ISOan9
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_DS990628.1 | ND | Octadecabacter antarcticus | Octadecabacter antarcticus 238 |
DNA section
IS Length : 1401 bp
Ends
IR Length : 21/25
IRL : GAGTTATGCGGAAATTTGGGTGATGGCGTGATTTGAAAGGCGGCGTATTG
IRR : GAGCTATGCTTGAATTTGGGTGATGCGCTTTATCAGGCGGCGCGGTTTTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCTAAGGTGC | CTGCACGCA | AAGTAATTAT | 9 |
DNA sequence
GAGTTATGCGGAAATTTGGGTGATGGCGTGATTTGAAAGGCGGCGTATTGTGGCAGGTGTCAAATCCAGCCAGAACCTCACGAGGAGCAATACGCCTATG
AAGAACGATACACCGAGCCTTCCGTTTCGCCAATCGGAAACGATCGTAGATCCGCTGTCAGAACTTGCACGGGAGGGTGCTCGGCGGATGCTGGCGGAAG
CGCTGAAAGCCGAAGCTGATGCATTTGTCGCCAGTTTTTTAGATGAACAGCTGGAGGATGGCCGCCAGCGGATTGTGCGGCATGGATTTGGCCCTGAACG
GCAGATCCAGACCGGTATTGGTGCTCTGGATGTTCAACGGCCCAAGGTGCGCGACCGGCTGGCGACATCTGATCCGTCTACAAAGATACGCTTTACGTCG
AACATACTGCCGAAATGGGCGCGCCGCTCGGTGAGCTTGGATGCCTTGCTGCCGGTGCTGTATCTGAAGGGCATTTCTACGGGTGATTTCCAAGAGGCGC
TCTCAGCCATTATGGGCCCTGATGCGCCCAACCTGTCGCCAAGTGTCATATCACGACTGACGGCAGGGTGGCAGACACAATATGACACCTGGATACGGCG
TGACCTGTCTGCACGTCACTACGTCTACATTTGGGCGGATGGCGTCTATCTACAGGCCCGGATGGAGGAAAATGCTGAATGTATACTGGTGATCATCGGC
GCGACACCTGAGGGCAAGAAAGAACTGATTGGCTTTCAGGTCGGCCTTCGGGAGAGCGCACAAAGCTGGCATGAGTTGCTGGCTGACATAAAGGGTCGCG
GGTTGTCTGTCGCACCGGAAATTGCGGTTGGTGATGGGGCCATGGGGTTCTGGAATGCACTGGACAGAGCGTTTCCAAGCACAAAACATCAGCGCTGTTG
GGTTCATAAGCTGAAGAACGTCCTGAACTGCTTTCCAAAGCAGATGGCCCCAGCCGTGAAATCAGACCTGGACGATATCCAGCACGCAGGGACGCGTAAA
CAAGCAGACGCGGCGCTCGCAATGTTTTCCGAGAAGTACGGAGCCAAATATCCAAAGGGCGTAACCTGCCTGATCAAGGATCAAGAAGCGATGCTCGCAT
TCTTCGATTTCCCGGCTGAACATTGGGGCCATTTACGCACGTCAAACCCCATTGAAAGCGTGTTTGCCACTGTGCGGCATCGCACGGTGCGCACCAAAGG
CGCGCTGTCACAAAAGACCGCGAAGTTGATGGTCTTTACCCTCATTCAAGCTGCATCAAAGAAATGGCTGCGTCTCAAGGGCAGAAACCAGTTGCCAAAA
GTCATCGAAGGAACCAAATTCAACGACGGTGTCGAAGCGACCGACGACGCCGAAAACCGCGCCGCCTGATAAAGCGCATCACCCAAATTCAAGCATAGCT
C
AAGAACGATACACCGAGCCTTCCGTTTCGCCAATCGGAAACGATCGTAGATCCGCTGTCAGAACTTGCACGGGAGGGTGCTCGGCGGATGCTGGCGGAAG
CGCTGAAAGCCGAAGCTGATGCATTTGTCGCCAGTTTTTTAGATGAACAGCTGGAGGATGGCCGCCAGCGGATTGTGCGGCATGGATTTGGCCCTGAACG
GCAGATCCAGACCGGTATTGGTGCTCTGGATGTTCAACGGCCCAAGGTGCGCGACCGGCTGGCGACATCTGATCCGTCTACAAAGATACGCTTTACGTCG
AACATACTGCCGAAATGGGCGCGCCGCTCGGTGAGCTTGGATGCCTTGCTGCCGGTGCTGTATCTGAAGGGCATTTCTACGGGTGATTTCCAAGAGGCGC
TCTCAGCCATTATGGGCCCTGATGCGCCCAACCTGTCGCCAAGTGTCATATCACGACTGACGGCAGGGTGGCAGACACAATATGACACCTGGATACGGCG
TGACCTGTCTGCACGTCACTACGTCTACATTTGGGCGGATGGCGTCTATCTACAGGCCCGGATGGAGGAAAATGCTGAATGTATACTGGTGATCATCGGC
GCGACACCTGAGGGCAAGAAAGAACTGATTGGCTTTCAGGTCGGCCTTCGGGAGAGCGCACAAAGCTGGCATGAGTTGCTGGCTGACATAAAGGGTCGCG
GGTTGTCTGTCGCACCGGAAATTGCGGTTGGTGATGGGGCCATGGGGTTCTGGAATGCACTGGACAGAGCGTTTCCAAGCACAAAACATCAGCGCTGTTG
GGTTCATAAGCTGAAGAACGTCCTGAACTGCTTTCCAAAGCAGATGGCCCCAGCCGTGAAATCAGACCTGGACGATATCCAGCACGCAGGGACGCGTAAA
CAAGCAGACGCGGCGCTCGCAATGTTTTCCGAGAAGTACGGAGCCAAATATCCAAAGGGCGTAACCTGCCTGATCAAGGATCAAGAAGCGATGCTCGCAT
TCTTCGATTTCCCGGCTGAACATTGGGGCCATTTACGCACGTCAAACCCCATTGAAAGCGTGTTTGCCACTGTGCGGCATCGCACGGTGCGCACCAAAGG
CGCGCTGTCACAAAAGACCGCGAAGTTGATGGTCTTTACCCTCATTCAAGCTGCATCAAAGAAATGGCTGCGTCTCAAGGGCAGAAACCAGTTGCCAAAA
GTCATCGAAGGAACCAAATTCAACGACGGTGTCGAAGCGACCGACGACGCCGAAAACCGCGCCGCCTGATAAAGCGCATCACCCAAATTCAAGCATAGCT
C
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1320 bp | 439 aa | 50 | 1369 | + | No |
Chemistry : DDE
ORF sequence :
MAGVKSSQNLTRSNTPMKNDTPSLPFRQSETIVDPLSELAREGARRMLAEALKAEADAFVASFLDEQLEDGRQRIVRHGFGPERQIQTGIGALDVQRPKV
RDRLATSDPSTKIRFTSNILPKWARRSVSLDALLPVLYLKGISTGDFQEALSAIMGPDAPNLSPSVISRLTAGWQTQYDTWIRRDLSARHYVYIWADGVY
LQARMEENAECILVIIGATPEGKKELIGFQVGLRESAQSWHELLADIKGRGLSVAPEIAVGDGAMGFWNALDRAFPSTKHQRCWVHKLKNVLNCFPKQMA
PAVKSDLDDIQHAGTRKQADAALAMFSEKYGAKYPKGVTCLIKDQEAMLAFFDFPAEHWGHLRTSNPIESVFATVRHRTVRTKGALSQKTAKLMVFTLIQ
AASKKWLRLKGRNQLPKVIEGTKFNDGVEATDDAENRAA
RDRLATSDPSTKIRFTSNILPKWARRSVSLDALLPVLYLKGISTGDFQEALSAIMGPDAPNLSPSVISRLTAGWQTQYDTWIRRDLSARHYVYIWADGVY
LQARMEENAECILVIIGATPEGKKELIGFQVGLRESAQSWHELLADIKGRGLSVAPEIAVGDGAMGFWNALDRAFPSTKHQRCWVHKLKNVLNCFPKQMA
PAVKSDLDDIQHAGTRKQADAALAMFSEKYGAKYPKGVTCLIKDQEAMLAFFDFPAEHWGHLRTSNPIESVFATVRHRTVRTKGALSQKTAKLMVFTLIQ
AASKKWLRLKGRNQLPKVIEGTKFNDGVEATDDAENRAA
Blast result :
Comments
ISOan9 is 78% aa similar to ISMex3.
References
1] Romain Guérillot and Philippe Glaser (2013) Direct submission.
2] Brinkhoff,T., Wawrik,B., Simon,M., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2008) Direct submission GenBank.
2] Brinkhoff,T., Wawrik,B., Simon,M., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2008) Direct submission GenBank.