ISOan8

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_DS990574.1 ND Octadecabacter antarcticus
Octadecabacter antarcticus 307
DNA section
IS Length : 1387 bp

Ends


IR Length : 21/27

IRL : GAGTTATGACTGAATCTGGTGTTTGGGCGGTTTGAAGGTTGGCGGCGTAT
IRR : GAGTTATTGTCAAATCTGGTGTTTGAGGTTTGTCGGTCATGCGGCGATCT

Insertion site


Left flankDirect repeatRight flankDR Length
GGTCCGGCGAATCCGGACAGCGTGCTAAG9

DNA sequence

GAGTTATGACTGAATCTGGTGTTTGGGCGGTTTGAAGGTTGGCGGCGTATCTGGTTGAATTGTTGTTGCGAGACAGCAGCCCAATCGAAGGAGATACACC
ACCGTGGAAACGACTAACATTGTTGATTTTGCGCGTCGAGACGGGATGACTGACGCGTTAACGGAATTGCTGAAGTCTGGAGCGCAGGAATTGATAGCAT
CAGCCGTAGAGGCCGAACTGGCATGCTACATGGTGCAGTTCTCCGAAGTGCGGACCCAGTCGGGCCACGCGGCTGTCGTGCGCAACGGGCATCATCCAGC
CCGCCCTTTTCAAACAGGTATCGGGCCTGTGAGCGTGCGGATACCCAAGGTCCGCTCAAAAGACGGCACGCCCGTGACCTTTCGCTCCGCCCTGGTGCCG
CTCTATGTGCGTAGAACCAAGTCGCTGGAAGCAGCCTTGCCCTGGCTTTACCTTAAAGGTGTTTCCAGCGGTGAGATGGGCGCGGCCCTCAAGGTCCTGC
TCGGCCCTGATGCGGCGGGATTATCCGCTAACACGGTGTCACGCCTCAAGCGGGGTTGGGCTACCGAGTATGATGGCTGGCGAAAGACTGCATTGGACGA
CGAGCCAATCGTCTATATCTGGGCTGACGGCGTCCACAGCGGCTTGCGCGGAACCGACGACAAGCTCTGCGCCCTTGTGATTGTTGGCGTGAAAGCACGT
GGCAAGAAGCGGTTCTTGGCCATTGAGGACGGGGTGCGCAAGTCCACTCAAAGCTGGCGTGAGGTTCTTCTCAACCTCAAAGAGCGAGGCATGAACGCGC
CAAAGCTGGCTATCGGGGATGGTGCTATGGGGTTCTGGGCTGCAATGGATGAAGTATATCCCGCAGCGCGTCAACAACGCCGCTGGCAGCACAAAGCGAT
GAACGTGCTCAATTGTCTGCCAAAGCTGTCTCAACCAAAGGCAAAAGTCGCGATACACGATATCTGGCAGGCTGAAACCAAAGATGATGCGATCAAGGCT
TTTGATTTGTTCGTCAAAACCTATGAGGCAAAGTATCCCAAGGCCACCCTGTGCCTACAAAAGGACCGTGAGGAGCTCATGGCATTCTTCGACTTTCCAG
CCCAGCATTGGCAAAGCATACGCACCAGCAATCCGATTGAGTCTGCGTTCGCCACAATCAGGCATCGTACCAAGCGTTCAAAGGGCTGCCTCACCCGCGA
CGGCATGTTGCACATGATGTTCAAACTGGGGCAATGCGCCGAACAAAGCTGGAGAAAATTACGCGGCTTTGATTACCTCGCCAAAGTCATCACAGGCGTC
ACGTTCAAAGACGGAATTGAAGCCACAAACCCAGACCAGATCGCCGCATGACCGACAAACCTCAAACACCAGATTTGACAATAACTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1248 bp415 aa1041351+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

METTNIVDFARRDGMTDALTELLKSGAQELIASAVEAELACYMVQFSEVRTQSGHAAVVRNGHHPARPFQTGIGPVSVRIPKVRSKDGTPVTFRSALVPL
YVRRTKSLEAALPWLYLKGVSSGEMGAALKVLLGPDAAGLSANTVSRLKRGWATEYDGWRKTALDDEPIVYIWADGVHSGLRGTDDKLCALVIVGVKARG
KKRFLAIEDGVRKSTQSWREVLLNLKERGMNAPKLAIGDGAMGFWAAMDEVYPAARQQRRWQHKAMNVLNCLPKLSQPKAKVAIHDIWQAETKDDAIKAF
DLFVKTYEAKYPKATLCLQKDREELMAFFDFPAQHWQSIRTSNPIESAFATIRHRTKRSKGCLTRDGMLHMMFKLGQCAEQSWRKLRGFDYLAKVITGVT
FKDGIEATNPDQIAA

 

Blast result :
Comments
ISOan8 is 92% aa similar to ISOan6.
References
1] Romain Guérillot and Philippe Glaser (2013) Direct submission.
2] Brinkhoff,T., Wawrik,B., Simon,M., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2008) Direct submission GenBank.