ISOan5
- Family IS256
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_DS990574.1 | ND | Octadecabacter antarcticus | Octadecabacter antarcticus 307 |
DNA section
IS Length : 1387 bp
Ends
IR Length : 21/29
IRL : GAGATATGACTGAATCTAGTGTTTGAGTGGTTTGAAGGTTGGCGGCGTAT
IRR : GAGTTATTGTCAAATCTGGTGTTTGAGGGTTGTCGGTCATGCGGCGATCT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TCGCTTGGCT | AGCTGGGAG | CAGACGAAAC | 9 |
| ATTACTCGGT | GCCAGTAGC | CTATGCGCACC | 9 |
| TGGATCAGGG | TTTCATTTA | GGCTGCCAATC | 9 |
DNA sequence
GAGATATGACTGAATCTAGTGTTTGAGTGGTTTGAAGGTTGGCGGCGTATCTGGTTGAATTGTTGTTGGAAGACAGCAGCCCAACCGAAGGAGATACACC
ACCATGGAAACGACTAACATTGTTGATTTTGCGCGTCGAGACGGGATGACGGACGCGCTGACGGAGTTGCTGAAAACGGGAGCACAACAATTGATAGCGA
CAGCAGTTGAGGCCGAGCTTGTCAGTTATCTGGCGCAATTTACCGGCTTACGCACCGATGCCGGTCACGCGGCAGTCGTGCGCAATGGACATCATCCGGC
TCGCCCATTTCAAACGGGCATTGGCCCTGTGAGCGTGCGGATTCCAAAGGTCCGCTCGAAGGATGGCACACCAGTAACATTCCGCTCGGCCCTGGTGCCA
CCCTATGTGCGTAGAACCAAGACCTTGGAAGCTGCCTTGCCGTGGCTTTACCTCAAAGGCATTTCCAGCGGTGAGATGGCCCCAGCCCTCAAGGTTCTCT
TGGGCCCTGATGCCAAGGGATTGTCAGCAAATACGGTTTCGCGTTTAAAACGCGATTGGGCCAATGAATACGAGGCTTGGAAAGACGCTGAGTTAGATGA
TGAGCCAATCGTCTACATCTGGGCTGACGGCGTTCACAGCGGCCTTCGGGGCGAGGATGACAAGCTCTGCGCCCTTGTAATTGTTGGCGTCACAGCCCGT
GGCAAGAAGCGGTTCTTGGCCATTGAGGACGGGGTGCGCGAGTCCACCCAGAGCTGGCGAGAAGTTCTGCTCAGCCTCAAAAGCCAGGGAATGAATGCCC
CAAAATTGGCGATTGGAGACGGTGCCATGGGGTTCTGGGCCGCCATGGATGAAGTCTACCCCACGGCCCGACAGCAGCGGTGCTGGCAACACAAAACGAT
GAACGTGCTCAACTGCCTGCCCAAGCTATCACAGCCAAAGGCCAAAGCGGCGATCCACAACATCTGGCAGGCTGAGACCAAAGATGATGCGGAAAAGGCG
TTCGATTTGTTCATCAAAATCTACGAACCCAAATATCCCAAGGCGGCGCTGTGCCTGCAAAAAGACCGCGAAGAACTCATGGCATTCTTCGACTTCCCCG
CCCAACATTGGCAGAGTATCCGCACCAGCAACCCAATTGAATCGGCCTTCGCCACGATCCGACATCGCACCAAGCGCTCAAAGGGCTGCCTGTCACGCGA
TGGCATGCTGCACATGATGTTCAAGCTGGGACAATGCGCAGAGCAAAACTGGAGGAAGCTACGCGGCTTTGATTACCTGGCCAAAGTCATCACAGGCGTC
AAGTTCAAAGACGGAATTGAAACCACCAACCACAGCCAGATCGCCGCATGACCGACAACCCTCAAACACCAGATTTGACAATAACTC
ACCATGGAAACGACTAACATTGTTGATTTTGCGCGTCGAGACGGGATGACGGACGCGCTGACGGAGTTGCTGAAAACGGGAGCACAACAATTGATAGCGA
CAGCAGTTGAGGCCGAGCTTGTCAGTTATCTGGCGCAATTTACCGGCTTACGCACCGATGCCGGTCACGCGGCAGTCGTGCGCAATGGACATCATCCGGC
TCGCCCATTTCAAACGGGCATTGGCCCTGTGAGCGTGCGGATTCCAAAGGTCCGCTCGAAGGATGGCACACCAGTAACATTCCGCTCGGCCCTGGTGCCA
CCCTATGTGCGTAGAACCAAGACCTTGGAAGCTGCCTTGCCGTGGCTTTACCTCAAAGGCATTTCCAGCGGTGAGATGGCCCCAGCCCTCAAGGTTCTCT
TGGGCCCTGATGCCAAGGGATTGTCAGCAAATACGGTTTCGCGTTTAAAACGCGATTGGGCCAATGAATACGAGGCTTGGAAAGACGCTGAGTTAGATGA
TGAGCCAATCGTCTACATCTGGGCTGACGGCGTTCACAGCGGCCTTCGGGGCGAGGATGACAAGCTCTGCGCCCTTGTAATTGTTGGCGTCACAGCCCGT
GGCAAGAAGCGGTTCTTGGCCATTGAGGACGGGGTGCGCGAGTCCACCCAGAGCTGGCGAGAAGTTCTGCTCAGCCTCAAAAGCCAGGGAATGAATGCCC
CAAAATTGGCGATTGGAGACGGTGCCATGGGGTTCTGGGCCGCCATGGATGAAGTCTACCCCACGGCCCGACAGCAGCGGTGCTGGCAACACAAAACGAT
GAACGTGCTCAACTGCCTGCCCAAGCTATCACAGCCAAAGGCCAAAGCGGCGATCCACAACATCTGGCAGGCTGAGACCAAAGATGATGCGGAAAAGGCG
TTCGATTTGTTCATCAAAATCTACGAACCCAAATATCCCAAGGCGGCGCTGTGCCTGCAAAAAGACCGCGAAGAACTCATGGCATTCTTCGACTTCCCCG
CCCAACATTGGCAGAGTATCCGCACCAGCAACCCAATTGAATCGGCCTTCGCCACGATCCGACATCGCACCAAGCGCTCAAAGGGCTGCCTGTCACGCGA
TGGCATGCTGCACATGATGTTCAAGCTGGGACAATGCGCAGAGCAAAACTGGAGGAAGCTACGCGGCTTTGATTACCTGGCCAAAGTCATCACAGGCGTC
AAGTTCAAAGACGGAATTGAAACCACCAACCACAGCCAGATCGCCGCATGACCGACAACCCTCAAACACCAGATTTGACAATAACTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1248 bp | 415 aa | 104 | 1351 | + | No |
Chemistry : DDE
ORF sequence :
METTNIVDFARRDGMTDALTELLKTGAQQLIATAVEAELVSYLAQFTGLRTDAGHAAVVRNGHHPARPFQTGIGPVSVRIPKVRSKDGTPVTFRSALVPP
YVRRTKTLEAALPWLYLKGISSGEMAPALKVLLGPDAKGLSANTVSRLKRDWANEYEAWKDAELDDEPIVYIWADGVHSGLRGEDDKLCALVIVGVTARG
KKRFLAIEDGVRESTQSWREVLLSLKSQGMNAPKLAIGDGAMGFWAAMDEVYPTARQQRCWQHKTMNVLNCLPKLSQPKAKAAIHNIWQAETKDDAEKAF
DLFIKIYEPKYPKAALCLQKDREELMAFFDFPAQHWQSIRTSNPIESAFATIRHRTKRSKGCLSRDGMLHMMFKLGQCAEQNWRKLRGFDYLAKVITGVK
FKDGIETTNHSQIAA
YVRRTKTLEAALPWLYLKGISSGEMAPALKVLLGPDAKGLSANTVSRLKRDWANEYEAWKDAELDDEPIVYIWADGVHSGLRGEDDKLCALVIVGVTARG
KKRFLAIEDGVRESTQSWREVLLSLKSQGMNAPKLAIGDGAMGFWAAMDEVYPTARQQRCWQHKTMNVLNCLPKLSQPKAKAAIHNIWQAETKDDAEKAF
DLFIKIYEPKYPKAALCLQKDREELMAFFDFPAQHWQSIRTSNPIESAFATIRHRTKRSKGCLSRDGMLHMMFKLGQCAEQNWRKLRGFDYLAKVITGVK
FKDGIETTNHSQIAA
Blast result :
Comments
ISOan5 is 70% aa similar to ISPpa1.
References
1] Romain Guérillot and Philippe Glaser (2013) Direct submission.
2] Brinkhoff,T., Wawrik,B., Simon,M., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2008) Direct GenBank submission.
2] Brinkhoff,T., Wawrik,B., Simon,M., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2008) Direct GenBank submission.