ISMco5
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_015416 | ND | Methanosaeta concilii | Methanosaeta concilii GP6 |
DNA section
IS Length : 1377 bp
Ends
IR Length : 23/29
IRL : GGTAGTGTCCCGATTGTGATGTAAAATAGTAGTAATAATCCTGGCGATGT
IRR : GGTAGTGTCCCGAAATTGCTGTAATTTAGCCGCCCTGTATCCTACTATCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TACCCCCGAC | ATTATGACTA | 0 | |
ATATTATGAC | CCAGGATATG | 0 | |
GAGGATGATC | CCCAACCGGC | 0 | |
TGGCGAAGTC | GGCGAAGGTA | 0 |
DNA sequence
GGTAGTGTCCCGATTGTGATGTAAAATAGTAGTAATAATCCTGGCGATGTATTGGATGCTGCTTTGGTAGTAGCAGCATTTTTGATCATTTGCAAGAATT
ATAATAGGCCCTGTATCCATACTTGAGTTGTCTCGAAATCAAGGAGGACACAAGGCCATGCAACCATTAGAGCCAGTAATAAATTATCTTGTCGATGTCC
CGATTGAGATCGGGACTCTTTCCCCGTAGGTGAAAGATCCGAATAGCGGACTGAAGCAGGTCATAACCGAGTTCCTGAACGCGGTAATGCTGTTTGAGGC
ATATCTGCAGAGCGGTGCGCTTCCCTACGAGCGCAGCCCTCAGAGAAAGGCACACAGAAACGGCACCAGATCGAGAACCCTCAAGACCCGCGTTGGCGAA
TTAACCCTTAATAAGCCTCAGTTCAGAGAATTCCCATTTGAATCAAGCGTATTTGAAAGATACTGTCGTGTAGAACAAGCTCTGCTAATGACGATTGCAG
AATCATATATCCAGGGCGTTTCAACCCGAAAAATGGAGGAATTGGTCGAAAACTTCGGTTTGAACAGGTTATCTGCGTCTGAGGTCTCTCGTTTATGCAA
GATTCTCGACGAAAAAGTGGAGGAGTTCCTCAAGCGCCCAATTGAAGTCAAGATTCGCTATCTGCTGGTTGACGCTACCTACTTCAAGGTGAGATGCGGT
GCCCAATACAAGAACAGGGCTTTGCTGGTTGTAGTGGGGGTTCGCGAGGATGGTCTCAGAGAGATCTTGGGCGCCAGCATAGCGGAATCGGAGGACAGTG
GCTATTGGATGACACTATTCAGAAGCCTCAAGGATAGGGGATTAGAGGGCGTCGAGTTGGTGATATCAGATGCACACAAGGGCATTCAAAAAGCAGTGGA
ATTGTCTTTTGTGGGAGCCTCCTGGCAGTATTGCCGTTTTCACCATTCAAGAGCGGTCCTGGAGAGCATTCCCAACAAGGACAAACAGGAGATCGCCGAT
AAGCTAAAAGAAGCATCTGATGACGAGATAAAGATGCAAGAACTGGCGAAGGAGCTGAGAGATAGAGGTTACGATCCTGCTGCAGAGACAATCGACAGGT
TCAGATTCGATCTATGGAATTATAAGGCGTATCCGAAGGCCCATTGGAAGAGGATACGAACCACAAACATCATTGAGCGCATCAATAAGGAATTGAAGCG
CAGAAGCAGACCTGTAGGAGCATTCCCGAGTGATCAATCCCTGATGAGATTGGCAGGATGCATCATGATAAATATAAATGAAGAGTGGGTCACAGGTAAA
AAGTATTTAACGATGGACGTATAGTAATGATAGTAGGATACAGGGCGGCTAAATTACAGCAATTTCGGGACACTACC
ATAATAGGCCCTGTATCCATACTTGAGTTGTCTCGAAATCAAGGAGGACACAAGGCCATGCAACCATTAGAGCCAGTAATAAATTATCTTGTCGATGTCC
CGATTGAGATCGGGACTCTTTCCCCGTAGGTGAAAGATCCGAATAGCGGACTGAAGCAGGTCATAACCGAGTTCCTGAACGCGGTAATGCTGTTTGAGGC
ATATCTGCAGAGCGGTGCGCTTCCCTACGAGCGCAGCCCTCAGAGAAAGGCACACAGAAACGGCACCAGATCGAGAACCCTCAAGACCCGCGTTGGCGAA
TTAACCCTTAATAAGCCTCAGTTCAGAGAATTCCCATTTGAATCAAGCGTATTTGAAAGATACTGTCGTGTAGAACAAGCTCTGCTAATGACGATTGCAG
AATCATATATCCAGGGCGTTTCAACCCGAAAAATGGAGGAATTGGTCGAAAACTTCGGTTTGAACAGGTTATCTGCGTCTGAGGTCTCTCGTTTATGCAA
GATTCTCGACGAAAAAGTGGAGGAGTTCCTCAAGCGCCCAATTGAAGTCAAGATTCGCTATCTGCTGGTTGACGCTACCTACTTCAAGGTGAGATGCGGT
GCCCAATACAAGAACAGGGCTTTGCTGGTTGTAGTGGGGGTTCGCGAGGATGGTCTCAGAGAGATCTTGGGCGCCAGCATAGCGGAATCGGAGGACAGTG
GCTATTGGATGACACTATTCAGAAGCCTCAAGGATAGGGGATTAGAGGGCGTCGAGTTGGTGATATCAGATGCACACAAGGGCATTCAAAAAGCAGTGGA
ATTGTCTTTTGTGGGAGCCTCCTGGCAGTATTGCCGTTTTCACCATTCAAGAGCGGTCCTGGAGAGCATTCCCAACAAGGACAAACAGGAGATCGCCGAT
AAGCTAAAAGAAGCATCTGATGACGAGATAAAGATGCAAGAACTGGCGAAGGAGCTGAGAGATAGAGGTTACGATCCTGCTGCAGAGACAATCGACAGGT
TCAGATTCGATCTATGGAATTATAAGGCGTATCCGAAGGCCCATTGGAAGAGGATACGAACCACAAACATCATTGAGCGCATCAATAAGGAATTGAAGCG
CAGAAGCAGACCTGTAGGAGCATTCCCGAGTGATCAATCCCTGATGAGATTGGCAGGATGCATCATGATAAATATAAATGAAGAGTGGGTCACAGGTAAA
AAGTATTTAACGATGGACGTATAGTAATGATAGTAGGATACAGGGCGGCTAAATTACAGCAATTTCGGGACACTACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1095 bp | 364 aa | 230 | 1324 | + | No |
Chemistry : DDE
ORF sequence :
MKDPNSGLKQVITEFLNAVMLFEAYLQSGALPYERSPQRKAHRNGTRSRTLKTRVGELTLNKPQFREFPFESSVFERYCRVEQALLMTIAESYIQGVSTR
KMEELVENFGLNRLSASEVSRLCKILDEKVEEFLKRPIEVKIRYLLVDATYFKVRCGAQYKNRALLVVVGVREDGLREILGASIAESEDSGYWMTLFRSL
KDRGLEGVELVISDAHKGIQKAVELSFVGASWQYCRFHHSRAVLESIPNKDKQEIADKLKEASDDEIKMQELAKELRDRGYDPAAETIDRFRFDLWNYKA
YPKAHWKRIRTTNIIERINKELKRRSRPVGAFPSDQSLMRLAGCIMININEEWVTGKKYLTMDV
KMEELVENFGLNRLSASEVSRLCKILDEKVEEFLKRPIEVKIRYLLVDATYFKVRCGAQYKNRALLVVVGVREDGLREILGASIAESEDSGYWMTLFRSL
KDRGLEGVELVISDAHKGIQKAVELSFVGASWQYCRFHHSRAVLESIPNKDKQEIADKLKEASDDEIKMQELAKELRDRGYDPAAETIDRFRFDLWNYKA
YPKAHWKRIRTTNIIERINKELKRRSRPVGAFPSDQSLMRLAGCIMININEEWVTGKKYLTMDV
Blast result :
Comments
ISMco5 is 78% aa similar to ISMco4.
References
1] ISfinder annotation (2013)
2] Barber,R.D., Zhang,L., Harnack,M., Olson,M.V., Kaul,R., Ingram-Smith,C. and Smith,K.S. (2011) J. Bacteriol. 193 (14), 3668-3669.
2] Barber,R.D., Zhang,L., Harnack,M., Olson,M.V., Kaul,R., Ingram-Smith,C. and Smith,K.S. (2011) J. Bacteriol. 193 (14), 3668-3669.