ISMva4
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008726 | ND | Mycobacterium vanbaalenii | Mycobacterium vanbaalenii PYR-1 |
DNA section
IS Length : 1459 bp
Ends
IR Length : 20/27
IRL : GGGGTGTCAGATGGTCTGTGTAAGTCCTGACGGAAGGATCTCAGGACATG
IRR : GAGCGTGTCAAGTTTTTTGTGTAAGTCGGTTGTGTGATTTTCCTGGTGGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCTGCAACAA | CATGCCCA | GCCCTTTCGGG | 8 |
ATGCCCAGCC | CTTTCGGG | CAAAATCCGCG | 8 |
DNA sequence
GGGGTGTCAGATGGTCTGTGTAAGTCCTGACGGAAGGATCTCAGGACATGGTGACAGGCAAGGACGAGGATTTGCAGCTGGGTGAGGTGGTTTCCACCGT
GGAGATGGCCGAGGCGCTTCGGGCTTCGGGTGCGGTGGACGATTTGCTGGCTCAGATCGATTCCGGCGAGGTGGCGCTGACCGGTGAGGGTGGCCTGCTG
CCCGGGCTGATCAAGCTCGCTCTCGAGCGGGGCCTGGCCGCGGAGTTGACCGATCATCTGGGTTATGAGAAGGGCGACCCGGCTGGTCGGGCGCTGCCCA
ATGCCCGCAACGGCAGCTCAGCCAAGACGGTGCAGACCGAGGCCGGCCCGGTCCCGTTGGATGTCCCGCGTGATCGTGACGGCTCGTTCACGCCGCGGCT
GGTGCCCAAGGGGCAGCGCCGCATCGGCGGGCTCGACGACATGATCATCTCGCTGTATGCCGGTGGAATGACGTTGCGCGACATCCAATTTCACCTTGCT
TCCACGATCGGAACCGACGTTTCGCATGAGACGATCTCCAAGATCGTCGACGAGATCTCCGAGGAGGTGTTGGTCTGGCAGCGCCGGCCGCTGGACCCGA
TCTACCCGGTGATCTACCTCGACGCGATCGTGGTCAAGGTCAAAGACGGCGGCCACACCCGCAACAAGGCCGCTCACATCGCCGTGGGCGTCGATATGGC
CGGAATCAAGCACGTCCTGGGCATCTGGGTCCAGCAGAACGAAGGAGCGGCGTTTTGGGCCTCGGTGTGTGCCGACCTGTCCAACCGCGGTATCCGCGAC
GTGCTGATCGTGTGCTGCGATGGGCTCACCGGCTTCCCCGAAGCGATCGCAGCGACCTGGTCGCAAGCAGCGGTTCAGACCTGTGTGGTGCACCTGATTC
GCAACGCGTTGCGGTTCGTGTCCTACAGCGACCGCAAGACGGTGGCTGCAGCACTGAAACCGATCTACACCGCACCCAACGCCGAGGCCGCCCGCGCCGA
GCTCGACGCGTTCACCGCATCGGAACTGGGTAAGAAAAATCCCACGGTGACACGGGTTTTCGAGCGGGCATGGGAGCAGTTCATTCCGTTCCTGGCGTTC
CCGCCCGAGCTGCGCCGGGTGATCTACACCACGAACTCGATCGAATCGCTGAACTACCAGCTGCGAAAGGTCACCAAGACCCGCGGCCAGTTCCCCAACG
ACGCCGCCGCGGTGAAACTGCTCTGGCTGGCCATCTGCAACATCGAGGACAAACGCGCCGCTGAACGCGCCAAAGAACGCAAACAGAAACGTTGCCGAAC
AGCCCCCGGACGACTTGTGGAAGGACAGGTCGTCACCAACTGGAAGAAAGCCCTCGAACAACTCGTTCTGGTCTACCCGGACCGCATCGAGCCGTATCTG
TAACGACAACCACCAGGAAAATCACACAACCGACTTACACAAAAAACTTGACACGCTC
GGAGATGGCCGAGGCGCTTCGGGCTTCGGGTGCGGTGGACGATTTGCTGGCTCAGATCGATTCCGGCGAGGTGGCGCTGACCGGTGAGGGTGGCCTGCTG
CCCGGGCTGATCAAGCTCGCTCTCGAGCGGGGCCTGGCCGCGGAGTTGACCGATCATCTGGGTTATGAGAAGGGCGACCCGGCTGGTCGGGCGCTGCCCA
ATGCCCGCAACGGCAGCTCAGCCAAGACGGTGCAGACCGAGGCCGGCCCGGTCCCGTTGGATGTCCCGCGTGATCGTGACGGCTCGTTCACGCCGCGGCT
GGTGCCCAAGGGGCAGCGCCGCATCGGCGGGCTCGACGACATGATCATCTCGCTGTATGCCGGTGGAATGACGTTGCGCGACATCCAATTTCACCTTGCT
TCCACGATCGGAACCGACGTTTCGCATGAGACGATCTCCAAGATCGTCGACGAGATCTCCGAGGAGGTGTTGGTCTGGCAGCGCCGGCCGCTGGACCCGA
TCTACCCGGTGATCTACCTCGACGCGATCGTGGTCAAGGTCAAAGACGGCGGCCACACCCGCAACAAGGCCGCTCACATCGCCGTGGGCGTCGATATGGC
CGGAATCAAGCACGTCCTGGGCATCTGGGTCCAGCAGAACGAAGGAGCGGCGTTTTGGGCCTCGGTGTGTGCCGACCTGTCCAACCGCGGTATCCGCGAC
GTGCTGATCGTGTGCTGCGATGGGCTCACCGGCTTCCCCGAAGCGATCGCAGCGACCTGGTCGCAAGCAGCGGTTCAGACCTGTGTGGTGCACCTGATTC
GCAACGCGTTGCGGTTCGTGTCCTACAGCGACCGCAAGACGGTGGCTGCAGCACTGAAACCGATCTACACCGCACCCAACGCCGAGGCCGCCCGCGCCGA
GCTCGACGCGTTCACCGCATCGGAACTGGGTAAGAAAAATCCCACGGTGACACGGGTTTTCGAGCGGGCATGGGAGCAGTTCATTCCGTTCCTGGCGTTC
CCGCCCGAGCTGCGCCGGGTGATCTACACCACGAACTCGATCGAATCGCTGAACTACCAGCTGCGAAAGGTCACCAAGACCCGCGGCCAGTTCCCCAACG
ACGCCGCCGCGGTGAAACTGCTCTGGCTGGCCATCTGCAACATCGAGGACAAACGCGCCGCTGAACGCGCCAAAGAACGCAAACAGAAACGTTGCCGAAC
AGCCCCCGGACGACTTGTGGAAGGACAGGTCGTCACCAACTGGAAGAAAGCCCTCGAACAACTCGTTCTGGTCTACCCGGACCGCATCGAGCCGTATCTG
TAACGACAACCACCAGGAAAATCACACAACCGACTTACACAAAAAACTTGACACGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1356 bp | 451 aa | 49 | 1404 | + | No |
Chemistry : DDE
ORF sequence :
MVTGKDEDLQLGEVVSTVEMAEALRASGAVDDLLAQIDSGEVALTGEGGLLPGLIKLALERGLAAELTDHLGYEKGDPAGRALPNARNGSSAKTVQTEAG
PVPLDVPRDRDGSFTPRLVPKGQRRIGGLDDMIISLYAGGMTLRDIQFHLASTIGTDVSHETISKIVDEISEEVLVWQRRPLDPIYPVIYLDAIVVKVKD
GGHTRNKAAHIAVGVDMAGIKHVLGIWVQQNEGAAFWASVCADLSNRGIRDVLIVCCDGLTGFPEAIAATWSQAAVQTCVVHLIRNALRFVSYSDRKTVA
AALKPIYTAPNAEAARAELDAFTASELGKKNPTVTRVFERAWEQFIPFLAFPPELRRVIYTTNSIESLNYQLRKVTKTRGQFPNDAAAVKLLWLAICNIE
DKRAAERAKERKQKRCRTAPGRLVEGQVVTNWKKALEQLVLVYPDRIEPYL
PVPLDVPRDRDGSFTPRLVPKGQRRIGGLDDMIISLYAGGMTLRDIQFHLASTIGTDVSHETISKIVDEISEEVLVWQRRPLDPIYPVIYLDAIVVKVKD
GGHTRNKAAHIAVGVDMAGIKHVLGIWVQQNEGAAFWASVCADLSNRGIRDVLIVCCDGLTGFPEAIAATWSQAAVQTCVVHLIRNALRFVSYSDRKTVA
AALKPIYTAPNAEAARAELDAFTASELGKKNPTVTRVFERAWEQFIPFLAFPPELRRVIYTTNSIESLNYQLRKVTKTRGQFPNDAAAVKLLWLAICNIE
DKRAAERAKERKQKRCRTAPGRLVEGQVVTNWKKALEQLVLVYPDRIEPYL
Blast result :
Comments
ISMva4 is 93% aa similar to ISMgi5.
References
1] Romain Guérillot and Philippe Glaser (2013) Direct submission.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Singan,V., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Anderson,I.J., Miller,C. and Richardson,P. (2006) Direct submission GanBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Singan,V., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Anderson,I.J., Miller,C. and Richardson,P. (2006) Direct submission GanBank.