ISMlu11

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_012803 ND Micrococcus luteus
Micrococcus luteus NCTC 2665
Streptococcus anginosus subsp. whileyi CCUG 39159
DNA section
IS Length : 1434 bp

Ends


IR Length : 24/28

IRL : GGGCGTGTCAGATGGTCTGTGTAAGCCGTACCGAGAGGAACGGTAAGAAT
IRR : GGGCGTGTCAACTTGTCTGTGTAAGCGGGGTGGTCACAGGTAGGGGTTGA

Insertion site


Left flankDirect repeatRight flankDR Length
CGGTTTCTCGACAACTCCACTCTCGCA7
TCTTCGACCGCCGCGCACCCTCGATGCC8
CGCCACCCGCGTGGTGGCCG0
TCACCGTCTACGACGACGAGAACCCCGC8
TGAAGCTCTGATGCGTGAAGAACCGAAG8

DNA sequence

GGGCGTGTCAGATGGTCTGTGTAAGCCGTACCGAGAGGAACGGTAAGAATCATGACCATGACCGACGAGAAGAACCCAGGCGAGCCCTCGGGCCAGGACC
TGGTCGAGCAGCTGAAAGCCTCAGGGCAGCTTGATGCCCTGTTCGCGCAGATCGACGCGGGCGGCGTCGAGCTCACCGGTGACGGCGGGTTCGTGCCCGC
GCTGGTCAAGGCCGCGCTCGAGCGGGGCCTGCAGGCCGAGCTGACCAGCCATCTGGGCTACGAGAAGGGCTCGAGCGAGGCGCTGAAGCACGCCAACTCC
CGCAACGGGACCACCCCGAAGACCGTGGAGTCCGAGGTCGGGCCGATCGAGCTGGACGTCCCGCGAGACCGGGGCGGGTCGTTCACCCCGCGCCTGGTGC
CCAAGGGCCAGCGGCGCCTCGGGGGCCTGGATGACATGATCATCAGCCTCTATGCCGGCGGAATGACGATCCGGGACATCCAGCACCACCTGGCCTCCAC
GATCGGCACGGACCTGTCGCACGAGACGATCTCCAACATCACCGACGCCGTGAGCGAAGAGGTCCTGGCGTGGCAGTCGCGGCCGCTGGAGGAGTTCTAT
CCGGTGATCTATCTCGACGCAATCCGGATCAAGATCCGAGAGAACAGCCAGGTCCTCAACCGTGCCGCCTACATCGCCGTCGGCGTGGACCTCGAGGGCA
TCAAGCACGTGCTGGGGATCTGGGTCCAGGACACCGAGGGCTCGGCGTTCTGGGCCCACGTCTGCGCCGATCTCGCCAACCGGGGCGTGCAGGACGTGCT
GATCGTGTGCTGCGACGGGCTCAAGGGCCTGCCGGAGGCGATCGAGGCGACGTGGCCGGACTCGATGGTCCAGACCTGCGTGGTTCACCTGATCCGGGCC
GCGATGCGGTTCGTGGCCTACCAGGACCGCAAGAAGGTCGCCGCCGCGCTGAAGCCGATCTACACTGCCCCCAACGAAGAGACCGCGAGGAAGGCGCTGG
CCGAGTTCGAGGCCTCCGAGCTCGGCACGAAGTACCCGTCTGCAGCCGCGACCTGGGCGAACTCCTGGGAGCGGTTCATCCCGTTCCTGCAGTTCCCACC
CATGCTCCGCAAGGTCATCTACACGACCAACAGCATCGAGTCGCTGAACTTCCAGCTACGGAAGGTGACCAAGAACCGCGGCCACTTCCCCTCGACCGAG
GCGGCGGTGAAGCTGCTCTGGCTGGCGATCTGCAACATCGAAGACAAACGCGCCGCCGAACGCGCTCGGGACCGGGGCAAACCCGCCGGCCAGCGCAAAG
CCCAGGGCCGGCTCGTCGAAGGTCAGGCCGTCACGAACTGGAAGCAGGCCCTCGCCCAGCTCGCCGCGGCCTACCCCGACCGGATCAACCCCTACCTGTG
ACCACCCCGCTTACACAGACAAGTTGACACGCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1344 bp447 aa581401+No
ORF function : Transposase
Description :

ORF sequence :

MTDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPALVKAALERGLQAELTSHLGYEKGSSEALKHANSRNGTTPKTVESEVGPIELD
VPRDRGGSFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSEEVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVL
NRAAYIAVGVDLEGIKHVLGIWVQDTEGSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAIEATWPDSMVQTCVVHLIRAAMRFVAYQDRKKVAAALKP
IYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFPPMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAA
ERARDRGKPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL

 

Blast result :
Comments
ISMlu11 is 80% aa similar to ISNml4.
References
1] Romain Guérillot and Philippe Glaser (2013) Direct submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Lowry,S., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Young,M. and Greenblatt,C. (2009) Direct submission GenBank.