEPPVFKSRLN
RCVPYFRDASAVLRDFFPDQATPELMELSARLGSLMPYRKAADVIAEFLPVKSSESFVTVRHRTLALGKRLDEKARDRAWFDPPHADEREQIELDLPNDP
EREFVVSIDTAHIKGASEADGRTFEIAVARCGRGRRGSRPGHYFVTADTSKQELRLRTLQALQSEGYVGRGEITVLSDGAEIMKRLPRNLPRPTRHIVDW
FHIAMKIQPLQQVADHIVRWRDEWTNETVVFDEEIRALKWKLWHGQVDRAIEHLGEIIADMSMLREQGDLGAGRIWQLAQPLLTYIRQNKSAIVDYGARY
RSGRRIATALAESAVNSLTARRMVKKQQMRWSKRGAHLMLQVRAAVMNGNLREQLSYEPPVFKSRLN
Blast result :
Comments
ISMet1 is 52% aa similar to ISAzba1.
References
1] ISfinder annotation (2013)
2] Dam,B., Kube,M., Dam,S., Reinhardt,R. and Liesack,W. (2012) Appl. Environ. Microbiol. 78 (12), 4373-4379.
2] Dam,B., Kube,M., Dam,S., Reinhardt,R. and Liesack,W. (2012) Appl. Environ. Microbiol. 78 (12), 4373-4379.