ISMfu1
- Family ISAzo13
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_015711 | ND | Myxococcus fulvus | Myxococcus fulvus HW-1 |
DNA section
IS Length : 1293 bp
Ends
IR Length : 16/21
IRL : GGGCCTGTCCGGATATTAGTTGGCCGAATAGGGGAATGGTCGGGCAACCG
IRR : GGGCCTGATCAGAAATTACTTATCCATACGAGGCTTGAGGATGTAGTTCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTCTGGGACG | TTA | ATGCACGCAGCGAA | 3 |
CGGTGGGACG | TTA | TGCGCGCGGCCCAC | 3 |
CCCGGGGTTA | CTACCGGCTTTGCGTCTT | 0 | |
CCGAGTACGC | CTA | CCGGCTTTGCGTCT | 3 |
DNA sequence
GGGCCTGTCCGGATATTAGTTGGCCGAATAGGGGAATGGTCGGGCAACCGAGCATGTTGGCCGGGTATGGACGCGGAAAAGGCCGTGGCGGAGCGCTACC
AGGCACTCCGGGACGTCATGGATGAGCGGGTGACGCGCCGCTGGGCAGGCGCCGAGGCGCTCGCGCTGGGGCGAGGCGGCGTCACAGCGGTCGCCCGGGC
GACGGGCTTGGCGCGCATGACGGTGCGCGCGGGGCGCGACGAGGTGAGCGGGAAGAGGCCTGAAGGAGAGTTGGTGCGGGTGCGGCGCAAGGGCGCTGGG
CGTCCGCCTGTGGAAGTGGCCCAGCCGGGGCTGACCGAAACCCTGGAGTCGCTGGTGGACCCGGTGACTCGGGGTGACCCGGAGTCGCCGCTGCGCTGGA
CGTGCAAGAGCACGAGGATGCTGGCTTCGGAGTTGGAGAAGCACGGCTACAAAGTGAGCCCCCAGAAGGTGGGCGAGTTGCTCAAGAGCCAGGGCTACAG
CTTGCAGGCAATCTCCAAGTCGTTGGAGGGAGAGTCGCACCCGGACCGCAACGCCCAGTTCGAGCACATCAACGCGCAGGTGCAGCAGTTCCAGGCTCGG
GGGCAGCCCGTCGTTTCGGTGGACACGAAAAAGAAGGAGTTGGTGGGGGAGTTCAAGAATGGAGGCCGTGAATGGCAGCCGGCGGGGGCGCCGGTGCTGA
GCCTGACGCATGACTTCCCAGACACAGCGGTGGGCAAGGCGATTCCCTACGGTGTGTACGACATCGGGGACAACAGCGCCTGGGTGTCGGTGGGGGTGGA
CCACGACACGCCCGTCTTCGCCGTCAACAGTCTCGGCGCGTGGTGGCGAAAAATGGGCCAGGAGCGCTACCCCGAGGCGAAGGAACTCCTGGTGACGGCG
GACTCGGGCGGCAGCAACAGCGCGCGAAGCCGGGTCTGGAAGGCCGAACTGCAGCGGCTGGCGGACGCGACGGGGCTTTGCATCAGCGTCTGTCATTTCC
CGCCCGGCACGAGCAAGTGGAACAAGGTGGAGCATCGCCTCTTCAGCCACATCAGCCTGAATTGGAGAGGCCGCCCACTGGAGGACTACGAGACGGTGGT
GAACCTCATCGGCACCACGACCAACACCAAGGGCTTGAAGGTGAAAGCACGGCTGGACCGACGGCGCTACCGCACAGGAGTCAGCGTCTCTCCGGCGGCC
ATGGACGAACTCCACCTCGTCCGCGCGACCTTCCATGGTGACTGGAACTACATCCTCAAGCCTCGTATGGATAAGTAATTTCTGATCAGGCCC
AGGCACTCCGGGACGTCATGGATGAGCGGGTGACGCGCCGCTGGGCAGGCGCCGAGGCGCTCGCGCTGGGGCGAGGCGGCGTCACAGCGGTCGCCCGGGC
GACGGGCTTGGCGCGCATGACGGTGCGCGCGGGGCGCGACGAGGTGAGCGGGAAGAGGCCTGAAGGAGAGTTGGTGCGGGTGCGGCGCAAGGGCGCTGGG
CGTCCGCCTGTGGAAGTGGCCCAGCCGGGGCTGACCGAAACCCTGGAGTCGCTGGTGGACCCGGTGACTCGGGGTGACCCGGAGTCGCCGCTGCGCTGGA
CGTGCAAGAGCACGAGGATGCTGGCTTCGGAGTTGGAGAAGCACGGCTACAAAGTGAGCCCCCAGAAGGTGGGCGAGTTGCTCAAGAGCCAGGGCTACAG
CTTGCAGGCAATCTCCAAGTCGTTGGAGGGAGAGTCGCACCCGGACCGCAACGCCCAGTTCGAGCACATCAACGCGCAGGTGCAGCAGTTCCAGGCTCGG
GGGCAGCCCGTCGTTTCGGTGGACACGAAAAAGAAGGAGTTGGTGGGGGAGTTCAAGAATGGAGGCCGTGAATGGCAGCCGGCGGGGGCGCCGGTGCTGA
GCCTGACGCATGACTTCCCAGACACAGCGGTGGGCAAGGCGATTCCCTACGGTGTGTACGACATCGGGGACAACAGCGCCTGGGTGTCGGTGGGGGTGGA
CCACGACACGCCCGTCTTCGCCGTCAACAGTCTCGGCGCGTGGTGGCGAAAAATGGGCCAGGAGCGCTACCCCGAGGCGAAGGAACTCCTGGTGACGGCG
GACTCGGGCGGCAGCAACAGCGCGCGAAGCCGGGTCTGGAAGGCCGAACTGCAGCGGCTGGCGGACGCGACGGGGCTTTGCATCAGCGTCTGTCATTTCC
CGCCCGGCACGAGCAAGTGGAACAAGGTGGAGCATCGCCTCTTCAGCCACATCAGCCTGAATTGGAGAGGCCGCCCACTGGAGGACTACGAGACGGTGGT
GAACCTCATCGGCACCACGACCAACACCAAGGGCTTGAAGGTGAAAGCACGGCTGGACCGACGGCGCTACCGCACAGGAGTCAGCGTCTCTCCGGCGGCC
ATGGACGAACTCCACCTCGTCCGCGCGACCTTCCATGGTGACTGGAACTACATCCTCAAGCCTCGTATGGATAAGTAATTTCTGATCAGGCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1212 bp | 403 aa | 67 | 1278 | + | No |
Chemistry : Unknow
ORF sequence :
MDAEKAVAERYQALRDVMDERVTRRWAGAEALALGRGGVTAVARATGLARMTVRAGRDEVSGKRPEGELVRVRRKGAGRPPVEVAQPGLTETLESLVDPV
TRGDPESPLRWTCKSTRMLASELEKHGYKVSPQKVGELLKSQGYSLQAISKSLEGESHPDRNAQFEHINAQVQQFQARGQPVVSVDTKKKELVGEFKNGG
REWQPAGAPVLSLTHDFPDTAVGKAIPYGVYDIGDNSAWVSVGVDHDTPVFAVNSLGAWWRKMGQERYPEAKELLVTADSGGSNSARSRVWKAELQRLAD
ATGLCISVCHFPPGTSKWNKVEHRLFSHISLNWRGRPLEDYETVVNLIGTTTNTKGLKVKARLDRRRYRTGVSVSPAAMDELHLVRATFHGDWNYILKPR
MDK
TRGDPESPLRWTCKSTRMLASELEKHGYKVSPQKVGELLKSQGYSLQAISKSLEGESHPDRNAQFEHINAQVQQFQARGQPVVSVDTKKKELVGEFKNGG
REWQPAGAPVLSLTHDFPDTAVGKAIPYGVYDIGDNSAWVSVGVDHDTPVFAVNSLGAWWRKMGQERYPEAKELLVTADSGGSNSARSRVWKAELQRLAD
ATGLCISVCHFPPGTSKWNKVEHRLFSHISLNWRGRPLEDYETVVNLIGTTTNTKGLKVKARLDRRRYRTGVSVSPAAMDELHLVRATFHGDWNYILKPR
MDK
Blast result :
Comments
ISMfu1 is 86% aa similar to ISStau6.
References
1] ISfinder submission (2012)
2] Li,Z.F., Li,X., Liu,H., Liu,X., Han,K., Wu,Z.H., Hu,W., Li,F.F. and Li,Y.Z. (2011) J. Bacteriol. 193 (18), 5015-5016
2] Li,Z.F., Li,X., Liu,H., Liu,X., Han,K., Wu,Z.H., Hu,W., Li,F.F. and Li,Y.Z. (2011) J. Bacteriol. 193 (18), 5015-5016