ISMae25
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010296 | ND | Microcystis aeruginosa | Microcystis aeruginosa NIES-843 |
DNA section
IS Length : 1246 bp
Ends
IR Length : 26/30
IRL : TGGACTGTTTCAGCTAAAATAGGGCAATAGCTCGAACAAGCAGAGGACAT
IRR : TGGACTGTTTCAGCTAATTTGGTGCAATAGATTCTCCCGATTCCTCCTCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACAATTATTT | GTAG | GATGGGTTAG | 4 |
CTAACGCACC | CTAC | CTACTCATTT | 4 |
TTAACGCACC | CTAC | GAAAGCTTAT | 4 |
CTAACCCATC | CTAC | AAATAATTGT | 4 |
TCAAACCAAT | GTAG | GGGGAAATAA | 4 |
DNA sequence
TGGACTGTTTCAGCTAAAATAGGGCAATAGCTCGAACAAGCAGAGGACATCAATCATGGGAAGAGGTCGGCGAGATAAAGTCAATCTAACAGGGGAACAA
AGAGAAAACCTCGAACAAATCAGTCGTAATGGCTATGCACCAGCTAAAAAAATTCTCCACGCTCGGATTTTGCTGATGTGTGACGAGGGAGAACAGGCGA
AAAGGAAATGGACAGATGAAGAAATAGGCGAAGCTTTAGAAGTTCATAGAAATACAGTGGGACGTATTCGTCAAAGATTTCTTCAAAAAGGCGAAAAACC
AGCATTAGAACGGAAATCGAGAAAAACTCCCCCCACTCCGGCAAAAGTTGATGGAGCCGCCGCCGCCCAAATCATTGCCCTGTGCTGTTCGGAGCCACCA
TCTGGCCGAGCCGAGTGGACAATCCGACTATTAACCTCGGAACTCAAACAAAGACAAATTATCACCGAGATTTCCAGTCCAACGGTGTGGCGTACTCTAA
AAAAAACCAATTACGCCCTTGGAAAACCCAAAGATACTGTATTCCGGAACAGGATTTAGCCCGATTTGTTGCCCAGATGGAAGTTGTCCTTGACCTGTAT
GGCACTCAGCCATCGGAAGAAGAACCGTTAATCGCGATGGATGAAGCATCAAAGCAACTACTTGGAGAAGTTTACCCTCCGATACCCATGCAACCTGGAC
AAGATAAAAAAGAAGACTATCACTATAGTCGTGAAGGGGTTCAAGCCTTGTTCATGTTTTTTGACCCCCATCGAGGATGGAGACGGGTGAGTAACCGAGA
TAGTCGAACCCGAATAGATTGGGCAGAAGAAATTCGTCAATTATTGGATGTGGACTATCCAAAGGCTCGAAAAGTCAAGCTCGTCTGTGATAATCTCAAC
ACTCATAACATAGCCTCGCTTTATGAAGCATTTCCAGCACCCGTTGCTCATCGTTTAGCTAGAAGACTGGAAATTTATTACACACCTCGTAATGGTAGCT
GGTTAAATGTAGCCGAAACTGAACTAAGCGTCTTATCGAGGCAATGTTTAGATAGAAGGATTTCTAGCAAGGAAGAACTGAAAAGGGAGATAGAAACCTG
GCAAAAAGAACGTAATCAGACTGCATCTACAGTAATATGGACGTTTACGACCAGCGATGCTAGGGTCAAGCTGAAACATCTTTATCCTGTGTTTGAGGAG
GAGGAATCGGGAGAATCTATTGCACCAAATTAGCTGAAACAGTCCA
AGAGAAAACCTCGAACAAATCAGTCGTAATGGCTATGCACCAGCTAAAAAAATTCTCCACGCTCGGATTTTGCTGATGTGTGACGAGGGAGAACAGGCGA
AAAGGAAATGGACAGATGAAGAAATAGGCGAAGCTTTAGAAGTTCATAGAAATACAGTGGGACGTATTCGTCAAAGATTTCTTCAAAAAGGCGAAAAACC
AGCATTAGAACGGAAATCGAGAAAAACTCCCCCCACTCCGGCAAAAGTTGATGGAGCCGCCGCCGCCCAAATCATTGCCCTGTGCTGTTCGGAGCCACCA
TCTGGCCGAGCCGAGTGGACAATCCGACTATTAACCTCGGAACTCAAACAAAGACAAATTATCACCGAGATTTCCAGTCCAACGGTGTGGCGTACTCTAA
AAAAAACCAATTACGCCCTTGGAAAACCCAAAGATACTGTATTCCGGAACAGGATTTAGCCCGATTTGTTGCCCAGATGGAAGTTGTCCTTGACCTGTAT
GGCACTCAGCCATCGGAAGAAGAACCGTTAATCGCGATGGATGAAGCATCAAAGCAACTACTTGGAGAAGTTTACCCTCCGATACCCATGCAACCTGGAC
AAGATAAAAAAGAAGACTATCACTATAGTCGTGAAGGGGTTCAAGCCTTGTTCATGTTTTTTGACCCCCATCGAGGATGGAGACGGGTGAGTAACCGAGA
TAGTCGAACCCGAATAGATTGGGCAGAAGAAATTCGTCAATTATTGGATGTGGACTATCCAAAGGCTCGAAAAGTCAAGCTCGTCTGTGATAATCTCAAC
ACTCATAACATAGCCTCGCTTTATGAAGCATTTCCAGCACCCGTTGCTCATCGTTTAGCTAGAAGACTGGAAATTTATTACACACCTCGTAATGGTAGCT
GGTTAAATGTAGCCGAAACTGAACTAAGCGTCTTATCGAGGCAATGTTTAGATAGAAGGATTTCTAGCAAGGAAGAACTGAAAAGGGAGATAGAAACCTG
GCAAAAAGAACGTAATCAGACTGCATCTACAGTAATATGGACGTTTACGACCAGCGATGCTAGGGTCAAGCTGAAACATCTTTATCCTGTGTTTGAGGAG
GAGGAATCGGGAGAATCTATTGCACCAAATTAGCTGAAACAGTCCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
504 bp | 167 aa | 56 | 559 | + | No |
Description : First part of the transposase
ORF sequence :
MGRGRRDKVNLTGEQRENLEQISRNGYAPAKKILHARILLMCDEGEQAKRKWTDEEIGEALEVHRNTVGRIRQRFLQKGEKPALERKSRKTPPTPAKVDG
AAAAQIIALCCSEPPSGRAEWTIRLLTSELKQRQIITEISSPTVWRTLKKTNYALGKPKDTVFRNRI
AAAAQIIALCCSEPPSGRAEWTIRLLTSELKQRQIITEISSPTVWRTLKKTNYALGKPKDTVFRNRI
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
882 bp | 293 aa | 352 | 1233 | + | No |
Description : Second part of the transposase
ORF sequence :
WSRRRPNHCPVLFGATIWPSRVDNPTINLGTQTKTNYHRDFQSNGVAYSKKNQLRPWKTQRYCIPEQDLARFVAQMEVVLDLYGTQPSEEEPLIAMDEAS
KQLLGEVYPPIPMQPGQDKKEDYHYSREGVQALFMFFDPHRGWRRVSNRDSRTRIDWAEEIRQLLDVDYPKARKVKLVCDNLNTHNIASLYEAFPAPVAH
RLARRLEIYYTPRNGSWLNVAETELSVLSRQCLDRRISSKEELKREIETWQKERNQTASTVIWTFTTSDARVKLKHLYPVFEEEESGESIAPN
KQLLGEVYPPIPMQPGQDKKEDYHYSREGVQALFMFFDPHRGWRRVSNRDSRTRIDWAEEIRQLLDVDYPKARKVKLVCDNLNTHNIASLYEAFPAPVAH
RLARRLEIYYTPRNGSWLNVAETELSVLSRQCLDRRISSKEELKREIETWQKERNQTASTVIWTFTTSDARVKLKHLYPVFEEEESGESIAPN
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1178 bp | 392 aa | 56 | 1233 | + | Yes |
Chemistry : DDE
ORF sequence :
MGRGRRDKVNLTGEQRENLEQISRNGYAPAKKILHARILLMCDEGEQAKRKWTDEEIGEALEVHRNTVGRIRQRFLQKGEKPALERKSRKTPPTPAKVDG
AAAAQIIALCCSEPPSGRAEWTIRLLTSELKQRQIITEISSPTVWRTLKKNQLRPWKTQRYCIPEQDLARFVAQMEVVLDLYGTQPSEEEPLIAMDEASK
QLLGEVYPPIPMQPGQDKKEDYHYSREGVQALFMFFDPHRGWRRVSNRDSRTRIDWAEEIRQLLDVDYPKARKVKLVCDNLNTHNIASLYEAFPAPVAHR
LARRLEIYYTPRNGSWLNVAETELSVLSRQCLDRRISSKEELKREIETWQKERNQTASTVIWTFTTSDARVKLKHLYPVFEEEESGESIAPN
AAAAQIIALCCSEPPSGRAEWTIRLLTSELKQRQIITEISSPTVWRTLKKNQLRPWKTQRYCIPEQDLARFVAQMEVVLDLYGTQPSEEEPLIAMDEASK
QLLGEVYPPIPMQPGQDKKEDYHYSREGVQALFMFFDPHRGWRRVSNRDSRTRIDWAEEIRQLLDVDYPKARKVKLVCDNLNTHNIASLYEAFPAPVAHR
LARRLEIYYTPRNGSWLNVAETELSVLSRQCLDRRISSKEELKREIETWQKERNQTASTVIWTFTTSDARVKLKHLYPVFEEEESGESIAPN
Blast result :
Comments
ISMae25 is 60% aa similar to ISArch4.
The third ORF is a putative ORFAB transposase reconstructed in silico by a possible -1 frameshift.
The third ORF is a putative ORFAB transposase reconstructed in silico by a possible -1 frameshift.
References
1] Modified and submitted by ISfinder (2010)
2] Kaneko,T., Nakajima,N., Okamoto,S., Suzuki,I., Tanabe,Y., Tamaoki,M., Nakamura,Y., Kasai,F., Watanabe,A., Kawashima,K., Kishida,Y., Ono,A., Shimizu,Y., Takahashi,C., Minami,C., Fujishiro,T., Kohara,M., Katoh,M., Nakazaki,N., Nakayama,S., Yamada,M., Tabata,S. and Watanabe,M.M. (2007) DNA Res. 14 (6), 247-256.
2] Kaneko,T., Nakajima,N., Okamoto,S., Suzuki,I., Tanabe,Y., Tamaoki,M., Nakamura,Y., Kasai,F., Watanabe,A., Kawashima,K., Kishida,Y., Ono,A., Shimizu,Y., Takahashi,C., Minami,C., Fujishiro,T., Kohara,M., Katoh,M., Nakazaki,N., Nakayama,S., Yamada,M., Tabata,S. and Watanabe,M.M. (2007) DNA Res. 14 (6), 247-256.