ISMrh1
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AGIQ01000009.1 | ND | Mycobacterium rhodesiae | Mycobacterium rhodesiae JS60 |
DNA section
IS Length : 1472 bp
Ends
IR Length : 21/27
IRL : GAGCAATGATCAGAACCTGTGGATGAGCCTCGGTGGGGCGGCGTGAAAGT
IRR : GAGATATTGTCAAGACCTGTGGATGAGGTTATTTCAGGCGACCTCCGTTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTGACAACATGG | TCGATACCC | CAAACCACCA | 9 |
CGCACAGCGCGA | ATCCAATT | TTCGTGACGTC | 8 |
DNA sequence
GAGCAATGATCAGAACCTGTGGATGAGCCTCGGTGGGGCGGCGTGAAAGTGGGCGCACCTTCCCGAGGATGATCTGAAAGTCCAGTAGCTCTGATCAAGA
CCGGCGTTGGCGCGCTGGTTGGGAAGGTACGCCCATGCTCACCGTAGTTCAGGATGCCCGTGAGGCCAACGGCAACGGGGCCGGACGCCGATCGTTGCTC
GATGAAATCGTTCGCGACGGCGCGCGGCAGATGTTGGCGGCGGCATTGCAGGCTGAGGTCGCCGCCTATGTCGAGCAGTTCGCCGATCAACTCGACGAGA
ACGGCCGACGGTTGGTGGTCCGCAACGGCTATCACCACGAACGTGAAGTCCTGACCGCGGCGGGTGCGGTGACGGTGACCGCGCCGCGGGTCAACGACAA
ACGTGTCGATGCCGATACTGGTGAACGGCAGCGGTTTTCCTCGGCGATCCTGCCAGCGTGGGCGCGCAAGTCCCCGCAGATGACCGAGGTGCTGCCGCTG
CTGTACCTGCATGGCCTGTCGACCAGTGACTTCGGCCCAGCTTTGGAGCAGTTCCTGGGCACGGCCGCGGGGCTCTCAGCAACGACGATCACGCGGCTCA
CCAGCCAGTGGCAGGACGAGGCGAAGGCCTTCGGTGATCGTGACCTCTCGGGCACCGATTACGTCTACCTGTGGGTCGACGGCATCCACCTCAAGGTCCG
CCTTGAGCAGGAAAAGCTGTGCCTGCTGGTGATGATCGGGGTGCGTGCCGATGGCCGCAAAGAGCTCGTCGCCCTGGCCGACGGGTATCGAGAGTCGACC
GAGTCGTGGGCGGATCTGCTGCGGTCGTGCCGCCGCCGCGGGATGGCCGCGCCGGTGCTGGCCGTCGGTGATGGCGCGTTGGGGTTCTGGAAGGCGGTCC
GGGAAGTGTTCCCGGCCACCCGGGAGCAGCGGTGCTGGTTCCACAAGCAGGCCAATGTGCTTGCCGCGCTGCCGAAGTCAGCGCACCCTGGGGCATTGGC
GGCGATCAAGGAGATCTACAACGCCGAGGACATCGACAAGGCCCAGGTCGCGATCAAGGCCTTCGCGCTCGACTACGGCGCCAAGTATCCCAAGGCGGTC
GCGAAGATCGTCGACGACGCCGATGTCCTGCTGGAGTTCTACAAATATCCGGCCGAGCATTGGATCCATTTGAGGACGACGAATCCGATCGAGTCGACGT
TCGCCACCGTGCGGTTGCGGACAAAGGTCACCAAGGGCCCAGGATCACGCGCTGCGGGAATTGCCATGGCCTACAAGCTGATCGACGCCGCGCAGGCCCG
CTGGCGGGCCGTGAACGCTCCACACTTGGTCGCCCTCGTCCGTGCCGGCGCGGTGTTCCACAAGGGCAAGCTACTCGAACGGCCCGTCGACATCACACCC
GCCGAGAATGGCGAATCAACCGAAACGGAGGTCGCCTGAAATAACCTCATCCACAGGTCTTGACAATATCTC
CCGGCGTTGGCGCGCTGGTTGGGAAGGTACGCCCATGCTCACCGTAGTTCAGGATGCCCGTGAGGCCAACGGCAACGGGGCCGGACGCCGATCGTTGCTC
GATGAAATCGTTCGCGACGGCGCGCGGCAGATGTTGGCGGCGGCATTGCAGGCTGAGGTCGCCGCCTATGTCGAGCAGTTCGCCGATCAACTCGACGAGA
ACGGCCGACGGTTGGTGGTCCGCAACGGCTATCACCACGAACGTGAAGTCCTGACCGCGGCGGGTGCGGTGACGGTGACCGCGCCGCGGGTCAACGACAA
ACGTGTCGATGCCGATACTGGTGAACGGCAGCGGTTTTCCTCGGCGATCCTGCCAGCGTGGGCGCGCAAGTCCCCGCAGATGACCGAGGTGCTGCCGCTG
CTGTACCTGCATGGCCTGTCGACCAGTGACTTCGGCCCAGCTTTGGAGCAGTTCCTGGGCACGGCCGCGGGGCTCTCAGCAACGACGATCACGCGGCTCA
CCAGCCAGTGGCAGGACGAGGCGAAGGCCTTCGGTGATCGTGACCTCTCGGGCACCGATTACGTCTACCTGTGGGTCGACGGCATCCACCTCAAGGTCCG
CCTTGAGCAGGAAAAGCTGTGCCTGCTGGTGATGATCGGGGTGCGTGCCGATGGCCGCAAAGAGCTCGTCGCCCTGGCCGACGGGTATCGAGAGTCGACC
GAGTCGTGGGCGGATCTGCTGCGGTCGTGCCGCCGCCGCGGGATGGCCGCGCCGGTGCTGGCCGTCGGTGATGGCGCGTTGGGGTTCTGGAAGGCGGTCC
GGGAAGTGTTCCCGGCCACCCGGGAGCAGCGGTGCTGGTTCCACAAGCAGGCCAATGTGCTTGCCGCGCTGCCGAAGTCAGCGCACCCTGGGGCATTGGC
GGCGATCAAGGAGATCTACAACGCCGAGGACATCGACAAGGCCCAGGTCGCGATCAAGGCCTTCGCGCTCGACTACGGCGCCAAGTATCCCAAGGCGGTC
GCGAAGATCGTCGACGACGCCGATGTCCTGCTGGAGTTCTACAAATATCCGGCCGAGCATTGGATCCATTTGAGGACGACGAATCCGATCGAGTCGACGT
TCGCCACCGTGCGGTTGCGGACAAAGGTCACCAAGGGCCCAGGATCACGCGCTGCGGGAATTGCCATGGCCTACAAGCTGATCGACGCCGCGCAGGCCCG
CTGGCGGGCCGTGAACGCTCCACACTTGGTCGCCCTCGTCCGTGCCGGCGCGGTGTTCCACAAGGGCAAGCTACTCGAACGGCCCGTCGACATCACACCC
GCCGAGAATGGCGAATCAACCGAAACGGAGGTCGCCTGAAATAACCTCATCCACAGGTCTTGACAATATCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1305 bp | 434 aa | 135 | 1439 | + | No |
Chemistry : DDE
ORF sequence :
MLTVVQDAREANGNGAGRRSLLDEIVRDGARQMLAAALQAEVAAYVEQFADQLDENGRRLVVRNGYHHEREVLTAAGAVTVTAPRVNDKRVDADTGERQR
FSSAILPAWARKSPQMTEVLPLLYLHGLSTSDFGPALEQFLGTAAGLSATTITRLTSQWQDEAKAFGDRDLSGTDYVYLWVDGIHLKVRLEQEKLCLLVM
IGVRADGRKELVALADGYRESTESWADLLRSCRRRGMAAPVLAVGDGALGFWKAVREVFPATREQRCWFHKQANVLAALPKSAHPGALAAIKEIYNAEDI
DKAQVAIKAFALDYGAKYPKAVAKIVDDADVLLEFYKYPAEHWIHLRTTNPIESTFATVRLRTKVTKGPGSRAAGIAMAYKLIDAAQARWRAVNAPHLVA
LVRAGAVFHKGKLLERPVDITPAENGESTETEVA
FSSAILPAWARKSPQMTEVLPLLYLHGLSTSDFGPALEQFLGTAAGLSATTITRLTSQWQDEAKAFGDRDLSGTDYVYLWVDGIHLKVRLEQEKLCLLVM
IGVRADGRKELVALADGYRESTESWADLLRSCRRRGMAAPVLAVGDGALGFWKAVREVFPATREQRCWFHKQANVLAALPKSAHPGALAAIKEIYNAEDI
DKAQVAIKAFALDYGAKYPKAVAKIVDDADVLLEFYKYPAEHWIHLRTTNPIESTFATVRLRTKVTKGPGSRAAGIAMAYKLIDAAQARWRAVNAPHLVA
LVRAGAVFHKGKLLERPVDITPAENGESTETEVA
Blast result :
Comments
ISMrh1 is 94% aa similar to IS666.
References
1] Romain Guérillot and Philippe Glaser (2013) Direct submission.
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Land,M.L., Hauser,L., Mattes,T., Holmes,A., Rutledge,P., Paulsen,I., Coleman,N. and Woyke,T.J. (2011) Direct submission GenBank.
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Land,M.L., Hauser,L., Mattes,T., Holmes,A., Rutledge,P., Paulsen,I., Coleman,N. and Woyke,T.J. (2011) Direct submission GenBank.