ISMal1
- Family ISKra4
- Group ISAzba1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AHAM01000308 | ND | Mesorhizobium alhagi | Mesorhizobium alhagi CCNWXJ12-2 |
DNA section
IS Length : 2308 bp
Ends
IR Length : 19/21
IRL : GAGAGCAGGAAAAAGTGTGGGATGTTTCCGGTAGTCCGAGCGAGAGAGCG
IRR : GAGAGCAGGAAAATCTGTGGGGGCATTCAGGCGGCCGCAGCTTGAGTTGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTCGATGAAG | GATCTATTCA | 0 |
DNA sequence
GAGAGCAGGAAAAAGTGTGGGATGTTTCCGGTAGTCCGAGCGAGAGAGCGGCGATAGACTTGTCGCGATAGCACTTTTCCGCCGGACTGAATTAGAACAT
GCTTGACGACGAGATCGACTCATCGGGTGGAGCCAACGGTTCGATCCTGCAACTGAAGGTTCGCCTGCTCGATGTGAGCCCGATGGTCTGGAGGCGCGTC
GTGGTGCCGGCAGCCATGACGTTGAAGGACCTGCATGGCGTCTTTCAGGTGGTGCTGGGGTGGCACAGCCTTCACCTTTATCGGTTTCGCATCCATGCTG
TGCACTATGGTTCCTGGGGGCTGGGAGCGGAAAATCCGGACCGAACGCTTTGCAGCTTCAATTTCCGCCGCAGTGACAAGTTCGTCTATGAATACGACAT
GACGGACTACTGGAAGCACGAGGTCCGGATCGATGCCTGGCTTGAGCCGCAGCCCCGCAATGGCTACCCGGCCTGCATCGGCGGCAAGGGTGGTTGCCCG
CCCGAGGAATGCGGCGGTCCGGCCGGCTACGACGAATTCCGCATCGAAGCACTCGGCCTCGATGCCCACGAAGATCTCGACACCATGGTCGAGATTCTGG
ATCGAATCGTGCTGCAGAACCAGCCACATCTGCTGGATGACGACGAAATCCGCGGTCGGCTCGAGCGCGCTGTGGAGCGAAACCGAGCTCGGTTTGACCG
GCGCGCAGTGAACACCCGGTTGCGCGCCGGCGAGCACCATGTTCTCAAGCATCAGCAGCTTTGCTGAGCCGGCGGGTTCGCCAGACCAAAACCGGGAGAG
CGCGGCCACGGGTTTTCCTCTCCCTGTCTTGTGACAAACTCATGCAGGAGGAGGGAAGCCATGCGTGTCGAGGTGCGATTGCGGGTTGTTGGCGACGCCG
GCGAAATCATCTGCGATGACGCCAATGTGCTGGTGATCGATAAGCGCCACGATCGGCTGGAGGCAATCGGCCTTTCGCTCGATGAAGCCAAGGAGTTTCT
GGCCGGCGTTCAGCAGCACCTCGTCGCGGCCCAGGCTGCCGCCTTCGCCGCCGGTCGTCGATGCTGCACACATTGTGGTCGCTCCCTTCGGCGCAAGGGC
CGCGCCACGCTGACGTTTCGCACCCCGTTCGGCAATGTGCCAATCGACAGTCCGCGCCTTCATCGGTGTCGCTGCGCGGCTTCGGCAGCCGAAGAAGGAC
CGCAGACCTTCAGCCCATTGACCTCGCTGTTGACCAGCCACATCGCGCCCGAGCTGCTCTATCTTGAAAGCAAATGGGCCTCGCTCGTCTCCTATGGCAT
GACCGTCGACCTGCTCAGGGACGTGCTGCCGATCGACGCCAGGCTCAACCCGAAAACCGTGCGCAATCATCTGCACCGTATGGCGGAGCGCCTCGAATCC
GTACTTGGCGATGAGCGGCCGAACTTCATCGACAGCTGTCCACGCGACTGGAAGGCGCTGCCGCAGCCGGAAGGCGAGATCGTCGTCGGCATCGATGGCG
GCTATGTGCGCGACTGGACCGACAGGAAAAGTCATTTCGGGATTCTGGTCGGCAAGTCATTGCCGCGGGATCGCAACGATCGCTATCTCGGCCTGGTCCA
GAGTTTTGATACCAAGCCGAAACGCCGACTGTGGGAACTCCTGTGTTCGCAAGGCCTGCAGCTGAACCAAGCCGTCACCTTCCTGACCGACGGCGGCGAT
GACGTTCGCAACCTGGCGGCCGAGATGGCGCCCTACGCGGAGCATCATCTGGATTGGTTCCATATCACCATGCGCCTGACGGTGCTTGGCCAGTATGCCA
AAGGTCTCATCCATCACGACCAGGAAGCCGGCGAGCGGATTGCCCGCAATCTGCTGCGGATCAAGCGGTACCTCTGGCATGGCAATTCCCGCGCCGCCCT
GTTCTGGAGCCAGGACCTAGCGGATGACCTCTATGGGCTCGAAGAAGACTGCACCTATCCCAAGCTGAAGGCGTTCTCCCAGGCGCTCGCGGAATTCGTC
ACCTATATCGAGCGCAACGCCCACGCGATCCCGAATTACGGAGAACGCTATCGCAACGACGAGCGCATCGCTACGTCGTTCGTGGAGTCCGCCGTCAATG
TCGTCATCGCCAAGCGCTTTACCAAGAAACAACAGATGCAGTGGTCGCGATGCGGCGCCCATATGCTCCTGCAGATCCGCACGCGAACCCTGGATGGCAC
GCTCCGCGGCCAATTCGAAACGTGGTATCCCGGGCTCGCGGCAAATGAGAACCAGACATCAACTCAAGCTGCGGCCGCCTGAATGCCCCCACAGATTTTC
CTGCTCTC
GCTTGACGACGAGATCGACTCATCGGGTGGAGCCAACGGTTCGATCCTGCAACTGAAGGTTCGCCTGCTCGATGTGAGCCCGATGGTCTGGAGGCGCGTC
GTGGTGCCGGCAGCCATGACGTTGAAGGACCTGCATGGCGTCTTTCAGGTGGTGCTGGGGTGGCACAGCCTTCACCTTTATCGGTTTCGCATCCATGCTG
TGCACTATGGTTCCTGGGGGCTGGGAGCGGAAAATCCGGACCGAACGCTTTGCAGCTTCAATTTCCGCCGCAGTGACAAGTTCGTCTATGAATACGACAT
GACGGACTACTGGAAGCACGAGGTCCGGATCGATGCCTGGCTTGAGCCGCAGCCCCGCAATGGCTACCCGGCCTGCATCGGCGGCAAGGGTGGTTGCCCG
CCCGAGGAATGCGGCGGTCCGGCCGGCTACGACGAATTCCGCATCGAAGCACTCGGCCTCGATGCCCACGAAGATCTCGACACCATGGTCGAGATTCTGG
ATCGAATCGTGCTGCAGAACCAGCCACATCTGCTGGATGACGACGAAATCCGCGGTCGGCTCGAGCGCGCTGTGGAGCGAAACCGAGCTCGGTTTGACCG
GCGCGCAGTGAACACCCGGTTGCGCGCCGGCGAGCACCATGTTCTCAAGCATCAGCAGCTTTGCTGAGCCGGCGGGTTCGCCAGACCAAAACCGGGAGAG
CGCGGCCACGGGTTTTCCTCTCCCTGTCTTGTGACAAACTCATGCAGGAGGAGGGAAGCCATGCGTGTCGAGGTGCGATTGCGGGTTGTTGGCGACGCCG
GCGAAATCATCTGCGATGACGCCAATGTGCTGGTGATCGATAAGCGCCACGATCGGCTGGAGGCAATCGGCCTTTCGCTCGATGAAGCCAAGGAGTTTCT
GGCCGGCGTTCAGCAGCACCTCGTCGCGGCCCAGGCTGCCGCCTTCGCCGCCGGTCGTCGATGCTGCACACATTGTGGTCGCTCCCTTCGGCGCAAGGGC
CGCGCCACGCTGACGTTTCGCACCCCGTTCGGCAATGTGCCAATCGACAGTCCGCGCCTTCATCGGTGTCGCTGCGCGGCTTCGGCAGCCGAAGAAGGAC
CGCAGACCTTCAGCCCATTGACCTCGCTGTTGACCAGCCACATCGCGCCCGAGCTGCTCTATCTTGAAAGCAAATGGGCCTCGCTCGTCTCCTATGGCAT
GACCGTCGACCTGCTCAGGGACGTGCTGCCGATCGACGCCAGGCTCAACCCGAAAACCGTGCGCAATCATCTGCACCGTATGGCGGAGCGCCTCGAATCC
GTACTTGGCGATGAGCGGCCGAACTTCATCGACAGCTGTCCACGCGACTGGAAGGCGCTGCCGCAGCCGGAAGGCGAGATCGTCGTCGGCATCGATGGCG
GCTATGTGCGCGACTGGACCGACAGGAAAAGTCATTTCGGGATTCTGGTCGGCAAGTCATTGCCGCGGGATCGCAACGATCGCTATCTCGGCCTGGTCCA
GAGTTTTGATACCAAGCCGAAACGCCGACTGTGGGAACTCCTGTGTTCGCAAGGCCTGCAGCTGAACCAAGCCGTCACCTTCCTGACCGACGGCGGCGAT
GACGTTCGCAACCTGGCGGCCGAGATGGCGCCCTACGCGGAGCATCATCTGGATTGGTTCCATATCACCATGCGCCTGACGGTGCTTGGCCAGTATGCCA
AAGGTCTCATCCATCACGACCAGGAAGCCGGCGAGCGGATTGCCCGCAATCTGCTGCGGATCAAGCGGTACCTCTGGCATGGCAATTCCCGCGCCGCCCT
GTTCTGGAGCCAGGACCTAGCGGATGACCTCTATGGGCTCGAAGAAGACTGCACCTATCCCAAGCTGAAGGCGTTCTCCCAGGCGCTCGCGGAATTCGTC
ACCTATATCGAGCGCAACGCCCACGCGATCCCGAATTACGGAGAACGCTATCGCAACGACGAGCGCATCGCTACGTCGTTCGTGGAGTCCGCCGTCAATG
TCGTCATCGCCAAGCGCTTTACCAAGAAACAACAGATGCAGTGGTCGCGATGCGGCGCCCATATGCTCCTGCAGATCCGCACGCGAACCCTGGATGGCAC
GCTCCGCGGCCAATTCGAAACGTGGTATCCCGGGCTCGCGGCAAATGAGAACCAGACATCAACTCAAGCTGCGGCCGCCTGAATGCCCCCACAGATTTTC
CTGCTCTC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
669 bp | 222 aa | 99 | 767 | + | No |
Annotation : plasmid pRIA4b ORF-3 family proteinDescription :
ORF sequence :
MLDDEIDSSGGANGSILQLKVRLLDVSPMVWRRVVVPAAMTLKDLHGVFQVVLGWHSLHLYRFRIHAVHYGSWGLGAENPDRTLCSFNFRRSDKFVYEYD
MTDYWKHEVRIDAWLEPQPRNGYPACIGGKGGCPPEECGGPAGYDEFRIEALGLDAHEDLDTMVEILDRIVLQNQPHLLDDDEIRGRLERAVERNRARFD
RRAVNTRLRAGEHHVLKHQQLC
MTDYWKHEVRIDAWLEPQPRNGYPACIGGKGGCPPEECGGPAGYDEFRIEALGLDAHEDLDTMVEILDRIVLQNQPHLLDDDEIRGRLERAVERNRARFD
RRAVNTRLRAGEHHVLKHQQLC
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1422 bp | 473 aa | 861 | 2282 | + | No |
Chemistry : DDE
ORF sequence :
MRVEVRLRVVGDAGEIICDDANVLVIDKRHDRLEAIGLSLDEAKEFLAGVQQHLVAAQAAAFAAGRRCCTHCGRSLRRKGRATLTFRTPFGNVPIDSPRL
HRCRCAASAAEEGPQTFSPLTSLLTSHIAPELLYLESKWASLVSYGMTVDLLRDVLPIDARLNPKTVRNHLHRMAERLESVLGDERPNFIDSCPRDWKAL
PQPEGEIVVGIDGGYVRDWTDRKSHFGILVGKSLPRDRNDRYLGLVQSFDTKPKRRLWELLCSQGLQLNQAVTFLTDGGDDVRNLAAEMAPYAEHHLDWF
HITMRLTVLGQYAKGLIHHDQEAGERIARNLLRIKRYLWHGNSRAALFWSQDLADDLYGLEEDCTYPKLKAFSQALAEFVTYIERNAHAIPNYGERYRND
ERIATSFVESAVNVVIAKRFTKKQQMQWSRCGAHMLLQIRTRTLDGTLRGQFETWYPGLAANENQTSTQAAAA
HRCRCAASAAEEGPQTFSPLTSLLTSHIAPELLYLESKWASLVSYGMTVDLLRDVLPIDARLNPKTVRNHLHRMAERLESVLGDERPNFIDSCPRDWKAL
PQPEGEIVVGIDGGYVRDWTDRKSHFGILVGKSLPRDRNDRYLGLVQSFDTKPKRRLWELLCSQGLQLNQAVTFLTDGGDDVRNLAAEMAPYAEHHLDWF
HITMRLTVLGQYAKGLIHHDQEAGERIARNLLRIKRYLWHGNSRAALFWSQDLADDLYGLEEDCTYPKLKAFSQALAEFVTYIERNAHAIPNYGERYRND
ERIATSFVESAVNVVIAKRFTKKQQMQWSRCGAHMLLQIRTRTLDGTLRGQFETWYPGLAANENQTSTQAAAA
Blast result :
Comments
ISMal1 is 69% aa (ORFB : the transposase) similar to ISAzs26.
ORFA is a passenger gene annotated as plasmid pRiA4b ORF-3 family protein.
ORFA is a passenger gene annotated as plasmid pRiA4b ORF-3 family protein.
References
1] ISfinder annotation (2013)
2] Zhou,M., Chen,W., Chen,H. and Wei,G. (2011) Direct submission GenBank.
2] Zhou,M., Chen,W., Chen,H. and Wei,G. (2011) Direct submission GenBank.