ISMye1

  • Family IS256
  • Group ISC1250
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_JH597761 ND Metallosphaera yellowstonensis
Metallosphaera yellowstonensis MK1
DNA section
IS Length : 1198 bp

Ends


IR Length : 25/30

IRL : GGGCGATTCAGGTCTCCATTGCGATTTCTATTTGTTTCTATAGAATGAAA
IRR : GGGTGATTCAGGGCTCCTTTGCAAATTGTAATATATCTCTCGGTTTAGAC

Insertion site


Left flankDirect repeatRight flankDR Length
CAAAGACTTAAATCTCTTCC0
GGAATTCTCTGTTATGGGAC0
ATTCTTATGATGGCTTTTTCATCTCTA7

DNA sequence

GGGCGATTCAGGTCTCCATTGCGATTTCTATTTGTTTCTATAGAATGAAAGTGACTTAATTGATCCTACATCAGTAACACTAAAAAGGGGACGAGCGCTA
GGTCATACCATGAGACACCCATTTTATCACGTGGTGACCTCGCTCGTCCCCGAGTTACTTGGGAAGGACGCGCTATTAAATGAAACGGTGGCTGAGATCG
AGAGGAGGGCCCTGGAGGAGGCGGAGAGGACCTCCCCCAGGTACGTCAGGGGGAAGGAGGTGAGGAGGAGGGGTTACGCCAGGTACAGGTTCTTGAAGGG
GTTCAGGGTCTCCCTCCGGGGGAGGAGGGTAGTGTACGGGCTGGAGTGGGTCACGGTGAGGTTGCCCGTGCTGTACAGGGGAGGGGAGAGGGTGAGGACG
AGGGTGGAGGAGGAGCTGCTCAGGGAGGAGGGGCTGGTGCTCAGGGCCCTCCTCCTGCTCTACTCCGTGTTGGGAGGGAAGTTGAACGCCAAGCTCTGGA
CCCAGGAGCTGGAGGTGAGGGGGGACTTCAAGTACGTGGTCGTGGACGGGAAGTACGTGAAGTTGAGGGGAGGGAGGAGGGGGGTCCTCTTAATCGCGTT
GGGACTCACTGACCACGGTGTGAGGGCCGTGCTTGACGTGGTCCTGACCGGGGAGGAGGACGTCGTGAGCTACTGGGACCTCCTGGTGAGGCTGTGGAGG
AGGTACAACCTCACCCTGGTCGTAGCCGACGGGGTGAAGGCCCTAGACACGGCCATCTCCCGCTCCGGGATCAAGGTCGCGAGGCAGACCTGCCCGGTCC
ACCTCAAACGGAGGGTGGACAGGGGGGTTAGGGTTTTGCTGGACCTCCTCCTCTCCCTCGCCGAGTCCGTCCCCACCCGTGGCTCTCCCCTCCTCTCCTA
CCTCCTCGCCCCCAGGGAGCTCTGGCCCCTCCTCAGGTCAAACAACCTGGCCGAGTCCTTCAACTCCCTCCTGGAGAGGAGGAGGTTCGGGAAGTGCCAC
TCCCCCTGGAGGATACTCCAGATCGCCCGGGCCATAGCCGTCAACTACAACCTCTCGACCTGTTATCTCATCATTGTAATAATATTACAAGAACCCTTAT
TTCTTCGTGATATGATCAAATATATTCAGTAATTCCTTCATTGAATAAGTCTAAACCGAGAGATATATTACAATTTGCAAAGGAGCCCTGAATCACCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1023 bp340 aa1101132+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRSLSNHVVTSLVPELLGKDALLNETVAEIERRALEEAERTSPRYARGKEVRRRGYARYRFLKGFRVSLLGRRVVYGLEWVTVRLPVLYRGGERVRTRVE
EELLREEGVVLRALLLLYSVLGGKLNAKLWTQELEVRGDFKYVVVDGKYVKLRGGRRGVLLIALGLTDHGVRAVLDVVLTGEEDVVSYWDLLVRLWRRYN
LTLVVADGVKALDEAISRSGIKVARQTCLVHLKRRVDRRVRVLLDLLLSLAESVPTRGSPLLSYLLAPRELWPLLRSNNLAESFNSLLERRRFGKCHSPW
RILQIARAIALNYNLSTCYLIIVIILQEPLFLRDMIKYIQ

 

Blast result :
Comments
ISMye1 is 76% aa similar to ISC1250.
References
1] ISfinder annotation (2013)
2] Lucas,S., Han,J., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Kozubal,M., Macur,R.E., Jay,Z., Inskeep,W. and Woyke,T.(2012) Direct submission GenBank.