ISMye1
- Family IS256
- Group ISC1250
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_JH597761 | ND | Metallosphaera yellowstonensis | Metallosphaera yellowstonensis MK1 |
DNA section
IS Length : 1198 bp
Ends
IR Length : 25/30
IRL : GGGCGATTCAGGTCTCCATTGCGATTTCTATTTGTTTCTATAGAATGAAA
IRR : GGGTGATTCAGGGCTCCTTTGCAAATTGTAATATATCTCTCGGTTTAGAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CAAAGACTTA | AATCTCTTCC | 0 | |
GGAATTCTCT | GTTATGGGAC | 0 | |
ATTCTTATGA | TGGCTTT | TTCATCTCTA | 7 |
DNA sequence
GGGCGATTCAGGTCTCCATTGCGATTTCTATTTGTTTCTATAGAATGAAAGTGACTTAATTGATCCTACATCAGTAACACTAAAAAGGGGACGAGCGCTA
GGTCATACCATGAGACACCCATTTTATCACGTGGTGACCTCGCTCGTCCCCGAGTTACTTGGGAAGGACGCGCTATTAAATGAAACGGTGGCTGAGATCG
AGAGGAGGGCCCTGGAGGAGGCGGAGAGGACCTCCCCCAGGTACGTCAGGGGGAAGGAGGTGAGGAGGAGGGGTTACGCCAGGTACAGGTTCTTGAAGGG
GTTCAGGGTCTCCCTCCGGGGGAGGAGGGTAGTGTACGGGCTGGAGTGGGTCACGGTGAGGTTGCCCGTGCTGTACAGGGGAGGGGAGAGGGTGAGGACG
AGGGTGGAGGAGGAGCTGCTCAGGGAGGAGGGGCTGGTGCTCAGGGCCCTCCTCCTGCTCTACTCCGTGTTGGGAGGGAAGTTGAACGCCAAGCTCTGGA
CCCAGGAGCTGGAGGTGAGGGGGGACTTCAAGTACGTGGTCGTGGACGGGAAGTACGTGAAGTTGAGGGGAGGGAGGAGGGGGGTCCTCTTAATCGCGTT
GGGACTCACTGACCACGGTGTGAGGGCCGTGCTTGACGTGGTCCTGACCGGGGAGGAGGACGTCGTGAGCTACTGGGACCTCCTGGTGAGGCTGTGGAGG
AGGTACAACCTCACCCTGGTCGTAGCCGACGGGGTGAAGGCCCTAGACACGGCCATCTCCCGCTCCGGGATCAAGGTCGCGAGGCAGACCTGCCCGGTCC
ACCTCAAACGGAGGGTGGACAGGGGGGTTAGGGTTTTGCTGGACCTCCTCCTCTCCCTCGCCGAGTCCGTCCCCACCCGTGGCTCTCCCCTCCTCTCCTA
CCTCCTCGCCCCCAGGGAGCTCTGGCCCCTCCTCAGGTCAAACAACCTGGCCGAGTCCTTCAACTCCCTCCTGGAGAGGAGGAGGTTCGGGAAGTGCCAC
TCCCCCTGGAGGATACTCCAGATCGCCCGGGCCATAGCCGTCAACTACAACCTCTCGACCTGTTATCTCATCATTGTAATAATATTACAAGAACCCTTAT
TTCTTCGTGATATGATCAAATATATTCAGTAATTCCTTCATTGAATAAGTCTAAACCGAGAGATATATTACAATTTGCAAAGGAGCCCTGAATCACCC
GGTCATACCATGAGACACCCATTTTATCACGTGGTGACCTCGCTCGTCCCCGAGTTACTTGGGAAGGACGCGCTATTAAATGAAACGGTGGCTGAGATCG
AGAGGAGGGCCCTGGAGGAGGCGGAGAGGACCTCCCCCAGGTACGTCAGGGGGAAGGAGGTGAGGAGGAGGGGTTACGCCAGGTACAGGTTCTTGAAGGG
GTTCAGGGTCTCCCTCCGGGGGAGGAGGGTAGTGTACGGGCTGGAGTGGGTCACGGTGAGGTTGCCCGTGCTGTACAGGGGAGGGGAGAGGGTGAGGACG
AGGGTGGAGGAGGAGCTGCTCAGGGAGGAGGGGCTGGTGCTCAGGGCCCTCCTCCTGCTCTACTCCGTGTTGGGAGGGAAGTTGAACGCCAAGCTCTGGA
CCCAGGAGCTGGAGGTGAGGGGGGACTTCAAGTACGTGGTCGTGGACGGGAAGTACGTGAAGTTGAGGGGAGGGAGGAGGGGGGTCCTCTTAATCGCGTT
GGGACTCACTGACCACGGTGTGAGGGCCGTGCTTGACGTGGTCCTGACCGGGGAGGAGGACGTCGTGAGCTACTGGGACCTCCTGGTGAGGCTGTGGAGG
AGGTACAACCTCACCCTGGTCGTAGCCGACGGGGTGAAGGCCCTAGACACGGCCATCTCCCGCTCCGGGATCAAGGTCGCGAGGCAGACCTGCCCGGTCC
ACCTCAAACGGAGGGTGGACAGGGGGGTTAGGGTTTTGCTGGACCTCCTCCTCTCCCTCGCCGAGTCCGTCCCCACCCGTGGCTCTCCCCTCCTCTCCTA
CCTCCTCGCCCCCAGGGAGCTCTGGCCCCTCCTCAGGTCAAACAACCTGGCCGAGTCCTTCAACTCCCTCCTGGAGAGGAGGAGGTTCGGGAAGTGCCAC
TCCCCCTGGAGGATACTCCAGATCGCCCGGGCCATAGCCGTCAACTACAACCTCTCGACCTGTTATCTCATCATTGTAATAATATTACAAGAACCCTTAT
TTCTTCGTGATATGATCAAATATATTCAGTAATTCCTTCATTGAATAAGTCTAAACCGAGAGATATATTACAATTTGCAAAGGAGCCCTGAATCACCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1023 bp | 340 aa | 110 | 1132 | + | No |
Chemistry : DDE
ORF sequence :
MRSLSNHVVTSLVPELLGKDALLNETVAEIERRALEEAERTSPRYARGKEVRRRGYARYRFLKGFRVSLLGRRVVYGLEWVTVRLPVLYRGGERVRTRVE
EELLREEGVVLRALLLLYSVLGGKLNAKLWTQELEVRGDFKYVVVDGKYVKLRGGRRGVLLIALGLTDHGVRAVLDVVLTGEEDVVSYWDLLVRLWRRYN
LTLVVADGVKALDEAISRSGIKVARQTCLVHLKRRVDRRVRVLLDLLLSLAESVPTRGSPLLSYLLAPRELWPLLRSNNLAESFNSLLERRRFGKCHSPW
RILQIARAIALNYNLSTCYLIIVIILQEPLFLRDMIKYIQ
EELLREEGVVLRALLLLYSVLGGKLNAKLWTQELEVRGDFKYVVVDGKYVKLRGGRRGVLLIALGLTDHGVRAVLDVVLTGEEDVVSYWDLLVRLWRRYN
LTLVVADGVKALDEAISRSGIKVARQTCLVHLKRRVDRRVRVLLDLLLSLAESVPTRGSPLLSYLLAPRELWPLLRSNNLAESFNSLLERRRFGKCHSPW
RILQIARAIALNYNLSTCYLIIVIILQEPLFLRDMIKYIQ
Blast result :
Comments
ISMye1 is 76% aa similar to ISC1250.
References
1] ISfinder annotation (2013)
2] Lucas,S., Han,J., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Kozubal,M., Macur,R.E., Jay,Z., Inskeep,W. and Woyke,T.(2012) Direct submission GenBank.
2] Lucas,S., Han,J., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Kozubal,M., Macur,R.E., Jay,Z., Inskeep,W. and Woyke,T.(2012) Direct submission GenBank.