ISMau1
- Family IS5
- Group ISL2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ADBZ01000055 | ND | Micromonospora aurantiaca | Micromonospora aurantiaca ATCC 27029 |
DNA section
IS Length : 914 bp
Ends
IR Length : 14/17
IRL : GAGCCATTTTCATCGTGATGGTGCAGGTCACGGGTGGCGGGTGAGGCCCG
IRR : GAGCAGTTTCATCCTGCGTGACGCTTGGCTTCGACGTGGTGAAGGACGAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCGGATTATT | ACTGTCGCGA | 0 |
DNA sequence
GAGCCATTTTCATCGTGATGGTGCAGGTCACGGGTGGCGGGTGAGGCCCGGTGTCTACAAAGGACGAGGCTCCTGGTAAGGCAGCAGTCGACCAAGATCC
GATGCCGTAACGGGAGCCTCGCCATGCTGTCTTACCCTGCCGCGATTCCGCTGTCCACCCGGACCCTGAACCACCTCGCCGGCCTCATCCGCAGGCACCG
TCACCAGCACCGATCCCGCTGGCGACGGCTCGGGCCCGGCCGTCAGGCGCTGCTCGCCCTGGCCCACCTGCGCAACGGTGACACCTACACCCGGCTGGCC
GGCGGGTTCGAGATCGGCGTGGCGACCGCCTGGCGGTACGTCCGCGAGGCCGTCGACCTCCTCGCCGCAGCCGCCGACGACCTGTCCGCCGCCATGCGCA
GGATCCGCCGCCTGGCCTATGTCGTCCTCGACGGCACCCTCATCCCGATGGACCGCGTCGCGGGCCAGAAGCCCTACTACTCCGGCAAACACCGCCGTCA
TGGCATGAACGTGCAGGTCATCGCCGACCCGGCCGGTCGGCTCGTCTGGGCCTCGCCCGCGCTCCCCGGCTCCGTCCACGACCTGACCGCTGCCCGCGCG
CGCGACCTGATCCAAGCGTTGAGTAGGGACAACGTGATGACCTTCGTCGACAAGGCGTACCAAGGCGCGGGCGGCAGCATCCGGACACCGTTCAAACGCC
ACCGATACCGGCAGCGGCTGTCACGAGGGCAGAAGGCCGTGAACCGTGCCCACGCCCGGATCCGCGCCATCGGCGAACGCGCCAACGCCACCCTCAAGGG
CTGGAAGATCCTGACCAAACTGCACTGCTGCCCCCGCCGCGCCACCGCGATCGTGCGGGCCACCCTCGTCCTTCACCACGTCGAAGCCAAGCGTCACGCA
GGATGAAACTGCTC
GATGCCGTAACGGGAGCCTCGCCATGCTGTCTTACCCTGCCGCGATTCCGCTGTCCACCCGGACCCTGAACCACCTCGCCGGCCTCATCCGCAGGCACCG
TCACCAGCACCGATCCCGCTGGCGACGGCTCGGGCCCGGCCGTCAGGCGCTGCTCGCCCTGGCCCACCTGCGCAACGGTGACACCTACACCCGGCTGGCC
GGCGGGTTCGAGATCGGCGTGGCGACCGCCTGGCGGTACGTCCGCGAGGCCGTCGACCTCCTCGCCGCAGCCGCCGACGACCTGTCCGCCGCCATGCGCA
GGATCCGCCGCCTGGCCTATGTCGTCCTCGACGGCACCCTCATCCCGATGGACCGCGTCGCGGGCCAGAAGCCCTACTACTCCGGCAAACACCGCCGTCA
TGGCATGAACGTGCAGGTCATCGCCGACCCGGCCGGTCGGCTCGTCTGGGCCTCGCCCGCGCTCCCCGGCTCCGTCCACGACCTGACCGCTGCCCGCGCG
CGCGACCTGATCCAAGCGTTGAGTAGGGACAACGTGATGACCTTCGTCGACAAGGCGTACCAAGGCGCGGGCGGCAGCATCCGGACACCGTTCAAACGCC
ACCGATACCGGCAGCGGCTGTCACGAGGGCAGAAGGCCGTGAACCGTGCCCACGCCCGGATCCGCGCCATCGGCGAACGCGCCAACGCCACCCTCAAGGG
CTGGAAGATCCTGACCAAACTGCACTGCTGCCCCCGCCGCGCCACCGCGATCGTGCGGGCCACCCTCGTCCTTCACCACGTCGAAGCCAAGCGTCACGCA
GGATGAAACTGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
783 bp | 260 aa | 124 | 906 | + | No |
Chemistry : DDE
ORF sequence :
MLSYPAAIPLSTRTLNHLAGLIRRHRHQHRSRWRRLGPGRQALLALAHLRNGDTYTRLAGGFEIGVATAWRYVREAVDLLAAAADDLSAAMRRIRRLAYV
VLDGTLIPMDRVAGQKPYYSGKHRRHGMNVQVIADPAGRLVWASPALPGSVHDLTAARARDLIQALSRDNVMTFVDKAYQGAGGSIRTPFKRHRYRQRLS
RGQKAVNRAHARIRAIGERANATLKGWKILTKLHCCPRRATAIVRATLVLHHVEAKRHAG
VLDGTLIPMDRVAGQKPYYSGKHRRHGMNVQVIADPAGRLVWASPALPGSVHDLTAARARDLIQALSRDNVMTFVDKAYQGAGGSIRTPFKRHRYRQRLS
RGQKAVNRAHARIRAIGERANATLKGWKILTKLHCCPRRATAIVRATLVLHHVEAKRHAG
Blast result :
Comments
ISMau1 is 85% aa similar to ISSar1.
References
1] ISfinder annotation (2010).
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Larimer,F., Land,M.L., Hauser,L. and Hirsch,A.M. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Larimer,F., Land,M.L., Hauser,L. and Hirsch,A.M. (2009) Direct submission GenBank.