ISMysp7
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_017904 | ND | Mycobacterium sp. | Mycobacterium sp. MOTT36Y |
DNA section
IS Length : 1397 bp
Ends
IR Length : 23/30
IRL : GGGCGTGTCTTATTGACTGTGTAAGGGGTTCGGCCTGAATGGTGGTGGCT
IRR : GGGCTTGTCAAGATAACTGTGTAAGGTGTTGCAGCCGTTTATCTTTGGGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CACCGAGTTGGCCAACCTGG | CAACCTCTGGTGCTGGTCTG | 0 | |
CTGCGCCCGGCG | CTGGCCTC | CCGCGGTGTCCC | 8 |
GATGTGTTATCG | GACGTTGG | CCTGAACCACCC | 8 |
TGACCGCTTCGA | TCCCCCGA | TCGGGCCCAGCG | 8 |
CTTGGCCTCGGC | CCCCGCGC | ACGCCGATCCGC | 8 |
ACGCTGGTGGTC | GATCCTTC | CGCTACCACTGA | 8 |
AGGGGATGGTGT | GGTCCACA | TCGCAGGCGGTG | 8 |
TACGCAACTGGT | TGACCGTG | GCGACCGCGGCC | 8 |
DNA sequence
GGGCGTGTCTTATTGACTGTGTAAGGGGTTCGGCCTGAATGGTGGTGGCTGACCACCGGACAGGAGAGTTCCATTGCCGCAATCTGATTCGTCAAGAGAT
GATGCTGCCGCCCAGTTGGCCGAGTTGTTGCCGCCGGCGGCAGTCGATGCCTTGTTGGCCGACGCTGAAGCGTCTGGCACCCCGATTGATGGCCCCGAGG
GGTTGCTCGCGCAGATGACCAAGGCGGTGCTCGAACGCGCTTTGGACGTCGAAATCGCCGATCACCTGGGCTATGAGCACGGCGATCCGGCAGGGCATGG
CTCGGGCAATTCCCGTAACGGCCATGGCCGCAAAACCGTGTTGACCACGGCCGGGCCGGTCGAGCTGGAAGTGCCCCGTGACCGCAACGCCACGTTTAGC
CCGGCGATCGTGCCCAAGCGCAAACGCCGCCTGGGCCAGGTTGAGGACATGATCTTGTCGCTGTATGCCCGGGGCATGTCGACGCGCGATATCACCGAGC
ACCTCGGCGAGGTCTATGGCGCCCGCGTGTCGGCGGCCACGATTTCGCGGGTCACCGACGTGGTCACCGAGGAGATCGCCGCCTGGCAATCCCGGCCGGT
CGATCCGGTGTATCCGATCTTGTATATCGACGCGATCCGCATCAAGATCCGCGACGGCGGCGTGGTGGCCAACAAGGCCGCCCACGTGGTCATCGGCGTC
GATGTCGAGGGAATCAAGCAGGTCCTGGGCATCTGGATCCAGCAGAGCGAGGGCGCCAAATTCTGGCACGGGGTGCTCACCGAACTGCGCAATCGCGGGT
GCCGCGATGCGCTGTTCGTGTGTTGCGACGGGTTGGCCGGCCTGCCCGAATCGATCGCGGCGGTCTGGCCGGCCGCGGTGATCCAGACCTGCGTGGTGCA
TCTGCTGCGCTCCTCGATGCGTTATGCCTCCTACGCCGACCGCCGCAAGATGGCCACCGCGCTGCGTCCGATCTACACCGCACCCACCGAAGAGGCCGCC
AAACTGGCCCTCGAGGAGTTCCGCGCCCAGTGGCGCACCAAATCCCCCGGAGCCATCGCTGTCTGGGATCGGGCCTGGGCTGAGTTCGTGCCTTTCCTGG
CATTCCCGGTCGAGATCCGCAAGATCATCTACACCACCAACGCCATCGAATCGCTGAACTACCAGCTGCGCAAAGTCACCAAGGCCCGCGGCTCGTTCCC
CTCAGACGCCGCAGCAATGAAGCTGCTGTATTTGGCCATCCGCAACATCAACCAGAAACGAGGATCAACACACGGACCAGGCACCTACCGCTGGACCGAA
GCACTGAACACCTTCGCCATCCAATTCCCCGACCGACTCCCACTATGACCCAAAGATAAACGGCTGCAACACCTTACACAGTTATCTTGACAAGCCC
GATGCTGCCGCCCAGTTGGCCGAGTTGTTGCCGCCGGCGGCAGTCGATGCCTTGTTGGCCGACGCTGAAGCGTCTGGCACCCCGATTGATGGCCCCGAGG
GGTTGCTCGCGCAGATGACCAAGGCGGTGCTCGAACGCGCTTTGGACGTCGAAATCGCCGATCACCTGGGCTATGAGCACGGCGATCCGGCAGGGCATGG
CTCGGGCAATTCCCGTAACGGCCATGGCCGCAAAACCGTGTTGACCACGGCCGGGCCGGTCGAGCTGGAAGTGCCCCGTGACCGCAACGCCACGTTTAGC
CCGGCGATCGTGCCCAAGCGCAAACGCCGCCTGGGCCAGGTTGAGGACATGATCTTGTCGCTGTATGCCCGGGGCATGTCGACGCGCGATATCACCGAGC
ACCTCGGCGAGGTCTATGGCGCCCGCGTGTCGGCGGCCACGATTTCGCGGGTCACCGACGTGGTCACCGAGGAGATCGCCGCCTGGCAATCCCGGCCGGT
CGATCCGGTGTATCCGATCTTGTATATCGACGCGATCCGCATCAAGATCCGCGACGGCGGCGTGGTGGCCAACAAGGCCGCCCACGTGGTCATCGGCGTC
GATGTCGAGGGAATCAAGCAGGTCCTGGGCATCTGGATCCAGCAGAGCGAGGGCGCCAAATTCTGGCACGGGGTGCTCACCGAACTGCGCAATCGCGGGT
GCCGCGATGCGCTGTTCGTGTGTTGCGACGGGTTGGCCGGCCTGCCCGAATCGATCGCGGCGGTCTGGCCGGCCGCGGTGATCCAGACCTGCGTGGTGCA
TCTGCTGCGCTCCTCGATGCGTTATGCCTCCTACGCCGACCGCCGCAAGATGGCCACCGCGCTGCGTCCGATCTACACCGCACCCACCGAAGAGGCCGCC
AAACTGGCCCTCGAGGAGTTCCGCGCCCAGTGGCGCACCAAATCCCCCGGAGCCATCGCTGTCTGGGATCGGGCCTGGGCTGAGTTCGTGCCTTTCCTGG
CATTCCCGGTCGAGATCCGCAAGATCATCTACACCACCAACGCCATCGAATCGCTGAACTACCAGCTGCGCAAAGTCACCAAGGCCCGCGGCTCGTTCCC
CTCAGACGCCGCAGCAATGAAGCTGCTGTATTTGGCCATCCGCAACATCAACCAGAAACGAGGATCAACACACGGACCAGGCACCTACCGCTGGACCGAA
GCACTGAACACCTTCGCCATCCAATTCCCCGACCGACTCCCACTATGACCCAAAGATAAACGGCTGCAACACCTTACACAGTTATCTTGACAAGCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1233 bp | 410 aa | 116 | 1348 | + | No |
Chemistry : DDE
ORF sequence :
MAELLPPAAVDALLADAEASGTPIDGPEGLLAQMTKAVLERALDVEIADHLGYEHGDPAGHGSGNSRNGHGRKTVLTTAGPVELEVPRDRNATFSPAIVP
KRKRRLGQVEDMILSLYARGMSTRDITEHLGEVYGARVSAATISRVTDVVTEEIAAWQSRPVDPVYPILYIDAIRIKIRDGGVVANKAAHVVIGVDVEGI
KQVLGIWIQQSEGAKFWHGVLTELRNRGCRDALFVCCDGLAGLPESIAAVWPAAVIQTCVVHLLRSSMRYASYADRRKMATALRPIYTAPTEEAAKLALE
EFRAQWRTKSPGAIAVWDRAWAEFVPFLAFPVEIRKIIYTTNAIESLNYQLRKVTKARGSFPSDAAAMKLLYLAIRNINQKRGSTHGPGTYRWTEALNTF
AIQFPDRLPL
KRKRRLGQVEDMILSLYARGMSTRDITEHLGEVYGARVSAATISRVTDVVTEEIAAWQSRPVDPVYPILYIDAIRIKIRDGGVVANKAAHVVIGVDVEGI
KQVLGIWIQQSEGAKFWHGVLTELRNRGCRDALFVCCDGLAGLPESIAAVWPAAVIQTCVVHLLRSSMRYASYADRRKMATALRPIYTAPTEEAAKLALE
EFRAQWRTKSPGAIAVWDRAWAEFVPFLAFPVEIRKIIYTTNAIESLNYQLRKVTKARGSFPSDAAAMKLLYLAIRNINQKRGSTHGPGTYRWTEALNTF
AIQFPDRLPL
Blast result :
Comments
ISMysp7 is 68% aa similar to ISMgi5.
References
1] Romain Guérillot and Philippe Glaser (2013) Direct submission.
2] Kim,B.J., Choi,B.S., Choi,I.Y., Lee,J.H., Chun,J., Hong,S.H., Kook,Y.H. and Kim,B.J. (2012) J. Bacteriol. 194 (15), 4141-4142.
2] Kim,B.J., Choi,B.S., Choi,I.Y., Lee,J.H., Chun,J., Hong,S.H., Kook,Y.H. and Kim,B.J. (2012) J. Bacteriol. 194 (15), 4141-4142.