ISOan6
- Family IS256
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_DS990628.1 | ND | Octadecabacter antarcticus | Octadecabacter antarcticus 238 |
DNA section
IS Length : 1387 bp
Ends
IR Length : 22/28
IRL : GAGCTATGACTGAATCTGGTGTTTGAGTGGTTTGAAGGTTGGCGGCGTAT
IRR : GAGTTATTGTCAAATCTGGTGTTTGAGTATTGTTGGTCATGCGGTGATCT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GATCACATGG | CGCGGTTGG | TACGATTTCG | 9 |
| GGATCACATGG | CGCGGTTGG | TACGATTTCGG | 9 |
| TCACCCAATCC | ATTTCCACA | CCTCAGTCAGC | 9 |
| ACAATTGCTGC | CTGCACAGG | CCGATGAAGCC | 9 |
| AAGTGGTGAGG | GCCCGATGG | GCGGGCCGGTT | 9 |
| ATGAAACACTG | CCTGACGAT | CAAGGATTGCC | 9 |
| GCTGGCTTTGCAGAATCTTG | AGAATCATCTTGTTCTAGGC | 0 | |
| GACGATTTCGC | TTTCAAATG | TGGCACTCACA | 9 |
| GTTTGAGTGGTTTGAAGGTT | GCGGCGAGATGGCTCCCGCC | 0 | |
| TCAACACGGGATCAATCCGT | AGACGCTCTCTGTGGTTCTC | 0 | |
| TGTCAGCATTT | CATCATTCG | GACGAGATGCC | 9 |
| TTTCTACATTGGGGTTTGCG | GGGTTTTTTGCGTAAATATC | 0 | |
| AGTAAAAATGCGCTGGGCTT | GCAAGTCTTTCAA GGTGCCG | 0 | |
| AGGAACGACGC | GTCGCAACA | CGCTATGACAG | 9 |
| ACCACTTTGAT | CGGCCTTCC | TGAACTCAAGG | 9 |
| AGGTCATGCGG | TTAGTGTGC | AGAGCCCACAG | 9 |
DNA sequence
GAGCTATGACTGAATCTGGTGTTTGAGTGGTTTGAAGGTTGGCGGCGTATCTGGTTGAATTGTTGTTGGAAGACAGCAGCCCAACCAAAGGAGATACACC
ACCATGGGAACTACTAACATTGTTGATTATGCGCGTCGAGACGAGATGACGGACGCGTTGACGGAGTTGCTGAAAACGGGAGCACAACAATTGATCGCGA
CAGCAGTTGAGGCTGAGCTTGTCAGTTATTTGGCGCAATTTACCGGCTTACGCACCGATGCCGGTCACGCGGCAGTCGTGCGTAATGGACATCATCCGGC
CCGCCCGTTTCAAACGGGCATTGGCCCTGTGAGCGTGCGCATTCCAAAGGTTCGGTCCAAGGACGGCACACCGGTGACATTCCGGTCTGCCCTGGTGCCG
CCCTATGTGCGCCGCACGAAGACGCTGGAAGCGGCCTTGCCATGGCTTTACCTCAAAGGGATCTCCAGCGGCGAGATGGCTCCCGCCCTCAAGGTTCTTC
TGGGCCCAGATGCCGTTGGCTTGTCGGCTAATACGGTTTCGCGTTTAAAACGCGATTGGGCCAATGAATACGAGGCTTGGAAAGGCGCTGAGTTAGATGA
CGAGCCCATCGTCTATATCTGGGCCGACGGCGTTCACAGCGGCCTTCGGGGCGAGGATGACAAGCTCTGTGCCCTTGTTATTATTGGGGTAACTGCCCGT
GGCAAGAAGCGATTTCTGGCAATTGAGGATGGGGTGCGCGAGTCCACGCAGAGCTGGCGCGAGGTTCTGCTTAACCTCAAAAGCCGAGGCATGAATGCGC
CCAAACTGGCCATCGGGGACGGTGCCATGGGGTTTTGGGCGGCCATGGACGAAGTCTATCCTGAGACCCGCCATCAACGCTGTTGGCAACACAAAACGAT
GAACGTGCTCAATTGTTTACCCAAGCTGTCTCAGCCAAAAGCCAAGGCCGCGCTGCACGACATCTGGCAGGCCGAGACCAAAGTCGATGCAGAAAAGGCG
TTCGATCTGTTCATCAAAACCTACGAACCCAAATATCCCAAGGCCACACTATGCCTGCAAAAAGATCGTGAGGAACTCATGGCATTCTTCGACTTCCCGG
CGCAGCATTGGCAAAGCATCCGCACTAGCAATCCAATTGAATCGGCCTTCGCGACGATCCGGCATCGTACCAAGCGTTCAAAGGGCTGCCTGTCACGCGA
TGGCATGCTGCACATGATGTTCAAACTGGGGCAATGTGCTGAGCAAAATTGGAGGAAGCTACGCGGCTTTGACTACCTCGCAAAAGTCATCACAGGCGTC
ACGTTCAAAGACGGAATCGAAACCACAAACCCCGACCAGATCACCGCATGACCAACAATACTCAAACACCAGATTTGACAATAACTC
ACCATGGGAACTACTAACATTGTTGATTATGCGCGTCGAGACGAGATGACGGACGCGTTGACGGAGTTGCTGAAAACGGGAGCACAACAATTGATCGCGA
CAGCAGTTGAGGCTGAGCTTGTCAGTTATTTGGCGCAATTTACCGGCTTACGCACCGATGCCGGTCACGCGGCAGTCGTGCGTAATGGACATCATCCGGC
CCGCCCGTTTCAAACGGGCATTGGCCCTGTGAGCGTGCGCATTCCAAAGGTTCGGTCCAAGGACGGCACACCGGTGACATTCCGGTCTGCCCTGGTGCCG
CCCTATGTGCGCCGCACGAAGACGCTGGAAGCGGCCTTGCCATGGCTTTACCTCAAAGGGATCTCCAGCGGCGAGATGGCTCCCGCCCTCAAGGTTCTTC
TGGGCCCAGATGCCGTTGGCTTGTCGGCTAATACGGTTTCGCGTTTAAAACGCGATTGGGCCAATGAATACGAGGCTTGGAAAGGCGCTGAGTTAGATGA
CGAGCCCATCGTCTATATCTGGGCCGACGGCGTTCACAGCGGCCTTCGGGGCGAGGATGACAAGCTCTGTGCCCTTGTTATTATTGGGGTAACTGCCCGT
GGCAAGAAGCGATTTCTGGCAATTGAGGATGGGGTGCGCGAGTCCACGCAGAGCTGGCGCGAGGTTCTGCTTAACCTCAAAAGCCGAGGCATGAATGCGC
CCAAACTGGCCATCGGGGACGGTGCCATGGGGTTTTGGGCGGCCATGGACGAAGTCTATCCTGAGACCCGCCATCAACGCTGTTGGCAACACAAAACGAT
GAACGTGCTCAATTGTTTACCCAAGCTGTCTCAGCCAAAAGCCAAGGCCGCGCTGCACGACATCTGGCAGGCCGAGACCAAAGTCGATGCAGAAAAGGCG
TTCGATCTGTTCATCAAAACCTACGAACCCAAATATCCCAAGGCCACACTATGCCTGCAAAAAGATCGTGAGGAACTCATGGCATTCTTCGACTTCCCGG
CGCAGCATTGGCAAAGCATCCGCACTAGCAATCCAATTGAATCGGCCTTCGCGACGATCCGGCATCGTACCAAGCGTTCAAAGGGCTGCCTGTCACGCGA
TGGCATGCTGCACATGATGTTCAAACTGGGGCAATGTGCTGAGCAAAATTGGAGGAAGCTACGCGGCTTTGACTACCTCGCAAAAGTCATCACAGGCGTC
ACGTTCAAAGACGGAATCGAAACCACAAACCCCGACCAGATCACCGCATGACCAACAATACTCAAACACCAGATTTGACAATAACTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1248 bp | 415 aa | 104 | 1351 | + | No |
Chemistry : DDE
ORF sequence :
MGTTNIVDYARRDEMTDALTELLKTGAQQLIATAVEAELVSYLAQFTGLRTDAGHAAVVRNGHHPARPFQTGIGPVSVRIPKVRSKDGTPVTFRSALVPP
YVRRTKTLEAALPWLYLKGISSGEMAPALKVLLGPDAVGLSANTVSRLKRDWANEYEAWKGAELDDEPIVYIWADGVHSGLRGEDDKLCALVIIGVTARG
KKRFLAIEDGVRESTQSWREVLLNLKSRGMNAPKLAIGDGAMGFWAAMDEVYPETRHQRCWQHKTMNVLNCLPKLSQPKAKAALHDIWQAETKVDAEKAF
DLFIKTYEPKYPKATLCLQKDREELMAFFDFPAQHWQSIRTSNPIESAFATIRHRTKRSKGCLSRDGMLHMMFKLGQCAEQNWRKLRGFDYLAKVITGVT
FKDGIETTNPDQITA
YVRRTKTLEAALPWLYLKGISSGEMAPALKVLLGPDAVGLSANTVSRLKRDWANEYEAWKGAELDDEPIVYIWADGVHSGLRGEDDKLCALVIIGVTARG
KKRFLAIEDGVRESTQSWREVLLNLKSRGMNAPKLAIGDGAMGFWAAMDEVYPETRHQRCWQHKTMNVLNCLPKLSQPKAKAALHDIWQAETKVDAEKAF
DLFIKTYEPKYPKATLCLQKDREELMAFFDFPAQHWQSIRTSNPIESAFATIRHRTKRSKGCLSRDGMLHMMFKLGQCAEQNWRKLRGFDYLAKVITGVT
FKDGIETTNPDQITA
Blast result :
Comments
ISOan6 is 96% aa similar to ISOan5.
References
1] Romain Guérillot and Philippe Glaser (2013) Direct submission.
2] Brinkhoff,T., Wawrik,B., Simon,M., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2008) Direct submission GenBank.
2] Brinkhoff,T., Wawrik,B., Simon,M., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2008) Direct submission GenBank.