ISMrh1

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AGIQ01000009.1 ND Mycobacterium rhodesiae
Mycobacterium rhodesiae JS60
DNA section
IS Length : 1472 bp

Ends


IR Length : 21/27

IRL : GAGCAATGATCAGAACCTGTGGATGAGCCTCGGTGGGGCGGCGTGAAAGT
IRR : GAGATATTGTCAAGACCTGTGGATGAGGTTATTTCAGGCGACCTCCGTTT

Insertion site


Left flankDirect repeatRight flankDR Length
GTGACAACATGGTCGATACCCCAAACCACCA9
CGCACAGCGCGAATCCAATTTTCGTGACGTC8

DNA sequence

GAGCAATGATCAGAACCTGTGGATGAGCCTCGGTGGGGCGGCGTGAAAGTGGGCGCACCTTCCCGAGGATGATCTGAAAGTCCAGTAGCTCTGATCAAGA
CCGGCGTTGGCGCGCTGGTTGGGAAGGTACGCCCATGCTCACCGTAGTTCAGGATGCCCGTGAGGCCAACGGCAACGGGGCCGGACGCCGATCGTTGCTC
GATGAAATCGTTCGCGACGGCGCGCGGCAGATGTTGGCGGCGGCATTGCAGGCTGAGGTCGCCGCCTATGTCGAGCAGTTCGCCGATCAACTCGACGAGA
ACGGCCGACGGTTGGTGGTCCGCAACGGCTATCACCACGAACGTGAAGTCCTGACCGCGGCGGGTGCGGTGACGGTGACCGCGCCGCGGGTCAACGACAA
ACGTGTCGATGCCGATACTGGTGAACGGCAGCGGTTTTCCTCGGCGATCCTGCCAGCGTGGGCGCGCAAGTCCCCGCAGATGACCGAGGTGCTGCCGCTG
CTGTACCTGCATGGCCTGTCGACCAGTGACTTCGGCCCAGCTTTGGAGCAGTTCCTGGGCACGGCCGCGGGGCTCTCAGCAACGACGATCACGCGGCTCA
CCAGCCAGTGGCAGGACGAGGCGAAGGCCTTCGGTGATCGTGACCTCTCGGGCACCGATTACGTCTACCTGTGGGTCGACGGCATCCACCTCAAGGTCCG
CCTTGAGCAGGAAAAGCTGTGCCTGCTGGTGATGATCGGGGTGCGTGCCGATGGCCGCAAAGAGCTCGTCGCCCTGGCCGACGGGTATCGAGAGTCGACC
GAGTCGTGGGCGGATCTGCTGCGGTCGTGCCGCCGCCGCGGGATGGCCGCGCCGGTGCTGGCCGTCGGTGATGGCGCGTTGGGGTTCTGGAAGGCGGTCC
GGGAAGTGTTCCCGGCCACCCGGGAGCAGCGGTGCTGGTTCCACAAGCAGGCCAATGTGCTTGCCGCGCTGCCGAAGTCAGCGCACCCTGGGGCATTGGC
GGCGATCAAGGAGATCTACAACGCCGAGGACATCGACAAGGCCCAGGTCGCGATCAAGGCCTTCGCGCTCGACTACGGCGCCAAGTATCCCAAGGCGGTC
GCGAAGATCGTCGACGACGCCGATGTCCTGCTGGAGTTCTACAAATATCCGGCCGAGCATTGGATCCATTTGAGGACGACGAATCCGATCGAGTCGACGT
TCGCCACCGTGCGGTTGCGGACAAAGGTCACCAAGGGCCCAGGATCACGCGCTGCGGGAATTGCCATGGCCTACAAGCTGATCGACGCCGCGCAGGCCCG
CTGGCGGGCCGTGAACGCTCCACACTTGGTCGCCCTCGTCCGTGCCGGCGCGGTGTTCCACAAGGGCAAGCTACTCGAACGGCCCGTCGACATCACACCC
GCCGAGAATGGCGAATCAACCGAAACGGAGGTCGCCTGAAATAACCTCATCCACAGGTCTTGACAATATCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1305 bp434 aa1351439+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLTVVQDAREANGNGAGRRSLLDEIVRDGARQMLAAALQAEVAAYVEQFADQLDENGRRLVVRNGYHHEREVLTAAGAVTVTAPRVNDKRVDADTGERQR
FSSAILPAWARKSPQMTEVLPLLYLHGLSTSDFGPALEQFLGTAAGLSATTITRLTSQWQDEAKAFGDRDLSGTDYVYLWVDGIHLKVRLEQEKLCLLVM
IGVRADGRKELVALADGYRESTESWADLLRSCRRRGMAAPVLAVGDGALGFWKAVREVFPATREQRCWFHKQANVLAALPKSAHPGALAAIKEIYNAEDI
DKAQVAIKAFALDYGAKYPKAVAKIVDDADVLLEFYKYPAEHWIHLRTTNPIESTFATVRLRTKVTKGPGSRAAGIAMAYKLIDAAQARWRAVNAPHLVA
LVRAGAVFHKGKLLERPVDITPAENGESTETEVA

 

Blast result :
Comments
ISMrh1 is 94% aa similar to IS666.
References
1] Romain Guérillot and Philippe Glaser (2013) Direct submission.
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Land,M.L., Hauser,L., Mattes,T., Holmes,A., Rutledge,P., Paulsen,I., Coleman,N. and Woyke,T.J. (2011) Direct submission GenBank.