ISMfu2
- Family ISKra4
- Group ISKra4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_015711 | ND | Myxococcus fulvus | Myxococcus fulvus HW-1 |
DNA section
IS Length : 1554 bp
Ends
IR Length : 17/22
IRL : GGGTCTGGATCCGATCCTGAGCGCTGGGTGAGCTAACAAGCCATCGAGCG
IRR : GGGTGTGGCTCCCATACTGATCATGCTGCGCGCCGTACCTCGGCCCTCTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGCCGAGCCT | CCTCATCC | GCTCCTATGG | 8 |
GCAGAAAAGA | GGGAGGAGG | AGGGAGGG GGGG | 9 |
ACGGCAGAGA | GGCTCTGG | AGTGGTGCTT | 8 |
DNA sequence
GGGTCTGGATCCGATCCTGAGCGCTGGGTGAGCTAACAAGCCATCGAGCGGTCGCGAGCCTGTTCATCGGCAAGGTGCGAGCCTTCGGGTGGGTTATCTC
GACGGAGGTGTGCGCGTGTCGAAGGTGATGCTTGAGGTACCCGAGGAAGTCGCGAAGTTGCTCAAAGTCATGGAGGCGAAGCTGCGGCAGGAGGGCGCGG
CGGGGAAAAGCTTCGGGGAAGTGGACCCGGAAGGCGCGTTGAAGGCCATTGATGAGGCGGCCGCGGCGTTGCAGTGCGATGCGAAGCGGAGGTTGCTTCA
AGGCTACGACGTCGACGCCCCCCGTCTCCAACTCGCAGGCCAGCTCCACTCCCGGGTCGGCCGGTACACGGCGACGTACAAGACGCGGCAAGGGCCTGTC
GAAGTAGAGCGAAGCCTCTATCGACAGGTAGGGGTGAGAAACGGGCCCACGGTGGACACCGTCAGCCTGCGCGCTGGGTGCGTGGCCGATGGGTGGATGC
CCGAGGCGGCAGTGCCCATGGCGTACCTGCTGGCCCGGGGGACCTCGCGAGAGGCGGAAGCGACGGCGCGCCAGATGGGCGTGCTGCCCTACTGCCGAGC
CTCGTTCGAGCGGGTGGGGCATGAGGTGGGAGCGCTGTACGGCGGCCAGCGGTCTCGGGTGGAGGTGGTGCTGGCCCAGGAGATGCAAGTGCCCCGAGGC
ACCCGCGGCGTGAGCGTCAGCATGGACAGGGTGGCCGTGCCGATGGAGGAGCCGAAGAAGCGGCCGGTGGGCCGCCCTCGCAAGGGCGCCCCCACGCGCC
CGGTGGACGTCGTCTGGCGCATGGCCTACGCCGCCTGCCTCACCTTCCATGATGCCCACGGCGAAGCCCTGGGCACCATCCGCTACGGACGGATGCCACG
GGGCGAGGCCCGAGAGGTGGCAGAACGCCTGGCCCGCGACGTCCAGGCCCTGGTTTCCAGGCGGCGCGGCCTGTACGTCGCCGTCCTCACCGACGGTGCC
CCTGAGTTGCACGCCTTGCTGGACGAGGCGCTGGCCACCCATGCCCCGGCGGCCAAGAAGCCGGTGCGTCTGGTGGACTTCTGGCACCTGATGGAGAAGC
TCGGGGCTGCGGCTCGCGTGGTGGCTGGAGAAGAGACGGCCTCCGCGCTGCGTGAGAAATGGAAGCTGTCCCTGCTCAACACGCCCGGGGCGGCGTGGGC
CATTGCCATGGCGTTGCACGCCAGCGGCAAGCGGCATGTCGTCCTCGGTGACGGCAAACCGGTGCACGAGGCCCTCACCTACCTGGAGAACCACGGCGAA
CGAATGCACTATGCCGAGGCGCGCGCACGGGGACTTCCCATTGGCAGCGGCAACGTGGAGGCTACCTGCAAGTCTCTCGTCTCCCTGCGCATGAAGCGCC
CTGGCGCCCGCTGGAAGGAGGCGTCCGGCCAGCACATCCTGGACTTGCGCGCCCTGGTGCTCTCGGAACGGTGGGACGCGGCCATGAACCTCACGCTTGC
GCCGCAGAGGGCCGAGGTACGGCGCGCAGCATGATCAGTATGGGAGCCACACCC
GACGGAGGTGTGCGCGTGTCGAAGGTGATGCTTGAGGTACCCGAGGAAGTCGCGAAGTTGCTCAAAGTCATGGAGGCGAAGCTGCGGCAGGAGGGCGCGG
CGGGGAAAAGCTTCGGGGAAGTGGACCCGGAAGGCGCGTTGAAGGCCATTGATGAGGCGGCCGCGGCGTTGCAGTGCGATGCGAAGCGGAGGTTGCTTCA
AGGCTACGACGTCGACGCCCCCCGTCTCCAACTCGCAGGCCAGCTCCACTCCCGGGTCGGCCGGTACACGGCGACGTACAAGACGCGGCAAGGGCCTGTC
GAAGTAGAGCGAAGCCTCTATCGACAGGTAGGGGTGAGAAACGGGCCCACGGTGGACACCGTCAGCCTGCGCGCTGGGTGCGTGGCCGATGGGTGGATGC
CCGAGGCGGCAGTGCCCATGGCGTACCTGCTGGCCCGGGGGACCTCGCGAGAGGCGGAAGCGACGGCGCGCCAGATGGGCGTGCTGCCCTACTGCCGAGC
CTCGTTCGAGCGGGTGGGGCATGAGGTGGGAGCGCTGTACGGCGGCCAGCGGTCTCGGGTGGAGGTGGTGCTGGCCCAGGAGATGCAAGTGCCCCGAGGC
ACCCGCGGCGTGAGCGTCAGCATGGACAGGGTGGCCGTGCCGATGGAGGAGCCGAAGAAGCGGCCGGTGGGCCGCCCTCGCAAGGGCGCCCCCACGCGCC
CGGTGGACGTCGTCTGGCGCATGGCCTACGCCGCCTGCCTCACCTTCCATGATGCCCACGGCGAAGCCCTGGGCACCATCCGCTACGGACGGATGCCACG
GGGCGAGGCCCGAGAGGTGGCAGAACGCCTGGCCCGCGACGTCCAGGCCCTGGTTTCCAGGCGGCGCGGCCTGTACGTCGCCGTCCTCACCGACGGTGCC
CCTGAGTTGCACGCCTTGCTGGACGAGGCGCTGGCCACCCATGCCCCGGCGGCCAAGAAGCCGGTGCGTCTGGTGGACTTCTGGCACCTGATGGAGAAGC
TCGGGGCTGCGGCTCGCGTGGTGGCTGGAGAAGAGACGGCCTCCGCGCTGCGTGAGAAATGGAAGCTGTCCCTGCTCAACACGCCCGGGGCGGCGTGGGC
CATTGCCATGGCGTTGCACGCCAGCGGCAAGCGGCATGTCGTCCTCGGTGACGGCAAACCGGTGCACGAGGCCCTCACCTACCTGGAGAACCACGGCGAA
CGAATGCACTATGCCGAGGCGCGCGCACGGGGACTTCCCATTGGCAGCGGCAACGTGGAGGCTACCTGCAAGTCTCTCGTCTCCCTGCGCATGAAGCGCC
CTGGCGCCCGCTGGAAGGAGGCGTCCGGCCAGCACATCCTGGACTTGCGCGCCCTGGTGCTCTCGGAACGGTGGGACGCGGCCATGAACCTCACGCTTGC
GCCGCAGAGGGCCGAGGTACGGCGCGCAGCATGATCAGTATGGGAGCCACACCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1419 bp | 472 aa | 116 | 1534 | + | No |
Chemistry : DDE
ORF sequence :
MSKVMLEVPEEVAKLLKVMEAKLRQEGAAGKSFGEVDPEGALKAIDEAAAALQCDAKRRLLQGYDVDAPRLQLAGQLHSRVGRYTATYKTRQGPVEVERS
LYRQVGVRNGPTVDTVSLRAGCVADGWMPEAAVPMAYLLARGTSREAEATARQMGVLPYCRASFERVGHEVGALYGGQRSRVEVVLAQEMQVPRGTRGVS
VSMDRVAVPMEEPKKRPVGRPRKGAPTRPVDVVWRMAYAACLTFHDAHGEALGTIRYGRMPRGEAREVAERLARDVQALVSRRRGLYVAVLTDGAPELHA
LLDEALATHAPAAKKPVRLVDFWHLMEKLGAAARVVAGEETASALREKWKLSLLNTPGAAWAIAMALHASGKRHVVLGDGKPVHEALTYLENHGERMHYA
EARARGLPIGSGNVEATCKSLVSLRMKRPGARWKEASGQHILDLRALVLSERWDAAMNLTLAPQRAEVRRAA
LYRQVGVRNGPTVDTVSLRAGCVADGWMPEAAVPMAYLLARGTSREAEATARQMGVLPYCRASFERVGHEVGALYGGQRSRVEVVLAQEMQVPRGTRGVS
VSMDRVAVPMEEPKKRPVGRPRKGAPTRPVDVVWRMAYAACLTFHDAHGEALGTIRYGRMPRGEAREVAERLARDVQALVSRRRGLYVAVLTDGAPELHA
LLDEALATHAPAAKKPVRLVDFWHLMEKLGAAARVVAGEETASALREKWKLSLLNTPGAAWAIAMALHASGKRHVVLGDGKPVHEALTYLENHGERMHYA
EARARGLPIGSGNVEATCKSLVSLRMKRPGARWKEASGQHILDLRALVLSERWDAAMNLTLAPQRAEVRRAA
Blast result :
Comments
References
1] Guérillot R, Glaser P, (2013) Diversity of bacterial prokaryotic mutator like transposase, association with conjugation conjugative elements and insertion specificity (on preparation).
2] Li,Z.F., Li,X., Liu,H., Liu,X., Han,K., Wu,Z.H., Hu,W., Li,F.F. and Li,Y.Z. (2011) J. Bacteriol. 193 (18), 5015-5016.
2] Li,Z.F., Li,X., Liu,H., Liu,X., Han,K., Wu,Z.H., Hu,W., Li,F.F. and Li,Y.Z. (2011) J. Bacteriol. 193 (18), 5015-5016.