ISOan7
- Family IS256
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_DS990628.1 | ND | Octadecabacter antarcticus | Octadecabacter antarcticus 238 |
DNA section
IS Length : 1387 bp
Ends
IR Length : 23/29
IRL : GAGCTATGACTGAATCTGGTGTTTGAGGGATTTGAAGGTTGGCGGCGTAT
IRR : GAGTTATTGTCAAATCTGGTGTTTGAGGGTTGTCCGTCATGCGGCGATCT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GCAACTTGAT | GGTCGAAG | TCACGCGTGG | 8 |
DNA sequence
GAGCTATGACTGAATCTGGTGTTTGAGGGATTTGAAGGTTGGCGGCGTATCTGGTTGATTTGTTGTTGTGAGACAGCAGCCCAACCAAAGGAGATACACA
ACCATGGGAACTACTAACATTGTTGATTTTGCGCGTCGAGACGGGATGACGGACGCGCTGACGGATTTGTTAAGAACGGGAGCCCAGCAATTGATCGCGA
CAGCAGTCGAGGCAGAGCTTGCCAGTTATCTGGCGCAATTTGCCGACTTGCGCACTGAGACAGGTCACGCAGCTGTGGTACGCAATGGGCATCATCCTGA
GCGCCCATTCCAAACTGGCATTGGCCCTGTGAGCGTGCGCATTCCAAAGGTACGATCCAAGGACGGCCAGCCCATGACATTCCGCTCGGCCCTGGTGCCA
CCCTATGTGCGTCGAACCAAGACGTTGGAAGCTGCCTTGCCATGGCTTTACCTCAAAGGCATTTCCAGCGGTGAGATGGCCCCAGCCCTCAAGGTTCTCC
TGGGCCCTGAGGCCAAGGGATTGTCAGCAAATACGGTCTCGCGCCTCAAGCGTGATTGGGCCAAGGAATACGACGGCTGGAGAGAAGCGGAACTGGACGA
CGAACCAATTGTCTACATCTGGGCGGACGGCGTTCATAGCGGCCTTCGGGGCGAAGATGACAAGCTCTGCGCCCTTGTGATTGTTGGCGTCACAGCCCGT
GGCAAGAAGCGGTTCTTGGCCATTGAGGACGGGGTGCGCGAGTCCACCCAGAGCTGGCGAGAAGTTCTGCTCAGCCTCAAAAGCCGGGGAATGAATGCCC
CAAAATTGGCGATTGGAGACGGTGCCATGGGGTTCTGGGCCGCCATGGATGAAGTCTACCCCACGGCCCGACAGCAGCGGTGCTGGCAACACAAAACGAT
GAACGTGCTCAACTGCCTGCCCAAGCTATCACAGCCAAAGGCCAAAGCGGCGATCCACAACATCTGGCAGGCTGAGACCAAAGATGATGCGGAAAAGGCG
TTCGATTTGTTCATCAAAATATATGAGCCCAAATACCCCAAGGCGACGTTGTGTCTACAAAAGGATCGGACCGAACTCATGGCATTCTTCGACTTCCCCG
CCCAACATTGGCAGAGTATCCGCACCAGCAACCCAATTGAAGCGGCGTTCGCCACGATCCGCCACCGGACCAAGCGTTCAAAAGGCTGCCTATCACGTGA
TGGCATGCTGCACGTGATGTTTAAATTGGGCCAATGCGCCGAGCAAAACTGGCGAAAACTACGCGGCTTTGATTACCTGGCCAAAGTCATCACCGGCGTC
ACATTCAAAGACGGAATCGAAGCCACAAACACAGCCCAGATCGCCGCATGACGGACAACCCTCAAACACCAGATTTGACAATAACTC
ACCATGGGAACTACTAACATTGTTGATTTTGCGCGTCGAGACGGGATGACGGACGCGCTGACGGATTTGTTAAGAACGGGAGCCCAGCAATTGATCGCGA
CAGCAGTCGAGGCAGAGCTTGCCAGTTATCTGGCGCAATTTGCCGACTTGCGCACTGAGACAGGTCACGCAGCTGTGGTACGCAATGGGCATCATCCTGA
GCGCCCATTCCAAACTGGCATTGGCCCTGTGAGCGTGCGCATTCCAAAGGTACGATCCAAGGACGGCCAGCCCATGACATTCCGCTCGGCCCTGGTGCCA
CCCTATGTGCGTCGAACCAAGACGTTGGAAGCTGCCTTGCCATGGCTTTACCTCAAAGGCATTTCCAGCGGTGAGATGGCCCCAGCCCTCAAGGTTCTCC
TGGGCCCTGAGGCCAAGGGATTGTCAGCAAATACGGTCTCGCGCCTCAAGCGTGATTGGGCCAAGGAATACGACGGCTGGAGAGAAGCGGAACTGGACGA
CGAACCAATTGTCTACATCTGGGCGGACGGCGTTCATAGCGGCCTTCGGGGCGAAGATGACAAGCTCTGCGCCCTTGTGATTGTTGGCGTCACAGCCCGT
GGCAAGAAGCGGTTCTTGGCCATTGAGGACGGGGTGCGCGAGTCCACCCAGAGCTGGCGAGAAGTTCTGCTCAGCCTCAAAAGCCGGGGAATGAATGCCC
CAAAATTGGCGATTGGAGACGGTGCCATGGGGTTCTGGGCCGCCATGGATGAAGTCTACCCCACGGCCCGACAGCAGCGGTGCTGGCAACACAAAACGAT
GAACGTGCTCAACTGCCTGCCCAAGCTATCACAGCCAAAGGCCAAAGCGGCGATCCACAACATCTGGCAGGCTGAGACCAAAGATGATGCGGAAAAGGCG
TTCGATTTGTTCATCAAAATATATGAGCCCAAATACCCCAAGGCGACGTTGTGTCTACAAAAGGATCGGACCGAACTCATGGCATTCTTCGACTTCCCCG
CCCAACATTGGCAGAGTATCCGCACCAGCAACCCAATTGAAGCGGCGTTCGCCACGATCCGCCACCGGACCAAGCGTTCAAAAGGCTGCCTATCACGTGA
TGGCATGCTGCACGTGATGTTTAAATTGGGCCAATGCGCCGAGCAAAACTGGCGAAAACTACGCGGCTTTGATTACCTGGCCAAAGTCATCACCGGCGTC
ACATTCAAAGACGGAATCGAAGCCACAAACACAGCCCAGATCGCCGCATGACGGACAACCCTCAAACACCAGATTTGACAATAACTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1284 bp | 427 aa | 69 | 1352 | + | No |
Chemistry : DDE
ORF sequence :
MRQQPNQRRYTTMGTTNIVDFARRDGMTDALTDLLRTGAQQLIATAVEAELASYLAQFADLRTETGHAAVVRNGHHPERPFQTGIGPVSVRIPKVRSKDG
QPMTFRSALVPPYVRRTKTLEAALPWLYLKGISSGEMAPALKVLLGPEAKGLSANTVSRLKRDWAKEYDGWREAELDDEPIVYIWADGVHSGLRGEDDKL
CALVIVGVTARGKKRFLAIEDGVRESTQSWREVLLSLKSRGMNAPKLAIGDGAMGFWAAMDEVYPTARQQRCWQHKTMNVLNCLPKLSQPKAKAAIHNIW
QAETKDDAEKAFDLFIKIYEPKYPKATLCLQKDRTELMAFFDFPAQHWQSIRTSNPIEAAFATIRHRTKRSKGCLSRDGMLHVMFKLGQCAEQNWRKLRG
FDYLAKVITGVTFKDGIEATNTAQIAA
QPMTFRSALVPPYVRRTKTLEAALPWLYLKGISSGEMAPALKVLLGPEAKGLSANTVSRLKRDWAKEYDGWREAELDDEPIVYIWADGVHSGLRGEDDKL
CALVIVGVTARGKKRFLAIEDGVRESTQSWREVLLSLKSRGMNAPKLAIGDGAMGFWAAMDEVYPTARQQRCWQHKTMNVLNCLPKLSQPKAKAAIHNIW
QAETKDDAEKAFDLFIKIYEPKYPKATLCLQKDRTELMAFFDFPAQHWQSIRTSNPIEAAFATIRHRTKRSKGCLSRDGMLHVMFKLGQCAEQNWRKLRG
FDYLAKVITGVTFKDGIEATNTAQIAA
Blast result :
Comments
ISOan7 is 96% aa similar to ISOan5.
References
1] Romain Guérillot and Philippe Glaser (2013) Direct submission.
2] Brinkhoff,T., Wawrik,B., Simon,M., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2008) Direct submission GenBank.
2] Brinkhoff,T., Wawrik,B., Simon,M., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2008) Direct submission GenBank.