ISMem1
- Family IS5
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_014002 | ND | Methanohalophilus mahii | Methanohalophilus mahii DSM 5219 |
DNA section
IS Length : 1004 bp
Ends
IR Length : 16/17
IRL : GGCTCTGTAGAAACCCTTTCCTCTAACTTCCACTAATACATTATTATTTT
IRR : GGCTCTGTAGAAATCCTCATTTGAATAATTATTGAAACAGAGATAGCCCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTACGATTTT | CATTTATA | ACACTCCCAA | 8 |
TAACATGTAT | TATGTTTG | TACTATTTAT | 8 |
AAAAATACTG | AAAATTAA | ATAATTTTAT | 8 |
DNA sequence
GGCTCTGTAGAAACCCTTTCCTCTAACTTCCACTAATACATTATTATTTTTATAAGAAGAGGTCCCCAATGTGATTTTGACCATAAAAAACACAAAGGGG
ATGAATGTGTTTTGTCAAGCGATTACTTAAACTTTATCGATACAGCTATGTCTGTAGCTGGAAGATCTCATCTTCCAATCTACAGTTGTAAGTATTCCAA
ACGAAAATATACTCAGCATCAGTTATTGACTTTGGTATTGGTCAAAGAGTACACAGGTAAGAACTATAGAGATGTTGTTAGACTTGTTGAGTTAATGGAT
AGAGTTCAGTCCAAGATTGGTATAAAACACGTACCTCACTTCACAACATTACATAAATTTACCAATAGAATATCTTCTTTCTATTTCAATAGCTTACTTC
ACCAAACTCTGAAACTATTCTATTCACATGGTGAAAAAATACCTCTGATTGCTATTGATTCAAGTGGATTTACAGGTGGACATTGTAGTTACTATTATTC
TGTGAGAACAGGAAAGAAAAGACGGTCGTATCTGAAAACAAGTATAGCTGTTGACGTTGAGAAGTTCATTGTAACTGGTTTTAAGATTTCAGGTAAGCCT
GTGCATGATGCAAAGCATGCATTGACATTGCTTAGACAATGTCACAAAAGGAGAAAAGCTGATTGTTATCTGATGGATAAAGGATATGATTCTGAGAAGA
TACATGCTCTAATCAATGAAGAATTGAAAGCAGAAGCCATCATACCTGTAAGATGTAGAAAAAGGAAGAAGATCAAAGGAAAATATCGTCGAAAAATGAG
AGATGAGTTTGATGAAGACATCTATCATTATAGAAACCTGGTAGAGACGATGTTTTCTGTTTTGAAAAGGAAGTATAGGGAAGAACTGAGGGCAACAAAA
TACAGAAATCAGGTCAAAGAGGTCAAGTTCAAATTATTAATTCATAATATAGATAGGGCTATCTCTGTTTCAATAATTATTCAAATGAGGATTTCTACAG
AGCC
ATGAATGTGTTTTGTCAAGCGATTACTTAAACTTTATCGATACAGCTATGTCTGTAGCTGGAAGATCTCATCTTCCAATCTACAGTTGTAAGTATTCCAA
ACGAAAATATACTCAGCATCAGTTATTGACTTTGGTATTGGTCAAAGAGTACACAGGTAAGAACTATAGAGATGTTGTTAGACTTGTTGAGTTAATGGAT
AGAGTTCAGTCCAAGATTGGTATAAAACACGTACCTCACTTCACAACATTACATAAATTTACCAATAGAATATCTTCTTTCTATTTCAATAGCTTACTTC
ACCAAACTCTGAAACTATTCTATTCACATGGTGAAAAAATACCTCTGATTGCTATTGATTCAAGTGGATTTACAGGTGGACATTGTAGTTACTATTATTC
TGTGAGAACAGGAAAGAAAAGACGGTCGTATCTGAAAACAAGTATAGCTGTTGACGTTGAGAAGTTCATTGTAACTGGTTTTAAGATTTCAGGTAAGCCT
GTGCATGATGCAAAGCATGCATTGACATTGCTTAGACAATGTCACAAAAGGAGAAAAGCTGATTGTTATCTGATGGATAAAGGATATGATTCTGAGAAGA
TACATGCTCTAATCAATGAAGAATTGAAAGCAGAAGCCATCATACCTGTAAGATGTAGAAAAAGGAAGAAGATCAAAGGAAAATATCGTCGAAAAATGAG
AGATGAGTTTGATGAAGACATCTATCATTATAGAAACCTGGTAGAGACGATGTTTTCTGTTTTGAAAAGGAAGTATAGGGAAGAACTGAGGGCAACAAAA
TACAGAAATCAGGTCAAAGAGGTCAAGTTCAAATTATTAATTCATAATATAGATAGGGCTATCTCTGTTTCAATAATTATTCAAATGAGGATTTCTACAG
AGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
897 bp | 298 aa | 108 | 1004 | + | No |
Chemistry : DDE
ORF sequence :
VLSSDYLNFIDTAMSVAGRSHLPIYSCKYSKRKYTQHQLLTLVLVKEYTGKNYRDVVRLVELMDRVQSKIGIKHVPHFTTLHKFTNRISSFYFNSLLHQT
LKLFYSHGEKIPLIAIDSSGFTGGHCSYYYSVRTGKKRRSYLKTSIAVDVEKFIVTGFKISGKPVHDAKHALTLLRQCHKRRKADCYLMDKGYDSEKIHA
LINEELKAEAIIPVRCRKRKKIKGKYRRKMRDEFDEDIYHYRNLVETMFSVLKRKYREELRATKYRNQVKEVKFKLLIHNIDRAISVSIIIQMRISTE
LKLFYSHGEKIPLIAIDSSGFTGGHCSYYYSVRTGKKRRSYLKTSIAVDVEKFIVTGFKISGKPVHDAKHALTLLRQCHKRRKADCYLMDKGYDSEKIHA
LINEELKAEAIIPVRCRKRKKIKGKYRRKMRDEFDEDIYHYRNLVETMFSVLKRKYREELRATKYRNQVKEVKFKLLIHNIDRAISVSIIIQMRISTE
Blast result :
Comments
ISMem1 is 77% aa similar to ISMbu10. There is nos STOP codon inside the element, the transposase use the first after the end of the IS.
References
1] ISfinder annotation (2010)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Lykidis,A., Saunders,E., Brettin,T., Detter,J.C., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Schneider,S., Schroeder,M., Klenk,H.-P. and Eisen,J.A. (2010) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Lykidis,A., Saunders,E., Brettin,T., Detter,J.C., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Schneider,S., Schroeder,M., Klenk,H.-P. and Eisen,J.A. (2010) Direct submission GenBank.