ISOan4
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_DS990574 | ND | Octadecabacter antarcticus | Octadecabacter antarcticus 307 |
DNA section
IS Length : 1052 bp
Ends
IR Length : 20/22
IRL : GGCTTTGTTGCACAAATCGCGTCACGAGGATTCACTGTATGAATCCAGCG
IRR : GGCTTTGTTGCACAAATCGGGTTGAGGTCGTACTTCCCCTAAAACCGGAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACTTTTTATA | CATTGGCGT | GCAAGAAAAT | 9 |
ATTATTTTGTTGTGGAGTAT | CCTATTCTGTTGAAAAAC | 0 | |
TTGCGTTTGGCCAGCGACAC | CAGCAACTATCGAGATCC | 0 |
DNA sequence
GGCTTTGTTGCACAAATCGCGTCACGAGGATTCACTGTATGAATCCAGCGTGATAGCTGGCGGTTATGAGCAGCTGGATACCTACAAAGTATAAGACCCG
GAACTGGGCTGAGTACAATTTTTCACTGAAGATGCGGGGATCGCTTTCGATCTGGTTTGACGCGGGGATGACGTGGGAGGCTGTGCCTTCAGGGCGGCGG
GGACGCCAACAAGCCTACAGCGATGCGGCGATACAAGCCTGCCTGACCCTCAAAGTGCTGTTCGGTTTGCCGTTGAGGCAGACGGCTGGATTTGTAGAAA
GCCTTCTCAAGCTTGCCGGTCTGAACTGGTCAGTGCCGGATTTCAGTACCTTATGTCGCCGTCAGAGGACGTTATCGGTGGCCATCCCGTACAAGGGCTC
AACCGGACCACTGCACCTGCTGATAGATAGTACAGGCATCAAGGCTGAGGGCGAAGGAGAATGGAACGCACGCAAGCACGGTGGACCCAAACGGCGGTTG
TGGCGCAAGATACATATTGGGATTGATGAACAAACGCTGGAAATACGGGCCGTCGAGGTCACTAACAGCAGCATCGGGGACGCGCCCATGTTGCCTGACC
TGCTCAATCAGATCCCCGCTGATCAGGAACTCGGTAGCGTCACAGCCGACGGGGCATACGACACCCGCAAATGCTACGATGCGATTGCCGCGCGAAATGC
CCACGCCGTCATACCGCCGCGCAAGAATGCCAAGTTATGGAAGCACGACACACCCGGGGCCAGAGCGCGCAACGAAGCAGTGCGAGCCTCAAAGTATCTA
GGCTCCGCGTTGTGGCGACAGGTGACCGGATATCACCGCAGAAGCCGCGTTGAGACAAAGATGCATTGTGTGAAATTACTGGGTCAGCGCCTCTCAGCGC
GTGACTTTGATCGGCAGGTTGCGGAGATCCAAATCCGTGCTGCGATCCTAAACGGCTTCACAGCGCTTGGCATCCCCAAGACAGAGGCCGTAGGCTAAAT
CCGTCCGGTTTTAGGGGAAGTACGACCTCAACCCGATTTGTGCAACAAAGCC
GAACTGGGCTGAGTACAATTTTTCACTGAAGATGCGGGGATCGCTTTCGATCTGGTTTGACGCGGGGATGACGTGGGAGGCTGTGCCTTCAGGGCGGCGG
GGACGCCAACAAGCCTACAGCGATGCGGCGATACAAGCCTGCCTGACCCTCAAAGTGCTGTTCGGTTTGCCGTTGAGGCAGACGGCTGGATTTGTAGAAA
GCCTTCTCAAGCTTGCCGGTCTGAACTGGTCAGTGCCGGATTTCAGTACCTTATGTCGCCGTCAGAGGACGTTATCGGTGGCCATCCCGTACAAGGGCTC
AACCGGACCACTGCACCTGCTGATAGATAGTACAGGCATCAAGGCTGAGGGCGAAGGAGAATGGAACGCACGCAAGCACGGTGGACCCAAACGGCGGTTG
TGGCGCAAGATACATATTGGGATTGATGAACAAACGCTGGAAATACGGGCCGTCGAGGTCACTAACAGCAGCATCGGGGACGCGCCCATGTTGCCTGACC
TGCTCAATCAGATCCCCGCTGATCAGGAACTCGGTAGCGTCACAGCCGACGGGGCATACGACACCCGCAAATGCTACGATGCGATTGCCGCGCGAAATGC
CCACGCCGTCATACCGCCGCGCAAGAATGCCAAGTTATGGAAGCACGACACACCCGGGGCCAGAGCGCGCAACGAAGCAGTGCGAGCCTCAAAGTATCTA
GGCTCCGCGTTGTGGCGACAGGTGACCGGATATCACCGCAGAAGCCGCGTTGAGACAAAGATGCATTGTGTGAAATTACTGGGTCAGCGCCTCTCAGCGC
GTGACTTTGATCGGCAGGTTGCGGAGATCCAAATCCGTGCTGCGATCCTAAACGGCTTCACAGCGCTTGGCATCCCCAAGACAGAGGCCGTAGGCTAAAT
CCGTCCGGTTTTAGGGGAAGTACGACCTCAACCCGATTTGTGCAACAAAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
933 bp | 310 aa | 66 | 998 | + | No |
Chemistry : DDE
ORF sequence :
MSSWIPTKYKTRNWAEYNFSLKMRGSLSIWFDAGMTWEAVPSGRRGRQQAYSDAAIQACLTLKVLFGLPLRQTAGFVESLLKLAGLNWSVPDFSTLCRRQ
RTLSVAIPYKGSTGPLHLLIDSTGIKAEGEGEWNARKHGGPKRRLWRKIHIGIDEQTLEIRAVEVTNSSIGDAPMLPDLLNQIPADQELGSVTADGAYDT
RKCYDAIAARNAHAVIPPRKNAKLWKHDTPGARARNEAVRASKYLGSALWRQVTGYHRRSRVETKMHCVKLLGQRLSARDFDRQVAEIQIRAAILNGFTA
LGIPKTEAVG
RTLSVAIPYKGSTGPLHLLIDSTGIKAEGEGEWNARKHGGPKRRLWRKIHIGIDEQTLEIRAVEVTNSSIGDAPMLPDLLNQIPADQELGSVTADGAYDT
RKCYDAIAARNAHAVIPPRKNAKLWKHDTPGARARNEAVRASKYLGSALWRQVTGYHRRSRVETKMHCVKLLGQRLSARDFDRQVAEIQIRAAILNGFTA
LGIPKTEAVG
Blast result :
Comments
ISOan4 is 88% aa similar to ISPlc1.
References
1] ISfinder annotation (2010)
2] Brinkhoff,T., Wawrik,B., Simon,M., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2008) Direct submission GenBank.
2] Brinkhoff,T., Wawrik,B., Simon,M., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2008) Direct submission GenBank.