ISMgi5
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_014814 | ND | Mycobacterium gilvum | Mycobacterium gilvum Spyr1 |
DNA section
IS Length : 1470 bp
Ends
IR Length : 22/27
IRL : GGGCGTGTCAAATGGTCTGTGTAAGTCCTGTTAACGGAAGGATCGCAGGA
IRR : GAGCCTGTCAAGTTTTCTGTGTAAGTCGCCTATCCGATTCGTCCTGAATG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGATCGACCG | GCAGATGC | AGCAAGATCA | 8 |
ACCCGATCCT | GGGCGACT | CGCTGGGCGA | 8 |
GGTCTCGAGC | TCAAACCA | CGGTTGGCGA | 8 |
GCGAGAAGGT | AGTGAGAT | GACAGTTCCC | 8 |
DNA sequence
GGGCGTGTCAAATGGTCTGTGTAAGTCCTGTTAACGGAAGGATCGCAGGACGTGACGACAGGCAAGGACGTGGATTCATCGCTGGTCGAGGCGGGGTCCA
CAGTGGAGATGGCCGAGGCGCTTCGGGCCTCGGGTGCCGTCGATGAGCTGCTGGCTCAGGTCGACTCCGGCGAGGTTGCCCTGACCGGTGAGGGCGGGCT
GCTACCTGGGTTGATCAAGCTGGCTTTGGAGCGCGGGTTGGCCGCTGAGCTCACCGAGCATCTGGGCTATGAGAAGGGCGATCCCATCGGGCGGGCGATG
CCCAACGCCCGTAACGGCCACTCACCCAAGACGGTGCAGTCTGAGGCCGGGCCGGTGGCCCTGGAGGTTCCACGAGACCGCGACGGCTCGTTCACCCCGA
CGCTGGTCCCTAAGGGCGCCCGCCGCATCGGTGGGCTCGATGACATGATCATCTCCCTGTACGCCGGTGGAATGACATTGCGCGACATCCAATTTCACCT
GGCTTCTACGATCGGCACCGAGGTGTCGCATGAGACGATCTCTAAGATCGTCGACGAGATCTCCGATGAGGTACTCAGCTGGCAGCGCCGGCCGCTGGAA
CCGCTGTACCCGGTGATCTACCTCGACGCGATGATCGTGAAGGTCAAAGACGGCGGCCACACCCGCAACAAGGCCGCCCACATCGCCGTGGGCGTGGATA
TGGACGGCGTCAAGCATGTCCTGGGCATCTGGGTTCAGCCCACCGAGGGAGCGTCGTTCTGGGCGTCGGTGTGCTCGGATCTGGCCAATCGCGGCATCAA
GGACGTGCTCATCGTGTGCTGCGACGGACTGACCGGGTTCCCGGAGGCGATCGCGGCGACCTGGTCACAAGCGGCCGTTCAGACGTGCGTGGTGCACCTG
ATCCGCAACGCCTTGCGGTTTGTGTCCTACGGTGACCGCAAGGCCGTAGCCGCAGCACTGAAGCCGATCTACACCGCGCCCAGTGCTGATGCCGCCCACG
CCGAATTGCAGGCGTTCACGACCTCGGAGTTGGGCAAGAAGAACCCCACGGTGACAAAGGCTTTCGAACGGGCCTGGGAGCAGTTCATCCCGTTCCTGGC
GTTTCCGCCGGAGTTGCGTCGGGTGATCTACACGACGAACTCGATCGAATCGCTGAACTACCAGATGCGCAAGGTCATCAAGAACCGCGGCCAGTTCCCC
AACGACGCCTCGGTCGTGAAACTGCTGTGGCTGGCGATCTGCAACATCGAGGACAAACGCGCCGCCGAGCGGGCCAAAGAACGCGGCAAGAAGCTCTGCC
GAACAGCCCCTGGGCGCCTCGTGGAAGGACAGGTAGTCACCAACTGGAAGAAAGCACTCGAACAACTCAGCCTGGTCTACCCAGACCGCATCGAACGCTA
TCTCTAAACACAGCAACACACATTCAGGACGAATCGGATAGGCGACTTACACAGAAAACTTGACAGGCTC
CAGTGGAGATGGCCGAGGCGCTTCGGGCCTCGGGTGCCGTCGATGAGCTGCTGGCTCAGGTCGACTCCGGCGAGGTTGCCCTGACCGGTGAGGGCGGGCT
GCTACCTGGGTTGATCAAGCTGGCTTTGGAGCGCGGGTTGGCCGCTGAGCTCACCGAGCATCTGGGCTATGAGAAGGGCGATCCCATCGGGCGGGCGATG
CCCAACGCCCGTAACGGCCACTCACCCAAGACGGTGCAGTCTGAGGCCGGGCCGGTGGCCCTGGAGGTTCCACGAGACCGCGACGGCTCGTTCACCCCGA
CGCTGGTCCCTAAGGGCGCCCGCCGCATCGGTGGGCTCGATGACATGATCATCTCCCTGTACGCCGGTGGAATGACATTGCGCGACATCCAATTTCACCT
GGCTTCTACGATCGGCACCGAGGTGTCGCATGAGACGATCTCTAAGATCGTCGACGAGATCTCCGATGAGGTACTCAGCTGGCAGCGCCGGCCGCTGGAA
CCGCTGTACCCGGTGATCTACCTCGACGCGATGATCGTGAAGGTCAAAGACGGCGGCCACACCCGCAACAAGGCCGCCCACATCGCCGTGGGCGTGGATA
TGGACGGCGTCAAGCATGTCCTGGGCATCTGGGTTCAGCCCACCGAGGGAGCGTCGTTCTGGGCGTCGGTGTGCTCGGATCTGGCCAATCGCGGCATCAA
GGACGTGCTCATCGTGTGCTGCGACGGACTGACCGGGTTCCCGGAGGCGATCGCGGCGACCTGGTCACAAGCGGCCGTTCAGACGTGCGTGGTGCACCTG
ATCCGCAACGCCTTGCGGTTTGTGTCCTACGGTGACCGCAAGGCCGTAGCCGCAGCACTGAAGCCGATCTACACCGCGCCCAGTGCTGATGCCGCCCACG
CCGAATTGCAGGCGTTCACGACCTCGGAGTTGGGCAAGAAGAACCCCACGGTGACAAAGGCTTTCGAACGGGCCTGGGAGCAGTTCATCCCGTTCCTGGC
GTTTCCGCCGGAGTTGCGTCGGGTGATCTACACGACGAACTCGATCGAATCGCTGAACTACCAGATGCGCAAGGTCATCAAGAACCGCGGCCAGTTCCCC
AACGACGCCTCGGTCGTGAAACTGCTGTGGCTGGCGATCTGCAACATCGAGGACAAACGCGCCGCCGAGCGGGCCAAAGAACGCGGCAAGAAGCTCTGCC
GAACAGCCCCTGGGCGCCTCGTGGAAGGACAGGTAGTCACCAACTGGAAGAAAGCACTCGAACAACTCAGCCTGGTCTACCCAGACCGCATCGAACGCTA
TCTCTAAACACAGCAACACACATTCAGGACGAATCGGATAGGCGACTTACACAGAAAACTTGACAGGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1356 bp | 451 aa | 52 | 1407 | + | No |
Description :
ORF sequence :
MTTGKDVDSSLVEAGSTVEMAEALRASGAVDELLAQVDSGEVALTGEGGLLPGLIKLALERGLAAELTEHLGYEKGDPIGRAMPNARNGHSPKTVQSEAG
PVALEVPRDRDGSFTPTLVPKGARRIGGLDDMIISLYAGGMTLRDIQFHLASTIGTEVSHETISKIVDEISDEVLSWQRRPLEPLYPVIYLDAMIVKVKD
GGHTRNKAAHIAVGVDMDGVKHVLGIWVQPTEGASFWASVCSDLANRGIKDVLIVCCDGLTGFPEAIAATWSQAAVQTCVVHLIRNALRFVSYGDRKAVA
AALKPIYTAPSADAAHAELQAFTTSELGKKNPTVTKAFERAWEQFIPFLAFPPELRRVIYTTNSIESLNYQMRKVIKNRGQFPNDASVVKLLWLAICNIE
DKRAAERAKERGKKLCRTAPGRLVEGQVVTNWKKALEQLSLVYPDRIERYL
PVALEVPRDRDGSFTPTLVPKGARRIGGLDDMIISLYAGGMTLRDIQFHLASTIGTEVSHETISKIVDEISDEVLSWQRRPLEPLYPVIYLDAMIVKVKD
GGHTRNKAAHIAVGVDMDGVKHVLGIWVQPTEGASFWASVCSDLANRGIKDVLIVCCDGLTGFPEAIAATWSQAAVQTCVVHLIRNALRFVSYGDRKAVA
AALKPIYTAPSADAAHAELQAFTTSELGKKNPTVTKAFERAWEQFIPFLAFPPELRRVIYTTNSIESLNYQMRKVIKNRGQFPNDASVVKLLWLAICNIE
DKRAAERAKERGKKLCRTAPGRLVEGQVVTNWKKALEQLSLVYPDRIERYL
Blast result :
Comments
ISMgi5 is 81% aa similar to ISNml4.
References
1] Romain Guérillot and Philippe Glaser (2013) Direct submission.
2] Kallimanis,A., Karabika,E., Mavromatis,K., Lapidus,A., Labutti,K.M., Liolios,K., Ivanova,N., Goodwin,L., Woyke,T., Velentzas,A.D., Perisynakis,A., Ouzounis,C.C., Kyrpides,N.C., Koukkou,A.I. and Drainas,C. (2011) Stand Genomic Sci 5 (1), 144-153.
2] Kallimanis,A., Karabika,E., Mavromatis,K., Lapidus,A., Labutti,K.M., Liolios,K., Ivanova,N., Goodwin,L., Woyke,T., Velentzas,A.D., Perisynakis,A., Ouzounis,C.C., Kyrpides,N.C., Koukkou,A.I. and Drainas,C. (2011) Stand Genomic Sci 5 (1), 144-153.