ISMme1
- Family ISAzo13
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_CAUM01000027 | ND | Mesorhizobium metallidurans | Mesorhizobium metallidurans STM 2683 |
DNA section
IS Length : 1324 bp
Ends
IR Length : 15/18
IRL : GGGCTCGTTGATAAATAACTGAATCGGTATGCGGGTTTTTTGGGTTGGGG
IRR : GGTCTTGTTGATAAATTATCGCACCATATTGGGTTGCGGTTTGATGGTGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCCAGCGCTC | TAA | GGTTTATCCC | 3 |
DNA sequence
GGGCTCGTTGATAAATAACTGAATCGGTATGCGGGTTTTTTGGGTTGGGGGATTCCCCTGCCGAATCGGCGCAGCTAGATTCCGGTCTGTGATCGACGAT
AGCGCCATTCGGTTGCGGTTTGGAGCCCTTGATCCATTGTTGGACGAGCGGGGTCGGCGGCGTTTTGCGGCGGCCGAGGCGCTGGCGGCCGGCCATGGCG
GCGTGATGGCGGTCTCGCGGGCGACGGGGATTGCGCGCAGCACGATCACTCGGGGCCTGGCCGAACTGCGCGAGGAAGCGGTCCTGGCAGTCCCTCTGGA
TCGGGTGCGCCGGGCGGGCGGTGGCAGAAAGTCCCTGACGGCGACGGACGAGACGCTGCTGGGAGATCTCCAGGCGCTCGTCGATCCCGTCACGCGCGGT
GATCCGATGGCGCCGCTGCTGTGGACCGCCAAAAGCCTGCGCAACCTGGCCGCCGAGTTGCAGGCGTGCGGGCACCGCATCGGCCATAATGTGGTGGCCA
CGCTGTTGCGCGAGCTGGGCTACAGCCTGCAGGCCAATCGCAAGACGCTCGAAGGCGCCAGCCACCCCGACCGCGACGCCCAGTTCCACTACATCAACGA
TCAGGTGAAAGCGGCGCTGGCGGCCGATCAGCCCGCCATCTCGGTCGATACCAAGAAGAAGGAACTGGTCGGCGACTTCAAGAACAACGGCCGGGAATAT
CGTCCCAAGGGCGATCCGGAAAAGGTCCGGGTGCATGACTTCAAGATCCCCGAGCTTGGCCGGGCGGCACCCTACGGGGTCTACGACATCGCCGACAATG
CCGGTTGGGTCAGCGTCGGTATCGACCATGATACCGCCAGCTTCGCCGTCAACTCGATCCGCCGCTGGTGGCAGACCATGGGCCAGCAACGCTATCCCAA
CGCCCGACAACTGCTGATCTCCGCCGATGGCGGCGGCAGCAACGGCTCACGCGTACGGCTGTGGAAGATCGAGCTTCAGAGCCTCGCCAACGAACTCGAT
ATCGACATCACCGTCTGTCATCTCCCGCCCGGCGCCAGCAAGTGGAACAAGATCGAGCACCGCCTCTTCTCGTTCATCACCCAGAACTGGCGCGGCCGGC
CGCTCGTCAGCTACCAGACAATCGTTCAGTTGATTGCAGCGACAACCACCAAAGCCGGCCTCACCGTCCGCAGCGAACTCGATACCAACGCCTACCCAAA
GGGCATCAAGGTCGCCGATGCCGACATCGACGCCCTCAATCTCCATCGCCACGACTTCCATGGCGACTGGAATTACACCATCAAACCGCAACCCAATATG
GTGCGATAATTTATCAACAAGACC
AGCGCCATTCGGTTGCGGTTTGGAGCCCTTGATCCATTGTTGGACGAGCGGGGTCGGCGGCGTTTTGCGGCGGCCGAGGCGCTGGCGGCCGGCCATGGCG
GCGTGATGGCGGTCTCGCGGGCGACGGGGATTGCGCGCAGCACGATCACTCGGGGCCTGGCCGAACTGCGCGAGGAAGCGGTCCTGGCAGTCCCTCTGGA
TCGGGTGCGCCGGGCGGGCGGTGGCAGAAAGTCCCTGACGGCGACGGACGAGACGCTGCTGGGAGATCTCCAGGCGCTCGTCGATCCCGTCACGCGCGGT
GATCCGATGGCGCCGCTGCTGTGGACCGCCAAAAGCCTGCGCAACCTGGCCGCCGAGTTGCAGGCGTGCGGGCACCGCATCGGCCATAATGTGGTGGCCA
CGCTGTTGCGCGAGCTGGGCTACAGCCTGCAGGCCAATCGCAAGACGCTCGAAGGCGCCAGCCACCCCGACCGCGACGCCCAGTTCCACTACATCAACGA
TCAGGTGAAAGCGGCGCTGGCGGCCGATCAGCCCGCCATCTCGGTCGATACCAAGAAGAAGGAACTGGTCGGCGACTTCAAGAACAACGGCCGGGAATAT
CGTCCCAAGGGCGATCCGGAAAAGGTCCGGGTGCATGACTTCAAGATCCCCGAGCTTGGCCGGGCGGCACCCTACGGGGTCTACGACATCGCCGACAATG
CCGGTTGGGTCAGCGTCGGTATCGACCATGATACCGCCAGCTTCGCCGTCAACTCGATCCGCCGCTGGTGGCAGACCATGGGCCAGCAACGCTATCCCAA
CGCCCGACAACTGCTGATCTCCGCCGATGGCGGCGGCAGCAACGGCTCACGCGTACGGCTGTGGAAGATCGAGCTTCAGAGCCTCGCCAACGAACTCGAT
ATCGACATCACCGTCTGTCATCTCCCGCCCGGCGCCAGCAAGTGGAACAAGATCGAGCACCGCCTCTTCTCGTTCATCACCCAGAACTGGCGCGGCCGGC
CGCTCGTCAGCTACCAGACAATCGTTCAGTTGATTGCAGCGACAACCACCAAAGCCGGCCTCACCGTCCGCAGCGAACTCGATACCAACGCCTACCCAAA
GGGCATCAAGGTCGCCGATGCCGACATCGACGCCCTCAATCTCCATCGCCACGACTTCCATGGCGACTGGAATTACACCATCAAACCGCAACCCAATATG
GTGCGATAATTTATCAACAAGACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1221 bp | 406 aa | 89 | 1309 | + | No |
Chemistry : Unknow
ORF sequence :
MIDDSAIRLRFGALDPLLDERGRRRFAAAEALAAGHGGVMAVSRATGIARSTITRGLAELREEAVLAVPLDRVRRAGGGRKSLTATDETLLGDLQALVDP
VTRGDPMAPLLWTAKSLRNLAAELQACGHRIGHNVVATLLRELGYSLQANRKTLEGASHPDRDAQFHYINDQVKAALAADQPAISVDTKKKELVGDFKNN
GREYRPKGDPEKVRVHDFKIPELGRAAPYGVYDIADNAGWVSVGIDHDTASFAVNSIRRWWQTMGQQRYPNARQLLISADGGGSNGSRVRLWKIELQSLA
NELDIDITVCHLPPGASKWNKIEHRLFSFITQNWRGRPLVSYQTIVQLIAATTTKAGLTVRSELDTNAYPKGIKVADADIDALNLHRHDFHGDWNYTIKP
QPNMVR
VTRGDPMAPLLWTAKSLRNLAAELQACGHRIGHNVVATLLRELGYSLQANRKTLEGASHPDRDAQFHYINDQVKAALAADQPAISVDTKKKELVGDFKNN
GREYRPKGDPEKVRVHDFKIPELGRAAPYGVYDIADNAGWVSVGIDHDTASFAVNSIRRWWQTMGQQRYPNARQLLISADGGGSNGSRVRLWKIELQSLA
NELDIDITVCHLPPGASKWNKIEHRLFSFITQNWRGRPLVSYQTIVQLIAATTTKAGLTVRSELDTNAYPKGIKVADADIDALNLHRHDFHGDWNYTIKP
QPNMVR
Blast result :
Comments
ISMme1 is 75% aa similar to ISDssp1.
References
1] ISfinder annotation (2013)
2] Genoscope, C.E.A. (2013) Direct submission GenBank.
2] Genoscope, C.E.A. (2013) Direct submission GenBank.