ISMama1
- Family IS256
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_008576 | ND | Magnetococcus marinus | Magnetococcus marinus MC-1 |
DNA section
IS Length : 1425 bp
Ends
IR Length : 29/39
IRL : GGGATGTCCCGCTGAATGTTGAAAATTGAGGGTGGGTGTCGATCGCCCTG
IRR : GGGATTGTCCCGAGCTCTGTTGAAATTCGGATGGGTGCCTGATCCATCTT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GCCAGGATTG | CAGATCATCA | 0 |
DNA sequence
GGGATGTCCCGCTGAATGTTGAAAATTGAGGGTGGGTGTCGATCGCCCTGCAGTGCGCTATGCTCTGCTTGGCGACCAAACCAATCAAGGAGATCGACAC
CCATGAGTAAGAATAGCGTAAATCAAGAACTGACCGTAGTCTCCACAGAAACACGAGAAGCTTTTGACGAATTGAGCGAGAGTTTTGACCGATTTTGCCT
ACGAACCGGACTGGAGGCACTCGAAACGCTGATGGCCGAGGAAGTGGAGCAGTTGTGTGGCCCCAGTCACGCACGAGATGACCAGCAAGCTTATCGATGG
GGTAGCACCAAGGGCGAGGTCCCGTTTCATGGCGGCAAGGTTCAGATAAAGCGACCCCGTGTGCGTGATAAATCCGGCAAAGAGAAGCCTTTGGATAGCT
ACCTGGAGGCAAGGGACCACGCCTTATTGAGCCGCTGGGCCATGAACCAGATGCTTTTGGGCGTAACAACCCGGCGTTTTGGTCGCTCGGTGCGCCTACC
CGAAGGAGATATCCCACGCCAGGATGGGGATGGCACATCCAAATCCGCTGTATCCCGTCGTTTTGTGGCCCTTAGCCAAGTTAAAATGCAGGAGTGGTTG
CAACAGGACCTATCGGATTTGGACCTGTTGGTGATCCAAATTGACGGTTTGGTGGTGAACAAACACTCTATGATAGCGGCCATGGGTATTGACACCAAAG
GTATCAAGCACCCACTGTCTTTGATGGAGGGAGCCACTGAAAACCACGTGGTGGTACAGGCTCTTCTGGATGATCTTATTGAGCGGGGTGTGAATCCAAA
ACGCGCCATGTTCTTCTTACTGGATGGGTCCAAAGCGCTGAGTAAGGCAGTGCGCAACACTTACGGCCAATTGGCGCTGATTCAGCGTTGTCAGGTTCAT
AAGTCGCGGAATATCCTCGACCGACTGGATGAGGCCATGAAGATTTCCGTGCGCAAGGCTCTTAGACAGGCGTGGGATGCTGAGAGCCCAGAATTGGCTG
AAAAACTGCTGCGCAATCTGGCCAATCGCCTAAAATCAACCAATCAGCAGGCTGCAGCCAGTATTCTGGAGGGGTTGGATGAGATTCTTTGCCTGATTCG
GCTCGGATTACCACCAGAACTGCGCAAGGCGCTGGCTACCACCAATGCCATCGAAAATATGATGGGAACCATTCGGCGTGTGACGCGCAACGTCAAGCGG
TGGAAAAACAGCAATATGCGCCTCAGGTGGACTGCTGCCGGTATGCTGGAGGCCAAAAAAGGGTTCCAGCGTCTACGGGCCTATAGACAGCTACCCCACT
TAAAGGCCAAACTTGAGGAACATACGCAAAAGGTCTTGGCGGAAACTTCGCTTCAAAAGCAATCTGAGGCCGCGTAAGATGGATCAGGCACCCATCCGAA
TTTCAACAGAGCTCGGGACAATCCC
CCATGAGTAAGAATAGCGTAAATCAAGAACTGACCGTAGTCTCCACAGAAACACGAGAAGCTTTTGACGAATTGAGCGAGAGTTTTGACCGATTTTGCCT
ACGAACCGGACTGGAGGCACTCGAAACGCTGATGGCCGAGGAAGTGGAGCAGTTGTGTGGCCCCAGTCACGCACGAGATGACCAGCAAGCTTATCGATGG
GGTAGCACCAAGGGCGAGGTCCCGTTTCATGGCGGCAAGGTTCAGATAAAGCGACCCCGTGTGCGTGATAAATCCGGCAAAGAGAAGCCTTTGGATAGCT
ACCTGGAGGCAAGGGACCACGCCTTATTGAGCCGCTGGGCCATGAACCAGATGCTTTTGGGCGTAACAACCCGGCGTTTTGGTCGCTCGGTGCGCCTACC
CGAAGGAGATATCCCACGCCAGGATGGGGATGGCACATCCAAATCCGCTGTATCCCGTCGTTTTGTGGCCCTTAGCCAAGTTAAAATGCAGGAGTGGTTG
CAACAGGACCTATCGGATTTGGACCTGTTGGTGATCCAAATTGACGGTTTGGTGGTGAACAAACACTCTATGATAGCGGCCATGGGTATTGACACCAAAG
GTATCAAGCACCCACTGTCTTTGATGGAGGGAGCCACTGAAAACCACGTGGTGGTACAGGCTCTTCTGGATGATCTTATTGAGCGGGGTGTGAATCCAAA
ACGCGCCATGTTCTTCTTACTGGATGGGTCCAAAGCGCTGAGTAAGGCAGTGCGCAACACTTACGGCCAATTGGCGCTGATTCAGCGTTGTCAGGTTCAT
AAGTCGCGGAATATCCTCGACCGACTGGATGAGGCCATGAAGATTTCCGTGCGCAAGGCTCTTAGACAGGCGTGGGATGCTGAGAGCCCAGAATTGGCTG
AAAAACTGCTGCGCAATCTGGCCAATCGCCTAAAATCAACCAATCAGCAGGCTGCAGCCAGTATTCTGGAGGGGTTGGATGAGATTCTTTGCCTGATTCG
GCTCGGATTACCACCAGAACTGCGCAAGGCGCTGGCTACCACCAATGCCATCGAAAATATGATGGGAACCATTCGGCGTGTGACGCGCAACGTCAAGCGG
TGGAAAAACAGCAATATGCGCCTCAGGTGGACTGCTGCCGGTATGCTGGAGGCCAAAAAAGGGTTCCAGCGTCTACGGGCCTATAGACAGCTACCCCACT
TAAAGGCCAAACTTGAGGAACATACGCAAAAGGTCTTGGCGGAAACTTCGCTTCAAAAGCAATCTGAGGCCGCGTAAGATGGATCAGGCACCCATCCGAA
TTTCAACAGAGCTCGGGACAATCCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1206 bp | 401 aa | 172 | 1377 | + | No |
Chemistry : DDE
ORF sequence :
MSESFDRFCLRTGLEALETLMAEEVEQLCGPSHARDDQQAYRWGSTKGEVPFHGGKVQIKRPRVRDKSGKEKPLDSYLEARDHALLSRWAMNQMLLGVTT
RRFGRSVRLPEGDIPRQDGDGTSKSAVSRRFVALSQVKMQEWLQQDLSDLDLLVIQIDGLVVNKHSMIAAMGIDTKGIKHPLSLMEGATENHVVVQALLD
DLIERGVNPKRAMFFLLDGSKALSKAVRNTYGQLALIQRCQVHKSRNILDRLDEAMKISVRKALRQAWDAESPELAEKLLRNLANRLKSTNQQAAASILE
GLDEILCLIRLGLPPELRKALATTNAIENMMGTIRRVTRNVKRWKNSNMRLRWTAAGMLEAKKGFQRLRAYRQLPHLKAKLEEHTQKVLAETSLQKQSEA
A
RRFGRSVRLPEGDIPRQDGDGTSKSAVSRRFVALSQVKMQEWLQQDLSDLDLLVIQIDGLVVNKHSMIAAMGIDTKGIKHPLSLMEGATENHVVVQALLD
DLIERGVNPKRAMFFLLDGSKALSKAVRNTYGQLALIQRCQVHKSRNILDRLDEAMKISVRKALRQAWDAESPELAEKLLRNLANRLKSTNQQAAASILE
GLDEILCLIRLGLPPELRKALATTNAIENMMGTIRRVTRNVKRWKNSNMRLRWTAAGMLEAKKGFQRLRAYRQLPHLKAKLEEHTQKVLAETSLQKQSEA
A
Blast result :
Comments
ISMama1 is 73% aa similar to ISApr10.
References
1] ISfinder annotation (2013)
2] Bazylinski,D.A., Williams,T.J., Lefevre,C.T., Berg,R.J., Zhang,C.L., Bowser,S.S., Dean,A.J. and Beveridge,T.J. (2012) Int. J. Syst. Evol. Microbiol.
3] Schubbe,S., Williams,T.J., Xie,G., Kiss,H.E., Brettin,T.S., Martinez,D., Ross,C.A., Schuler,D., Cox,B.L., Nealson,K.H. and Bazylinski,D.A. (2009) Appl. Environ. Microbiol. 75 (14), 4835-4852.
2] Bazylinski,D.A., Williams,T.J., Lefevre,C.T., Berg,R.J., Zhang,C.L., Bowser,S.S., Dean,A.J. and Beveridge,T.J. (2012) Int. J. Syst. Evol. Microbiol.
3] Schubbe,S., Williams,T.J., Xie,G., Kiss,H.E., Brettin,T.S., Martinez,D., Ross,C.A., Schuler,D., Cox,B.L., Nealson,K.H. and Bazylinski,D.A. (2009) Appl. Environ. Microbiol. 75 (14), 4835-4852.