ISMfu2

  • Family ISKra4
  • Group ISKra4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_015711 ND Myxococcus fulvus
Myxococcus fulvus HW-1
DNA section
IS Length : 1554 bp

Ends


IR Length : 17/22

IRL : GGGTCTGGATCCGATCCTGAGCGCTGGGTGAGCTAACAAGCCATCGAGCG
IRR : GGGTGTGGCTCCCATACTGATCATGCTGCGCGCCGTACCTCGGCCCTCTG

Insertion site


Left flankDirect repeatRight flankDR Length
TGCCGAGCCTCCTCATCCGCTCCTATGG8
GCAGAAAAGAGGGAGGAGGAGGGAGGG GGGG9
ACGGCAGAGAGGCTCTGGAGTGGTGCTT8

DNA sequence

GGGTCTGGATCCGATCCTGAGCGCTGGGTGAGCTAACAAGCCATCGAGCGGTCGCGAGCCTGTTCATCGGCAAGGTGCGAGCCTTCGGGTGGGTTATCTC
GACGGAGGTGTGCGCGTGTCGAAGGTGATGCTTGAGGTACCCGAGGAAGTCGCGAAGTTGCTCAAAGTCATGGAGGCGAAGCTGCGGCAGGAGGGCGCGG
CGGGGAAAAGCTTCGGGGAAGTGGACCCGGAAGGCGCGTTGAAGGCCATTGATGAGGCGGCCGCGGCGTTGCAGTGCGATGCGAAGCGGAGGTTGCTTCA
AGGCTACGACGTCGACGCCCCCCGTCTCCAACTCGCAGGCCAGCTCCACTCCCGGGTCGGCCGGTACACGGCGACGTACAAGACGCGGCAAGGGCCTGTC
GAAGTAGAGCGAAGCCTCTATCGACAGGTAGGGGTGAGAAACGGGCCCACGGTGGACACCGTCAGCCTGCGCGCTGGGTGCGTGGCCGATGGGTGGATGC
CCGAGGCGGCAGTGCCCATGGCGTACCTGCTGGCCCGGGGGACCTCGCGAGAGGCGGAAGCGACGGCGCGCCAGATGGGCGTGCTGCCCTACTGCCGAGC
CTCGTTCGAGCGGGTGGGGCATGAGGTGGGAGCGCTGTACGGCGGCCAGCGGTCTCGGGTGGAGGTGGTGCTGGCCCAGGAGATGCAAGTGCCCCGAGGC
ACCCGCGGCGTGAGCGTCAGCATGGACAGGGTGGCCGTGCCGATGGAGGAGCCGAAGAAGCGGCCGGTGGGCCGCCCTCGCAAGGGCGCCCCCACGCGCC
CGGTGGACGTCGTCTGGCGCATGGCCTACGCCGCCTGCCTCACCTTCCATGATGCCCACGGCGAAGCCCTGGGCACCATCCGCTACGGACGGATGCCACG
GGGCGAGGCCCGAGAGGTGGCAGAACGCCTGGCCCGCGACGTCCAGGCCCTGGTTTCCAGGCGGCGCGGCCTGTACGTCGCCGTCCTCACCGACGGTGCC
CCTGAGTTGCACGCCTTGCTGGACGAGGCGCTGGCCACCCATGCCCCGGCGGCCAAGAAGCCGGTGCGTCTGGTGGACTTCTGGCACCTGATGGAGAAGC
TCGGGGCTGCGGCTCGCGTGGTGGCTGGAGAAGAGACGGCCTCCGCGCTGCGTGAGAAATGGAAGCTGTCCCTGCTCAACACGCCCGGGGCGGCGTGGGC
CATTGCCATGGCGTTGCACGCCAGCGGCAAGCGGCATGTCGTCCTCGGTGACGGCAAACCGGTGCACGAGGCCCTCACCTACCTGGAGAACCACGGCGAA
CGAATGCACTATGCCGAGGCGCGCGCACGGGGACTTCCCATTGGCAGCGGCAACGTGGAGGCTACCTGCAAGTCTCTCGTCTCCCTGCGCATGAAGCGCC
CTGGCGCCCGCTGGAAGGAGGCGTCCGGCCAGCACATCCTGGACTTGCGCGCCCTGGTGCTCTCGGAACGGTGGGACGCGGCCATGAACCTCACGCTTGC
GCCGCAGAGGGCCGAGGTACGGCGCGCAGCATGATCAGTATGGGAGCCACACCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1419 bp472 aa1161534+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSKVMLEVPEEVAKLLKVMEAKLRQEGAAGKSFGEVDPEGALKAIDEAAAALQCDAKRRLLQGYDVDAPRLQLAGQLHSRVGRYTATYKTRQGPVEVERS
LYRQVGVRNGPTVDTVSLRAGCVADGWMPEAAVPMAYLLARGTSREAEATARQMGVLPYCRASFERVGHEVGALYGGQRSRVEVVLAQEMQVPRGTRGVS
VSMDRVAVPMEEPKKRPVGRPRKGAPTRPVDVVWRMAYAACLTFHDAHGEALGTIRYGRMPRGEAREVAERLARDVQALVSRRRGLYVAVLTDGAPELHA
LLDEALATHAPAAKKPVRLVDFWHLMEKLGAAARVVAGEETASALREKWKLSLLNTPGAAWAIAMALHASGKRHVVLGDGKPVHEALTYLENHGERMHYA
EARARGLPIGSGNVEATCKSLVSLRMKRPGARWKEASGQHILDLRALVLSERWDAAMNLTLAPQRAEVRRAA

 

Blast result :
Comments
References
1] Guérillot R, Glaser P, (2013) Diversity of bacterial prokaryotic mutator like transposase, association with conjugation conjugative elements and insertion specificity (on preparation).
2] Li,Z.F., Li,X., Liu,H., Liu,X., Han,K., Wu,Z.H., Hu,W., Li,F.F. and Li,Y.Z. (2011) J. Bacteriol. 193 (18), 5015-5016.