ISMmu1
- Family IS200/IS605
- Group IS605
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_GG697141 | ND | Mitsuokella multacida | Mitsuokella multacida DSM 20544 |
DNA section
IS Length : 2023 bp
Ends
Left end : CAATTAAAATGCGGCCAGGAATCTTCTCACTTCAGTCAGGAGAGGAATGGCCGCAACGGTAGTCACTTGGAATACTGGTTCTGAATGTATTTTGCGACTA II struct. : Yes
Right end : ACCTCGCAAGACTGCGAATGCAGTAAGCCTGGCCTATCTAAGCAAATTGAGGTATCGAAAGATTCCCTCAAGCTCGCGACTTCAGTCGCGGGTAGTTGAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TCCATAGATTCTG | TTCT | AAAGAGGCCC | TGAC |
GAATCCTTCTAGG | TTTT | TCTTATCAGG | TGAC |
DNA sequence
CAATTAAAATGCGGCCAGGAATCTTCTCACTTCAGTCAGGAGAGGAATGGCCGCAACGGTAGTCACTTGGAATACTGGTTCTGAATGTATTTTGCGACTA
CTTCCTTGCTCATGTTGCCAAGTGTGCTCATATAGTAGCTGCGTGACCAGATATGACCACCCCAGAATTTATCATGCTTGATCTCGGGATGTTTTTTTAG
GAACAGTCTGGCACTGCCGCCTTTGAGTGCCTTGACGATGTTTGTCGGCGTATACTTTGGCTTGAAGCTGATGAGCATGTGCACATGCTCTGGCATGACT
TCCAGCTCTTCGACGGTCACATCGTTCAGCTGCGCGATGCGCAGCAAGATATCCTTCATCTCCTGCACGAGCTCCGGTGTCGTGAAGGCTGGGTTCCGAT
ACTTCGTCACCCAGATCAGATGAAAGTGGAAATTGTAGACGTATCCACGCTCATAGATTGCACCTGGGATGCGCTCTTTTCGTTTCATGTGTATCACACT
CCTTTCTTTTTTATTATAGCGATATATTGCTTGTTAGGCAATCTCATATGCTGTATAATAGAAGTAGGAAGGAGGCGAATAAAATGGAACATAAGAAGAT
GGCGGATTATGCCTATCATTACGGTCTGAAAGTCCGCATCTACCCCAGCCGGCAACAGAAAGAGATGATTCGACGCAATGCGGATGCGGCACGCTGCATC
TACAATGAACATGTCGCTGTGAACAAGGAGATCGCACGATTCGGCAGACGGAGCATCTACATCGACTTCATTGAGAAGCGCATCGAGGCACTGCGCGAGC
GAATCCGCACGGTAACAGCATTGAAAGACCGCTATCCATGGCTCCGGCATCCCGATATCGATGCGCAGTCCATTGCCAATGCACGGCAGAACTACCAGCA
TGCTTGGAAGCAGTTCCGTGCCGTCCATCATGCTGGTGTGCCGAACTTCCACAAGAAAACGTCCGTCGAGTCGTATCAGACGAATCCGCATTACAGCAAG
GGTACGGTGATTTCGCTGTTTACCAGTAACGCCCGCTTCCTCGACAAGCATCATCTGATGCTGCCCAAGCTCAAACGCATCCGCTTCCAAGGTTCGCGTA
AAATACTGGACCGACTTTTTGCCATGAAGGAAGTCCGCATCGGAACGATTACCATCACGAAAGACAGCCTGCACCGCTACTTTGCGTCATTCCAACTCGG
CTCCGATGAACCATTCGTGAAAGCCAGCCCGAAAACAAAGGCAGAGATTGGCATCGACCTGAACATCGAGAACTTCTATGCCGACTCGAATGGCGAGATT
GTGGCCAATCCTCGTTATTACCGCAGGCAGAAACGACGGCTGGCCAACGCACAGCGCAAGCTGAGCCGTCGGATTGTCCGTGCCAAGAAAGAGCATCGCT
CGCTCCGTGAGGCAAAGAACGTCGAAAAACAGCGCTTGCTCGTCGCCAGGCTCACGGCACAAGTCATGCAGCGCCGCAAAGATTTCCTGCACCGCACTTC
CGCGACACTGATCAAGAACCACGATCTGGTCGCAGCAGAAGAACTACGGAGCAAGAATCTGCTGAAGAACCATGCCCTGGCTATGAGCATCCAAGACAAT
GGCTGGCGGATGTTCCTTAGTATGCTGACTTATAAGGCAGCACTGTACGGCAAGAACTTCGTCACCGTCGACCCGCGGAATACGACGCAAACCTGCCACG
CTTGTGGCCATATCATGAGCGGTAAAGAGAAACTGACGCTCAAGGACCGCGAGTGGATCTGCCCGAAATGTGGGATACACCACCTTCGCGATGTGAATGC
GGCCAAGAACATCCTAGCGCGAGCCAAAGCAAAGCTCGTATCCATGCATTGATGCGAACCTACCTTGTCCGTTTGGCAACTTGCGGACGCTAATGGCTTT
GGTAATTACCGGACCTCTGCTGTACCTCGCAAGACTGCGAATGCAGTAAGCCTGGCCTATCTAAGCAAATTGAGGTATCGAAAGATTCCCTCAAGCTCGC
GACTTCAGTCGCGGGTAGTTGAC
CTTCCTTGCTCATGTTGCCAAGTGTGCTCATATAGTAGCTGCGTGACCAGATATGACCACCCCAGAATTTATCATGCTTGATCTCGGGATGTTTTTTTAG
GAACAGTCTGGCACTGCCGCCTTTGAGTGCCTTGACGATGTTTGTCGGCGTATACTTTGGCTTGAAGCTGATGAGCATGTGCACATGCTCTGGCATGACT
TCCAGCTCTTCGACGGTCACATCGTTCAGCTGCGCGATGCGCAGCAAGATATCCTTCATCTCCTGCACGAGCTCCGGTGTCGTGAAGGCTGGGTTCCGAT
ACTTCGTCACCCAGATCAGATGAAAGTGGAAATTGTAGACGTATCCACGCTCATAGATTGCACCTGGGATGCGCTCTTTTCGTTTCATGTGTATCACACT
CCTTTCTTTTTTATTATAGCGATATATTGCTTGTTAGGCAATCTCATATGCTGTATAATAGAAGTAGGAAGGAGGCGAATAAAATGGAACATAAGAAGAT
GGCGGATTATGCCTATCATTACGGTCTGAAAGTCCGCATCTACCCCAGCCGGCAACAGAAAGAGATGATTCGACGCAATGCGGATGCGGCACGCTGCATC
TACAATGAACATGTCGCTGTGAACAAGGAGATCGCACGATTCGGCAGACGGAGCATCTACATCGACTTCATTGAGAAGCGCATCGAGGCACTGCGCGAGC
GAATCCGCACGGTAACAGCATTGAAAGACCGCTATCCATGGCTCCGGCATCCCGATATCGATGCGCAGTCCATTGCCAATGCACGGCAGAACTACCAGCA
TGCTTGGAAGCAGTTCCGTGCCGTCCATCATGCTGGTGTGCCGAACTTCCACAAGAAAACGTCCGTCGAGTCGTATCAGACGAATCCGCATTACAGCAAG
GGTACGGTGATTTCGCTGTTTACCAGTAACGCCCGCTTCCTCGACAAGCATCATCTGATGCTGCCCAAGCTCAAACGCATCCGCTTCCAAGGTTCGCGTA
AAATACTGGACCGACTTTTTGCCATGAAGGAAGTCCGCATCGGAACGATTACCATCACGAAAGACAGCCTGCACCGCTACTTTGCGTCATTCCAACTCGG
CTCCGATGAACCATTCGTGAAAGCCAGCCCGAAAACAAAGGCAGAGATTGGCATCGACCTGAACATCGAGAACTTCTATGCCGACTCGAATGGCGAGATT
GTGGCCAATCCTCGTTATTACCGCAGGCAGAAACGACGGCTGGCCAACGCACAGCGCAAGCTGAGCCGTCGGATTGTCCGTGCCAAGAAAGAGCATCGCT
CGCTCCGTGAGGCAAAGAACGTCGAAAAACAGCGCTTGCTCGTCGCCAGGCTCACGGCACAAGTCATGCAGCGCCGCAAAGATTTCCTGCACCGCACTTC
CGCGACACTGATCAAGAACCACGATCTGGTCGCAGCAGAAGAACTACGGAGCAAGAATCTGCTGAAGAACCATGCCCTGGCTATGAGCATCCAAGACAAT
GGCTGGCGGATGTTCCTTAGTATGCTGACTTATAAGGCAGCACTGTACGGCAAGAACTTCGTCACCGTCGACCCGCGGAATACGACGCAAACCTGCCACG
CTTGTGGCCATATCATGAGCGGTAAAGAGAAACTGACGCTCAAGGACCGCGAGTGGATCTGCCCGAAATGTGGGATACACCACCTTCGCGATGTGAATGC
GGCCAAGAACATCCTAGCGCGAGCCAAAGCAAAGCTCGTATCCATGCATTGATGCGAACCTACCTTGTCCGTTTGGCAACTTGCGGACGCTAATGGCTTT
GGTAATTACCGGACCTCTGCTGTACCTCGCAAGACTGCGAATGCAGTAAGCCTGGCCTATCTAAGCAAATTGAGGTATCGAAAGATTCCCTCAAGCTCGC
GACTTCAGTCGCGGGTAGTTGAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
426 bp | 141 aa | 488 | 63 | - | No |
Chemistry : Y1
ORF sequence :
MKRKERIPGAIYERGYVYNFHFHLIWVTKYRNPAFTTPELVQEMKDILLRIAQLNDVTVEELEVMPEHVHMLISFKPKYTPTNIVKALKGGSARLFLKKH
PEIKHDKFWGGHIWSRSYYMSTLGNMSKEVVAKYIQNQYSK
PEIKHDKFWGGHIWSRSYYMSTLGNMSKEVVAKYIQNQYSK
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1305 bp | 434 aa | 548 | 1852 | + | No |
AG : TnpB
ORF sequence :
MLYNRSRKEANKMEHKKMADYAYHYGLKVRIYPSRQQKEMIRRNADAARCIYNEHVAVNKEIARFGRRSIYIDFIEKRIEALRERIRTVTALKDRYPWLR
HPDIDAQSIANARQNYQHAWKQFRAVHHAGVPNFHKKTSVESYQTNPHYSKGTVISLFTSNARFLDKHHLMLPKLKRIRFQGSRKILDRLFAMKEVRIGT
ITITKDSLHRYFASFQLGSDEPFVKASPKTKAEIGIDLNIENFYADSNGEIVANPRYYRRQKRRLANAQRKLSRRIVRAKKEHRSLREAKNVEKQRLLVA
RLTAQVMQRRKDFLHRTSATLIKNHDLVAAEELRSKNLLKNHALAMSIQDNGWRMFLSMLTYKAALYGKNFVTVDPRNTTQTCHACGHIMSGKEKLTLKD
REWICPKCGIHHLRDVNAAKNILARAKAKLVSMH
HPDIDAQSIANARQNYQHAWKQFRAVHHAGVPNFHKKTSVESYQTNPHYSKGTVISLFTSNARFLDKHHLMLPKLKRIRFQGSRKILDRLFAMKEVRIGT
ITITKDSLHRYFASFQLGSDEPFVKASPKTKAEIGIDLNIENFYADSNGEIVANPRYYRRQKRRLANAQRKLSRRIVRAKKEHRSLREAKNVEKQRLLVA
RLTAQVMQRRKDFLHRTSATLIKNHDLVAAEELRSKNLLKNHALAMSIQDNGWRMFLSMLTYKAALYGKNFVTVDPRNTTQTCHACGHIMSGKEKLTLKD
REWICPKCGIHHLRDVNAAKNILARAKAKLVSMH
Blast result :
Comments
ISMmu1 is 79% (TnpA : the transposase) aa and 67% (ORFB) aa similar to ISLjo5.
References
1] ISfinder annotation (2012)
2] Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B., Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C., Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C., Mitreva,M., Nelson,J., Hou,S., Wollam,A., Pepin,K.H., Johnson,M., Bhonagiri,V., Nash,W.E., Warren,W., Chinwalla,A., Mardis,E.R. and Wilson,R.K. (2008) Direct submission GenBank.
2] Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B., Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C., Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C., Mitreva,M., Nelson,J., Hou,S., Wollam,A., Pepin,K.H., Johnson,M., Bhonagiri,V., Nash,W.E., Warren,W., Chinwalla,A., Mardis,E.R. and Wilson,R.K. (2008) Direct submission GenBank.