ISMco2
- Family IS200/IS605
- Group IS200
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_015416 | ND | Methanosaeta concilii | Methanosaeta concilii GP6 |
DNA section
IS Length : 589 bp
Ends
Left end : ATTTTTAAATGAATACCCCGCAGCTTGCTGCGGTTGGGATGGTCAGGAAACCGACTTAAGGAAAGGGGCATATTCTATGTTAGATGATTGAGGTTAAAAA II struct. : Yes
Right end : AAGAAAAGGAAGCATATAAGCAAATGAACTTGTTAGATTTCGAATGACGGCAAACGGCGCGAACATGCCCCGCTGCTTGCAGCGGGGTGCGCTGTTTGAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TTTAAGCATTTTAGTA | TTTT | TGAATCCTGGA | TGAC |
TCCCTTTCCCCGCATA | TTTT | TATAAAAACAG | TGAC |
DNA sequence
ATTTTTAAATGAATACCCCGCAGCTTGCTGCGGTTGGGATGGTCAGGAAACCGACTTAAGGAAAGGGGCATATTCTATGTTAGATGATTGAGGTTAAAAA
AGCAAGCCATTGTGCCTACAAAATTCGATATCATATGGTATTTAGTATAAAATATAGAAGAAAATTGCTTCAGGATATCGATCGCATTAATTATATCAAA
TTCGTATGCAGTGAGATCGGTGAACGATACTATTTCGATTTCGATGCAATTGGTACTGATGGCGATCATGTTCATATCTTTGTTGGAGCAGCGCCAAGAT
ATTCGCCATCAAAGGTTATGCAAATTGTAAAAAGTATAACCGCAAGAGAGTTTTTTAAGAAGTATCCTGAAGTGAAAAAACAGCTTTGGGGTGGCGAATT
TTGGAGCGATGGAGGTTATGTTGGAACAGTAGGTGATGGTGTTATGGCCGACACTATACGGAATTACGTTGAAACTCAAGGATCGCCTGAAGAAAAGGAA
GCATATAAGCAAATGAACTTGTTAGATTTCGAATGACGGCAAACGGCGCGAACATGCCCCGCTGCTTGCAGCGGGGTGCGCTGTTTGAC
AGCAAGCCATTGTGCCTACAAAATTCGATATCATATGGTATTTAGTATAAAATATAGAAGAAAATTGCTTCAGGATATCGATCGCATTAATTATATCAAA
TTCGTATGCAGTGAGATCGGTGAACGATACTATTTCGATTTCGATGCAATTGGTACTGATGGCGATCATGTTCATATCTTTGTTGGAGCAGCGCCAAGAT
ATTCGCCATCAAAGGTTATGCAAATTGTAAAAAGTATAACCGCAAGAGAGTTTTTTAAGAAGTATCCTGAAGTGAAAAAACAGCTTTGGGGTGGCGAATT
TTGGAGCGATGGAGGTTATGTTGGAACAGTAGGTGATGGTGTTATGGCCGACACTATACGGAATTACGTTGAAACTCAAGGATCGCCTGAAGAAAAGGAA
GCATATAAGCAAATGAACTTGTTAGATTTCGAATGACGGCAAACGGCGCGAACATGCCCCGCTGCTTGCAGCGGGGTGCGCTGTTTGAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
453 bp | 150 aa | 84 | 536 | + | No |
Chemistry : Y1
ORF sequence :
MIEVKKASHCAYKIRYHMVFSIKYRRKLLQDIDRINYIKFVCSEIGERYYFDFDAIGTDGDHVHIFVGAAPRYSPSKVMQIVKSITAREFFKKYPEVKKQ
LWGGEFWSDGGYVGTVGDGVMADTIRNYVETQGSPEEKEAYKQMNLLDFE
LWGGEFWSDGGYVGTVGDGVMADTIRNYVETQGSPEEKEAYKQMNLLDFE
Blast result :
Comments
ISMco2 is 85% aa similar to ISMba18.
References
1] ISfinder annotation (20121)
2] Barber,R.D., Zhang,L., Harnack,M., Olson,M.V., Kaul,R., Ingram-Smith,C. and Smith,K.S. (2011) J. Bacteriol. 193 (14), 3668-3669.
2] Barber,R.D., Zhang,L., Harnack,M., Olson,M.V., Kaul,R., Ingram-Smith,C. and Smith,K.S. (2011) J. Bacteriol. 193 (14), 3668-3669.