ISMco4

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_015416 ND Methanosaeta concilii
Methanosaeta concilii GP6
DNA section
IS Length : 1334 bp

Ends


IR Length : 20/24

IRL : GGTAGCGTATCATTTTTGCTGTAAAATTTGCAGAAATATCAGTAACAAGA
IRR : GGTAGCGTGCCATATCTGCTGTAATTTCACAGTGGCCCTGTATCCTGATT

Insertion site


Left flankDirect repeatRight flankDR Length
ATATGCCTAATATTAGAGTTACATCTTG8
AAATCGTTCAGGAATCGTGGAATTGATA8
GCTCCGGTGCTTCGCTTTTAACCTGGAT8
TCATCAATCCTGAATTAGTATTATGCCC8
GGCGTGTTCCTTCAACATAGCGGAGGCT8

DNA sequence

GGTAGCGTATCATTTTTGCTGTAAAATTTGCAGAAATATCAGTAACAAGAACTGACTTGCTCTTCACGAGATAACAGCAAGTTATTTCTTCATGAGATAT
TATAATTGGCCCTGTATCCCCAAGTCGTCGAAACTTTGGGAGGGACACAGAGCCATGAATATATCCGACATAGCAGATGATTATCTTATCGATCGAAAAG
AGGGCATGAAGAAGCTGACCGCGGGTTTTCTGAATGAGGTAATGCAGCTTGAGGCTGAAAATCAAATCCAGGCCCGTCCCTATGAACGGACTGGCAAGAG
ACGAGCACACCGCAACGGAACGAGATCGCGAAAACTAAAGACCATCTACGGCGAGATAGAGCTTGATAAACCTCAAATCCGAGAATTCCCATTCGAAACC
GCAGTATTCGAGAGATTTTCTCGTGTGGAAGACTCATTAAGAGTTGCTGTAGCAGAATCTTATTTTGAGGGAGTATCAACCAGAAAAGTCGAGAAAGTAT
TCTCGAAGTTTGGATTAAAGAACATATCTGCATCTGAAGTCTCAAGAATTGCTAAAAAGCTGGATAAATTGGTCAAAGATTTCTTGAACAGGCCCATCGA
AGGATCAATCCCCTACATATTCGTGGATGCAAGCTACTTCAAGGTCCGAACAGATGGCAGATACGTAAATAAGGCATTGCTCGTTGTCGTTGCCATTCAT
GATGATGGATATCGCGAGATCCTCAGTGCCACGGTGGATGATAGCGAAGATGAATCCTGTTGGGAAAACTGTTTTGAAAGCTTGAAGGCTCGAGGACTTA
AAGGAGTCAAATTGGTGATATCTGATGCGCATAAAGGGATACAAGCAGCCGTCCAGAAGTCATTTCTTGGAGCATCTTGGCAAATGTGTAATGTTCACTT
TATGCGTGCTGTGCTCAAGAACATACCTAAGAAAGAGAAAAAGGAGGTCGCCTACATGCTGAAGGATGCTATTGAAGATGAGTTCAAGATGCAGGAGCTG
GCTGTCATTCTTGATGATAAAGGATTCAAAAAGTCGGCGGATACGATTGATAGCTTCCGATTTGACCTTTGGAACTATAAATCGTTTCCCAGATCGCACT
GGAAAAGGATCCGAACAACTAACGTCCTGGAGAGAATCAACAAGGAGCTGAAACGAAGAAGTCGTGTGGCTGGAGCCTATTCAAATGATCAGTCGCTTCT
GAGGGTGGCGGTTTGCATCATGATGGACATTAACGAGGATTGGATAACAGGTAAAAGGTATTTATCATTGGAAGAGTAGAGTGGAATCAGGATACAGGGC
CACTGTGAAATTACAGCAGATATGGCACGCTACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1125 bp374 aa1551279+No
ORF function : Transposase
Description :

ORF sequence :

MNISDIADDYLIDRKEGMKKLTAGFLNEVMQLEAENQIQARPYERTGKRRAHRNGTRSRKLKTIYGEIELDKPQIREFPFETAVFERFSRVEDSLRVAVA
ESYFEGVSTRKVEKVFSKFGLKNISASEVSRIAKKLDKLVKDFLNRPIEGSIPYIFVDASYFKVRTDGRYVNKALLVVVAIHDDGYREILSATVDDSEDE
SCWENCFESLKARGLKGVKLVISDAHKGIQAAVQKSFLGASWQMCNVHFMRAVLKNIPKKEKKEVAYMLKDAIEDEFKMQELAVILDDKGFKKSADTIDS
FRFDLWNYKSFPRSHWKRIRTTNVLERINKELKRRSRVAGAYSNDQSLLRVAVCIMMDINEDWITGKRYLSLEE

 

Blast result :
Comments
ISMco4 is 75% aa similar to ISKol15.
References
1] Romain Guérillot and Philippe Glaser (2013) Direct submission.
2] Barber,R.D., Zhang,L., Harnack,M., Olson,M.V., Kaul,R., Ingram-Smith,C. and Smith,K.S. (2011) J. Bacteriol. 193 (14), 3668-3669.