ISMlu11
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_012803 | ND | Micrococcus luteus | Micrococcus luteus NCTC 2665
Streptococcus anginosus subsp. whileyi CCUG 39159 |
DNA section
IS Length : 1434 bp
Ends
IR Length : 24/28
IRL : GGGCGTGTCAGATGGTCTGTGTAAGCCGTACCGAGAGGAACGGTAAGAAT
IRR : GGGCGTGTCAACTTGTCTGTGTAAGCGGGGTGGTCACAGGTAGGGGTTGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGGTTTCTCG | ACAACTC | CACTCTCGCA | 7 |
TCTTCGACCG | CCGCGCAC | CCTCGATGCC | 8 |
CGCCACCCGC | GTGGTGGCCG | 0 | |
TCACCGTCTA | CGACGACG | AGAACCCCGC | 8 |
TGAAGCTCTG | ATGCGTGA | AGAACCGAAG | 8 |
DNA sequence
GGGCGTGTCAGATGGTCTGTGTAAGCCGTACCGAGAGGAACGGTAAGAATCATGACCATGACCGACGAGAAGAACCCAGGCGAGCCCTCGGGCCAGGACC
TGGTCGAGCAGCTGAAAGCCTCAGGGCAGCTTGATGCCCTGTTCGCGCAGATCGACGCGGGCGGCGTCGAGCTCACCGGTGACGGCGGGTTCGTGCCCGC
GCTGGTCAAGGCCGCGCTCGAGCGGGGCCTGCAGGCCGAGCTGACCAGCCATCTGGGCTACGAGAAGGGCTCGAGCGAGGCGCTGAAGCACGCCAACTCC
CGCAACGGGACCACCCCGAAGACCGTGGAGTCCGAGGTCGGGCCGATCGAGCTGGACGTCCCGCGAGACCGGGGCGGGTCGTTCACCCCGCGCCTGGTGC
CCAAGGGCCAGCGGCGCCTCGGGGGCCTGGATGACATGATCATCAGCCTCTATGCCGGCGGAATGACGATCCGGGACATCCAGCACCACCTGGCCTCCAC
GATCGGCACGGACCTGTCGCACGAGACGATCTCCAACATCACCGACGCCGTGAGCGAAGAGGTCCTGGCGTGGCAGTCGCGGCCGCTGGAGGAGTTCTAT
CCGGTGATCTATCTCGACGCAATCCGGATCAAGATCCGAGAGAACAGCCAGGTCCTCAACCGTGCCGCCTACATCGCCGTCGGCGTGGACCTCGAGGGCA
TCAAGCACGTGCTGGGGATCTGGGTCCAGGACACCGAGGGCTCGGCGTTCTGGGCCCACGTCTGCGCCGATCTCGCCAACCGGGGCGTGCAGGACGTGCT
GATCGTGTGCTGCGACGGGCTCAAGGGCCTGCCGGAGGCGATCGAGGCGACGTGGCCGGACTCGATGGTCCAGACCTGCGTGGTTCACCTGATCCGGGCC
GCGATGCGGTTCGTGGCCTACCAGGACCGCAAGAAGGTCGCCGCCGCGCTGAAGCCGATCTACACTGCCCCCAACGAAGAGACCGCGAGGAAGGCGCTGG
CCGAGTTCGAGGCCTCCGAGCTCGGCACGAAGTACCCGTCTGCAGCCGCGACCTGGGCGAACTCCTGGGAGCGGTTCATCCCGTTCCTGCAGTTCCCACC
CATGCTCCGCAAGGTCATCTACACGACCAACAGCATCGAGTCGCTGAACTTCCAGCTACGGAAGGTGACCAAGAACCGCGGCCACTTCCCCTCGACCGAG
GCGGCGGTGAAGCTGCTCTGGCTGGCGATCTGCAACATCGAAGACAAACGCGCCGCCGAACGCGCTCGGGACCGGGGCAAACCCGCCGGCCAGCGCAAAG
CCCAGGGCCGGCTCGTCGAAGGTCAGGCCGTCACGAACTGGAAGCAGGCCCTCGCCCAGCTCGCCGCGGCCTACCCCGACCGGATCAACCCCTACCTGTG
ACCACCCCGCTTACACAGACAAGTTGACACGCCC
TGGTCGAGCAGCTGAAAGCCTCAGGGCAGCTTGATGCCCTGTTCGCGCAGATCGACGCGGGCGGCGTCGAGCTCACCGGTGACGGCGGGTTCGTGCCCGC
GCTGGTCAAGGCCGCGCTCGAGCGGGGCCTGCAGGCCGAGCTGACCAGCCATCTGGGCTACGAGAAGGGCTCGAGCGAGGCGCTGAAGCACGCCAACTCC
CGCAACGGGACCACCCCGAAGACCGTGGAGTCCGAGGTCGGGCCGATCGAGCTGGACGTCCCGCGAGACCGGGGCGGGTCGTTCACCCCGCGCCTGGTGC
CCAAGGGCCAGCGGCGCCTCGGGGGCCTGGATGACATGATCATCAGCCTCTATGCCGGCGGAATGACGATCCGGGACATCCAGCACCACCTGGCCTCCAC
GATCGGCACGGACCTGTCGCACGAGACGATCTCCAACATCACCGACGCCGTGAGCGAAGAGGTCCTGGCGTGGCAGTCGCGGCCGCTGGAGGAGTTCTAT
CCGGTGATCTATCTCGACGCAATCCGGATCAAGATCCGAGAGAACAGCCAGGTCCTCAACCGTGCCGCCTACATCGCCGTCGGCGTGGACCTCGAGGGCA
TCAAGCACGTGCTGGGGATCTGGGTCCAGGACACCGAGGGCTCGGCGTTCTGGGCCCACGTCTGCGCCGATCTCGCCAACCGGGGCGTGCAGGACGTGCT
GATCGTGTGCTGCGACGGGCTCAAGGGCCTGCCGGAGGCGATCGAGGCGACGTGGCCGGACTCGATGGTCCAGACCTGCGTGGTTCACCTGATCCGGGCC
GCGATGCGGTTCGTGGCCTACCAGGACCGCAAGAAGGTCGCCGCCGCGCTGAAGCCGATCTACACTGCCCCCAACGAAGAGACCGCGAGGAAGGCGCTGG
CCGAGTTCGAGGCCTCCGAGCTCGGCACGAAGTACCCGTCTGCAGCCGCGACCTGGGCGAACTCCTGGGAGCGGTTCATCCCGTTCCTGCAGTTCCCACC
CATGCTCCGCAAGGTCATCTACACGACCAACAGCATCGAGTCGCTGAACTTCCAGCTACGGAAGGTGACCAAGAACCGCGGCCACTTCCCCTCGACCGAG
GCGGCGGTGAAGCTGCTCTGGCTGGCGATCTGCAACATCGAAGACAAACGCGCCGCCGAACGCGCTCGGGACCGGGGCAAACCCGCCGGCCAGCGCAAAG
CCCAGGGCCGGCTCGTCGAAGGTCAGGCCGTCACGAACTGGAAGCAGGCCCTCGCCCAGCTCGCCGCGGCCTACCCCGACCGGATCAACCCCTACCTGTG
ACCACCCCGCTTACACAGACAAGTTGACACGCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1344 bp | 447 aa | 58 | 1401 | + | No |
Description :
ORF sequence :
MTDEKNPGEPSGQDLVEQLKASGQLDALFAQIDAGGVELTGDGGFVPALVKAALERGLQAELTSHLGYEKGSSEALKHANSRNGTTPKTVESEVGPIELD
VPRDRGGSFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSEEVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVL
NRAAYIAVGVDLEGIKHVLGIWVQDTEGSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAIEATWPDSMVQTCVVHLIRAAMRFVAYQDRKKVAAALKP
IYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFPPMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAA
ERARDRGKPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
VPRDRGGSFTPRLVPKGQRRLGGLDDMIISLYAGGMTIRDIQHHLASTIGTDLSHETISNITDAVSEEVLAWQSRPLEEFYPVIYLDAIRIKIRENSQVL
NRAAYIAVGVDLEGIKHVLGIWVQDTEGSAFWAHVCADLANRGVQDVLIVCCDGLKGLPEAIEATWPDSMVQTCVVHLIRAAMRFVAYQDRKKVAAALKP
IYTAPNEETARKALAEFEASELGTKYPSAAATWANSWERFIPFLQFPPMLRKVIYTTNSIESLNFQLRKVTKNRGHFPSTEAAVKLLWLAICNIEDKRAA
ERARDRGKPAGQRKAQGRLVEGQAVTNWKQALAQLAAAYPDRINPYL
Blast result :
Comments
ISMlu11 is 80% aa similar to ISNml4.
References
1] Romain Guérillot and Philippe Glaser (2013) Direct submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Lowry,S., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Young,M. and Greenblatt,C. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Lowry,S., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Young,M. and Greenblatt,C. (2009) Direct submission GenBank.