ISMyo1
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_020275 | ND | Mycobacterium yongonense | Mycobacterium yongonense 05-1390 plasmid pMyong1 |
DNA section
IS Length : 1472 bp
Ends
IR Length : 33/41
IRL : GAGGTTGTCCCGGTCTTCGTGGAATTTGAGGTGGCGGTCCCTGACCTGAG
IRR : GAGGGTGTCCCGGGTCTCGTGGATTTTCGGTGACGGTCCCATGGTGAACT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGTGGGCTGG | TGCAGGTC | GGCGGTCATC | 8 |
DNA sequence
GAGGTTGTCCCGGTCTTCGTGGAATTTGAGGTGGCGGTCCCTGACCTGAGGCCTGCCGGATGGTAGGTCTCGGGTGATCCGACCAAAGAACACCCACCAG
GAAAGGGACCGCTTGTGAAGACCGTACCGACTGTTCGTCTGGCTGACACTGCTGATGCGGTGATGTTGCCTGAGCTGCCGGAGGAGATCGCGTTGGCGAT
GTGCGATATCGCCGGTGCGGCTCGGGAGGGGCTGTTGGCGATGAGCGTGGCCGCCGGGCTTGCGGTGATGCAGGCCATGTTCGAGGCCGAGATCAGCGAG
TCCTGCGGGCCGAAGGGCAAGCATGATCCGGACCGCACTGCGGTGCGCCACGGCACTCAGAAGGGCTCGGTCACGTTGGGTGGGCGGCGCATTGCGGTGG
GCCGGCCGCGGGCACGCACCACCGACGGACACGAGGTTCCCCTGATCAGCTACACCCATTTCGCTGCCGATGACCTGCTCACGCAGGTGGTGATGGAGCG
GATGGCCGCCGGGGTGGCCACCCGCCGCCACGCCCGGGTTGCCGAGCCGGTCGGCGCGCAGGTCACCGCCGCGTCGAAAGCAATGTCGAAGTCGGCGATC
TCGCGCCGATTCGTGCGTCAAACCCAGACCGCGTTGGCCGAGCTGATGGCCCGCGACCTGTCCGGTGAGGACATCGCGGTGCTGCTGCTGGATGGGGAGC
ACATGGTCGAGCGGTGCGTGGTAGTGGCGTTGGCCATCACCGCCGACGGGACGAAAAAGCCGGTCGGGCTCTGGGACGGATCGACGGAGAACAAGACCGT
GGTTCGATCGTTGCTGGCCGATCTGGTTGCGCGTGGTCTGCGCTTTGATGATGGGCTGTTGGTGGTCCTCGACGGCGCTAAAGCCCTGGCCTCCGCGGTG
CGTGAGGTCTTCGGCGACAAGGCTGCGGTGCAGCGCTGCACCCTGCATAAGCGGCGCAATGTCGCTGCGCACCTGCCCGCCAAGGACCAGGCCTGGGTGG
ACGCCAAGCTGGTCAAGGCCTTCAACCATCCCGACCCCGCCCAAGGACTGCATAACGCCAAACACCTTGCCGCTCAACTGGACAAGAACCATCCCGGTGC
AGCCGCCTCGCTGCGGGAGGGGCTTGAGGAGATGTTCACCGTGGCCCGCCTCGGTATCGACGGTCGCCTGGCGGTCACCCTGACCACCAGCAACCCGATC
GAGTCGATGCTGTCCATCGCCCGCACGACCAACCGTAACGTCACCCGCTGGCGCGATGGGCAGATGGTGTTGCGCTGGACCGCGGCGGGCATGCTCAATG
CCGAACGATCCTTCCGCCGCGTCAAGGGCTACAAACAGATGCCCCAGCTCATCGCCGCGCTGCACCGCCATGCCCACCCCCAAACCGCTACCGACACAAA
AACAGTCAGTGCCGCCGCCTAGAGTTCACCATGGGACCGTCACCGAAAATCCACGAGACCCGGGACACCCTC
GAAAGGGACCGCTTGTGAAGACCGTACCGACTGTTCGTCTGGCTGACACTGCTGATGCGGTGATGTTGCCTGAGCTGCCGGAGGAGATCGCGTTGGCGAT
GTGCGATATCGCCGGTGCGGCTCGGGAGGGGCTGTTGGCGATGAGCGTGGCCGCCGGGCTTGCGGTGATGCAGGCCATGTTCGAGGCCGAGATCAGCGAG
TCCTGCGGGCCGAAGGGCAAGCATGATCCGGACCGCACTGCGGTGCGCCACGGCACTCAGAAGGGCTCGGTCACGTTGGGTGGGCGGCGCATTGCGGTGG
GCCGGCCGCGGGCACGCACCACCGACGGACACGAGGTTCCCCTGATCAGCTACACCCATTTCGCTGCCGATGACCTGCTCACGCAGGTGGTGATGGAGCG
GATGGCCGCCGGGGTGGCCACCCGCCGCCACGCCCGGGTTGCCGAGCCGGTCGGCGCGCAGGTCACCGCCGCGTCGAAAGCAATGTCGAAGTCGGCGATC
TCGCGCCGATTCGTGCGTCAAACCCAGACCGCGTTGGCCGAGCTGATGGCCCGCGACCTGTCCGGTGAGGACATCGCGGTGCTGCTGCTGGATGGGGAGC
ACATGGTCGAGCGGTGCGTGGTAGTGGCGTTGGCCATCACCGCCGACGGGACGAAAAAGCCGGTCGGGCTCTGGGACGGATCGACGGAGAACAAGACCGT
GGTTCGATCGTTGCTGGCCGATCTGGTTGCGCGTGGTCTGCGCTTTGATGATGGGCTGTTGGTGGTCCTCGACGGCGCTAAAGCCCTGGCCTCCGCGGTG
CGTGAGGTCTTCGGCGACAAGGCTGCGGTGCAGCGCTGCACCCTGCATAAGCGGCGCAATGTCGCTGCGCACCTGCCCGCCAAGGACCAGGCCTGGGTGG
ACGCCAAGCTGGTCAAGGCCTTCAACCATCCCGACCCCGCCCAAGGACTGCATAACGCCAAACACCTTGCCGCTCAACTGGACAAGAACCATCCCGGTGC
AGCCGCCTCGCTGCGGGAGGGGCTTGAGGAGATGTTCACCGTGGCCCGCCTCGGTATCGACGGTCGCCTGGCGGTCACCCTGACCACCAGCAACCCGATC
GAGTCGATGCTGTCCATCGCCCGCACGACCAACCGTAACGTCACCCGCTGGCGCGATGGGCAGATGGTGTTGCGCTGGACCGCGGCGGGCATGCTCAATG
CCGAACGATCCTTCCGCCGCGTCAAGGGCTACAAACAGATGCCCCAGCTCATCGCCGCGCTGCACCGCCATGCCCACCCCCAAACCGCTACCGACACAAA
AACAGTCAGTGCCGCCGCCTAGAGTTCACCATGGGACCGTCACCGAAAATCCACGAGACCCGGGACACCCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1308 bp | 435 aa | 115 | 1422 | + | No |
Chemistry : DDE
ORF sequence :
MKTVPTVRLADTADAVMLPELPEEIALAMCDIAGAAREGLLAMSVAAGLAVMQAMFEAEISESCGPKGKHDPDRTAVRHGTQKGSVTLGGRRIAVGRPRA
RTTDGHEVPLISYTHFAADDLLTQVVMERMAAGVATRRHARVAEPVGAQVTAASKAMSKSAISRRFVRQTQTALAELMARDLSGEDIAVLLLDGEHMVER
CVVVALAITADGTKKPVGLWDGSTENKTVVRSLLADLVARGLRFDDGLLVVLDGAKALASAVREVFGDKAAVQRCTLHKRRNVAAHLPAKDQAWVDAKLV
KAFNHPDPAQGLHNAKHLAAQLDKNHPGAAASLREGLEEMFTVARLGIDGRLAVTLTTSNPIESMLSIARTTNRNVTRWRDGQMVLRWTAAGMLNAERSF
RRVKGYKQMPQLIAALHRHAHPQTATDTKTVSAAA
RTTDGHEVPLISYTHFAADDLLTQVVMERMAAGVATRRHARVAEPVGAQVTAASKAMSKSAISRRFVRQTQTALAELMARDLSGEDIAVLLLDGEHMVER
CVVVALAITADGTKKPVGLWDGSTENKTVVRSLLADLVARGLRFDDGLLVVLDGAKALASAVREVFGDKAAVQRCTLHKRRNVAAHLPAKDQAWVDAKLV
KAFNHPDPAQGLHNAKHLAAQLDKNHPGAAASLREGLEEMFTVARLGIDGRLAVTLTTSNPIESMLSIARTTNRNVTRWRDGQMVLRWTAAGMLNAERSF
RRVKGYKQMPQLIAALHRHAHPQTATDTKTVSAAA
Blast result :
Comments
ISMyo1 is 65% aa similar to IS1295.
References
1] ISfinder annotation (2013)
2] Kim,B.-J., Lee,J.H., Lim,J.-S., Choi,I.-Y., Choi,B.-S. and Lim,J.-S. (2013) Direct submission GenBank.
2] Kim,B.-J., Lee,J.H., Lim,J.-S., Choi,I.-Y., Choi,B.-S. and Lim,J.-S. (2013) Direct submission GenBank.