ISMta1
- Family ISH6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AGIY01000010 | ND | Methanolinea tarda | Methanolinea tarda NOBI-1 |
DNA section
IS Length : 1588 bp
Ends
IR Length : 20/25
IRL : GATCGTGTCCAAAAATCGGCTAAGATAATCCCTGATGGGATGATCTCACT
IRR : GGTTGTGTCACAAGATCGGCTAAGAACTCACCAGCAACAAAAGATCTGAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATAACTGTGC | AAACTTTT | TGATTCGTGG | 8 |
DNA sequence
GATCGTGTCCAAAAATCGGCTAAGATAATCCCTGATGGGATGATCTCACTGGTGACAAACCAAAAGGAGATCACCCCAGATGGATATCGTGCACGCAATT
GAAGTAAAGATATGCATTTCTGAAGGCGGCCAGCCGATACCGATCGAGAGTCTTGTAGCGTCGGTGAAGAACCTTCAAATCGAAGCCAGGCTACTTGAAC
GTATACTCGAGGCAATGAACGAATATCTCGTCAATTCCTATTGTGGCGAGAGATATTCAAGACGTACTCGCGAAGAGCGATATATTCGTGCAGGGACATC
GGAGAAGACGATTGTGACATCGGTGGGATCCATAACCCTGAAGCTGAATAAGGTCCGGGATATCCAGGAGAACCGTATCTGGAAACCCCTGACAGACATT
GTACGGTTTGCAGGAAAACAGGTGTATCAACCCGATATCTCCATGATCAGCATAGATTTTGTTCAGAAGCTCAGTTACCGCGATACTACGGAAGAGTTAG
GGATCGTACTTCCCGAAGTGCCCTCGCGGATGACCATACATAACCGTATAAAGCAAATGAGCGGATTGTTAGAGGTGAACGAGATCGAGATCCCCATGGT
GGTGGCAATGGCAGATGGAACCAAGACCCACTCACAGGAACCGGGTAAGAAACAGAATGATATCCATGTCGTTCTCGGTGTGAGCGATGTGAGGAAAGTG
CTGCTCGGTGTCACGGTGAATCAATCCTGGAAATTCCTGTCAGATCTTGTTGACAATGAGAAGACACTCGCCGAGAATGCAGTCATCGTCAGTGATGGAG
AACCTGAACTGAGGGCAGCATTTGCAGATGAAGATATTCAGTTCCAGACTGACCTGATCCATGGGTTCCGGTTATTAGGATATAAGTTATGGGAAGATGG
CAAATTGAGTCTGAAAGAGAGAAAGGGAGTAATTACTGAGCTGAAAAAGTTACTACTCTCGCTGAAAAATGTTGTTATTTTTCATAAATCTGATCATCAA
CGAGTCGGTGAGAAAATTAACCAGGTCGTTGAGAGTATGGAAAATCTGGCTAACCGATTGTTCGAGAAAGGGTGTTCTCGAGCTGCTGCTTTTCTCAATA
CCTATTCGAATACCCTTGTGACATTTGCCCGATTGTCCCTGAATGGTATTCACGTTCCCTGGAACTCAAATATGATCGAACGGTTGATGGGTGAGATATC
AAAACGAGTAAAACACAAATGGATGCGATGGACCACTCAGGGACTCGAAGCTATACTGAGGTTTATTCTCGTGCGCTATACCAGTCCCTGGTTGTATCGA
CGATTTCGTCATGAATACCTGGGACTCCATGGTCTTTCATCAATTGCAATTCAAATCTCGATTGATTCACGTGCTTCCTAGATCTTGGATCCCATTTTGA
GTAAGTTGGGCAGGATAGAGTGGGGACTTCGCCCCACACCCCGATTACGATAGACGCCGCCGCCCCCGACGGGGCACCCCCGCGGCGGTCCTAATGGTTC
TCTTTTCTGATGACCGAAATACTTGTTAGCTGAGATAACTCAGATCTTTTGTTGCTGGTGAGTTCTTAGCCGATCTTGTGACACAACC
GAAGTAAAGATATGCATTTCTGAAGGCGGCCAGCCGATACCGATCGAGAGTCTTGTAGCGTCGGTGAAGAACCTTCAAATCGAAGCCAGGCTACTTGAAC
GTATACTCGAGGCAATGAACGAATATCTCGTCAATTCCTATTGTGGCGAGAGATATTCAAGACGTACTCGCGAAGAGCGATATATTCGTGCAGGGACATC
GGAGAAGACGATTGTGACATCGGTGGGATCCATAACCCTGAAGCTGAATAAGGTCCGGGATATCCAGGAGAACCGTATCTGGAAACCCCTGACAGACATT
GTACGGTTTGCAGGAAAACAGGTGTATCAACCCGATATCTCCATGATCAGCATAGATTTTGTTCAGAAGCTCAGTTACCGCGATACTACGGAAGAGTTAG
GGATCGTACTTCCCGAAGTGCCCTCGCGGATGACCATACATAACCGTATAAAGCAAATGAGCGGATTGTTAGAGGTGAACGAGATCGAGATCCCCATGGT
GGTGGCAATGGCAGATGGAACCAAGACCCACTCACAGGAACCGGGTAAGAAACAGAATGATATCCATGTCGTTCTCGGTGTGAGCGATGTGAGGAAAGTG
CTGCTCGGTGTCACGGTGAATCAATCCTGGAAATTCCTGTCAGATCTTGTTGACAATGAGAAGACACTCGCCGAGAATGCAGTCATCGTCAGTGATGGAG
AACCTGAACTGAGGGCAGCATTTGCAGATGAAGATATTCAGTTCCAGACTGACCTGATCCATGGGTTCCGGTTATTAGGATATAAGTTATGGGAAGATGG
CAAATTGAGTCTGAAAGAGAGAAAGGGAGTAATTACTGAGCTGAAAAAGTTACTACTCTCGCTGAAAAATGTTGTTATTTTTCATAAATCTGATCATCAA
CGAGTCGGTGAGAAAATTAACCAGGTCGTTGAGAGTATGGAAAATCTGGCTAACCGATTGTTCGAGAAAGGGTGTTCTCGAGCTGCTGCTTTTCTCAATA
CCTATTCGAATACCCTTGTGACATTTGCCCGATTGTCCCTGAATGGTATTCACGTTCCCTGGAACTCAAATATGATCGAACGGTTGATGGGTGAGATATC
AAAACGAGTAAAACACAAATGGATGCGATGGACCACTCAGGGACTCGAAGCTATACTGAGGTTTATTCTCGTGCGCTATACCAGTCCCTGGTTGTATCGA
CGATTTCGTCATGAATACCTGGGACTCCATGGTCTTTCATCAATTGCAATTCAAATCTCGATTGATTCACGTGCTTCCTAGATCTTGGATCCCATTTTGA
GTAAGTTGGGCAGGATAGAGTGGGGACTTCGCCCCACACCCCGATTACGATAGACGCCGCCGCCCCCGACGGGGCACCCCCGCGGCGGTCCTAATGGTTC
TCTTTTCTGATGACCGAAATACTTGTTAGCTGAGATAACTCAGATCTTTTGTTGCTGGTGAGTTCTTAGCCGATCTTGTGACACAACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1302 bp | 433 aa | 80 | 1381 | + | No |
Chemistry : DDE
ORF sequence :
MDIVHAIEVKICISEGGQPIPIESLVASVKNLQIEARLLERILEAMNEYLVNSYCGERYSRRTREERYIRAGTSEKTIVTSVGSITLKLNKVRDIQENRI
WKPLTDIVRFAGKQVYQPDISMISIDFVQKLSYRDTTEELGIVLPEVPSRMTIHNRIKQMSGLLEVNEIEIPMVVAMADGTKTHSQEPGKKQNDIHVVLG
VSDVRKVLLGVTVNQSWKFLSDLVDNEKTLAENAVIVSDGEPELRAAFADEDIQFQTDLIHGFRLLGYKLWEDGKLSLKERKGVITELKKLLLSLKNVVI
FHKSDHQRVGEKINQVVESMENLANRLFEKGCSRAAAFLNTYSNTLVTFARLSLNGIHVPWNSNMIERLMGEISKRVKHKWMRWTTQGLEAILRFILVRY
TSPWLYRRFRHEYLGLHGLSSIAIQISIDSRAS
WKPLTDIVRFAGKQVYQPDISMISIDFVQKLSYRDTTEELGIVLPEVPSRMTIHNRIKQMSGLLEVNEIEIPMVVAMADGTKTHSQEPGKKQNDIHVVLG
VSDVRKVLLGVTVNQSWKFLSDLVDNEKTLAENAVIVSDGEPELRAAFADEDIQFQTDLIHGFRLLGYKLWEDGKLSLKERKGVITELKKLLLSLKNVVI
FHKSDHQRVGEKINQVVESMENLANRLFEKGCSRAAAFLNTYSNTLVTFARLSLNGIHVPWNSNMIERLMGEISKRVKHKWMRWTTQGLEAILRFILVRY
TSPWLYRRFRHEYLGLHGLSSIAIQISIDSRAS
Blast result :
Comments
ISMta1 is 57% aa similar to ISHma5.
References
1] ISfinder annotation (2013)
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Land,M.L., Hauser,L., Imachi,H., Sekiguchi,Y., Kamagata,Y., Cadillo-Quiroz,H., Zinder,S., Liu,W.T., Tamaki,H. and Woyke,T.J. (2011) Direct submission GenBank.
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Land,M.L., Hauser,L., Imachi,H., Sekiguchi,Y., Kamagata,Y., Cadillo-Quiroz,H., Zinder,S., Liu,W.T., Tamaki,H. and Woyke,T.J. (2011) Direct submission GenBank.