ISMgi5

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_014814 ND Mycobacterium gilvum
Mycobacterium gilvum Spyr1
DNA section
IS Length : 1470 bp

Ends


IR Length : 22/27

IRL : GGGCGTGTCAAATGGTCTGTGTAAGTCCTGTTAACGGAAGGATCGCAGGA
IRR : GAGCCTGTCAAGTTTTCTGTGTAAGTCGCCTATCCGATTCGTCCTGAATG

Insertion site


Left flankDirect repeatRight flankDR Length
TGATCGACCGGCAGATGCAGCAAGATCA8
ACCCGATCCTGGGCGACTCGCTGGGCGA8
GGTCTCGAGCTCAAACCACGGTTGGCGA8
GCGAGAAGGTAGTGAGATGACAGTTCCC8

DNA sequence

GGGCGTGTCAAATGGTCTGTGTAAGTCCTGTTAACGGAAGGATCGCAGGACGTGACGACAGGCAAGGACGTGGATTCATCGCTGGTCGAGGCGGGGTCCA
CAGTGGAGATGGCCGAGGCGCTTCGGGCCTCGGGTGCCGTCGATGAGCTGCTGGCTCAGGTCGACTCCGGCGAGGTTGCCCTGACCGGTGAGGGCGGGCT
GCTACCTGGGTTGATCAAGCTGGCTTTGGAGCGCGGGTTGGCCGCTGAGCTCACCGAGCATCTGGGCTATGAGAAGGGCGATCCCATCGGGCGGGCGATG
CCCAACGCCCGTAACGGCCACTCACCCAAGACGGTGCAGTCTGAGGCCGGGCCGGTGGCCCTGGAGGTTCCACGAGACCGCGACGGCTCGTTCACCCCGA
CGCTGGTCCCTAAGGGCGCCCGCCGCATCGGTGGGCTCGATGACATGATCATCTCCCTGTACGCCGGTGGAATGACATTGCGCGACATCCAATTTCACCT
GGCTTCTACGATCGGCACCGAGGTGTCGCATGAGACGATCTCTAAGATCGTCGACGAGATCTCCGATGAGGTACTCAGCTGGCAGCGCCGGCCGCTGGAA
CCGCTGTACCCGGTGATCTACCTCGACGCGATGATCGTGAAGGTCAAAGACGGCGGCCACACCCGCAACAAGGCCGCCCACATCGCCGTGGGCGTGGATA
TGGACGGCGTCAAGCATGTCCTGGGCATCTGGGTTCAGCCCACCGAGGGAGCGTCGTTCTGGGCGTCGGTGTGCTCGGATCTGGCCAATCGCGGCATCAA
GGACGTGCTCATCGTGTGCTGCGACGGACTGACCGGGTTCCCGGAGGCGATCGCGGCGACCTGGTCACAAGCGGCCGTTCAGACGTGCGTGGTGCACCTG
ATCCGCAACGCCTTGCGGTTTGTGTCCTACGGTGACCGCAAGGCCGTAGCCGCAGCACTGAAGCCGATCTACACCGCGCCCAGTGCTGATGCCGCCCACG
CCGAATTGCAGGCGTTCACGACCTCGGAGTTGGGCAAGAAGAACCCCACGGTGACAAAGGCTTTCGAACGGGCCTGGGAGCAGTTCATCCCGTTCCTGGC
GTTTCCGCCGGAGTTGCGTCGGGTGATCTACACGACGAACTCGATCGAATCGCTGAACTACCAGATGCGCAAGGTCATCAAGAACCGCGGCCAGTTCCCC
AACGACGCCTCGGTCGTGAAACTGCTGTGGCTGGCGATCTGCAACATCGAGGACAAACGCGCCGCCGAGCGGGCCAAAGAACGCGGCAAGAAGCTCTGCC
GAACAGCCCCTGGGCGCCTCGTGGAAGGACAGGTAGTCACCAACTGGAAGAAAGCACTCGAACAACTCAGCCTGGTCTACCCAGACCGCATCGAACGCTA
TCTCTAAACACAGCAACACACATTCAGGACGAATCGGATAGGCGACTTACACAGAAAACTTGACAGGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1356 bp451 aa521407+No
ORF function : Transposase
Description :

ORF sequence :

MTTGKDVDSSLVEAGSTVEMAEALRASGAVDELLAQVDSGEVALTGEGGLLPGLIKLALERGLAAELTEHLGYEKGDPIGRAMPNARNGHSPKTVQSEAG
PVALEVPRDRDGSFTPTLVPKGARRIGGLDDMIISLYAGGMTLRDIQFHLASTIGTEVSHETISKIVDEISDEVLSWQRRPLEPLYPVIYLDAMIVKVKD
GGHTRNKAAHIAVGVDMDGVKHVLGIWVQPTEGASFWASVCSDLANRGIKDVLIVCCDGLTGFPEAIAATWSQAAVQTCVVHLIRNALRFVSYGDRKAVA
AALKPIYTAPSADAAHAELQAFTTSELGKKNPTVTKAFERAWEQFIPFLAFPPELRRVIYTTNSIESLNYQMRKVIKNRGQFPNDASVVKLLWLAICNIE
DKRAAERAKERGKKLCRTAPGRLVEGQVVTNWKKALEQLSLVYPDRIERYL

 

Blast result :
Comments
ISMgi5 is 81% aa similar to ISNml4.
References
1] Romain Guérillot and Philippe Glaser (2013) Direct submission.
2] Kallimanis,A., Karabika,E., Mavromatis,K., Lapidus,A., Labutti,K.M., Liolios,K., Ivanova,N., Goodwin,L., Woyke,T., Velentzas,A.D., Perisynakis,A., Ouzounis,C.C., Kyrpides,N.C., Koukkou,A.I. and Drainas,C. (2011) Stand Genomic Sci 5 (1), 144-153.