ISMgi3
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009338 | ND | Mycobacterium gilvum | Mycobacterium gilvum PYR-GCK |
DNA section
IS Length : 1770 bp
Ends
IR Length : 15
IRL : GAGACTGCTGAATTATTCCCGCGTGGCGGGTGGGGTTGTCCTGGGGTTTT
IRR : GAGACTGCTGAATTAGGTGTGTTGGGGGCGGGTGCCTCAGAGCGCTCTGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGGCTGGAGG | CTAG | GTCCGCGTGA | 4 |
CGTTGCTGGT | CTAG | GCCCAGGCGG | 4 |
CGGCCGGACG | CTAG | GTCGCGTCGG | 4 |
DNA sequence
GAGACTGCTGAATTATTCCCGCGTGGCGGGTGGGGTTGTCCTGGGGTTTTTGGGGATGATTGATGGGTGCAGGGTCGCTCTGATGATCAGCGTGAGTTCT
TGGATGCGGAGTCGGTTGCCGGGCATCTTCTGAAGTCTGACAGCGTGTTTGCCTTCCTGGCGGCGTACCGCAGGCAGTTGTTTCCCGAGGAGATGTTCGC
CGATCTGTTCCCGTCGCGGCGGGGCCGTCCCAGCGTGCCTGCCGAAGTGATGGCTTCGGTGATCACATTGCAGGCCTTGCACGGGCTCTCGGATAACGAG
ACCGTCGATGCAGTCACCTTCGACCTGCGGTGGAAAGCCGCCTGTGGGCTCCCGATCACCGCTGGAGCGTTTCATTCCACGACGCTGACGTACTGGCGGC
GCCGGTTGGCTGCCTCGGATCGCCCGAACCGGATCTTCGAGGCGGTCAAGACGGTCGTGGCCGCCACCGGGGCACTGACCGGCAAGACGCGGCGGGCCTT
GGACTCCACGATCCTCGACGACGCCGTAGCTACCCAAGACACCGTGACCCAGTTGATCGGCGCGATCCGCAGAGTGCGACGAGAGGTCCCCGGAGCGGGC
GAGGTGGTGGCGTCCCAGTGCAGCGCCCACGACTACGACGACCCGGGTAAACCGGCCATCACCTGGGATGACGCTGCGGCCCGGGAAATGTTGGTCAACG
CTTTGGTCACCGATGCCCATCGGCTGCTGGGTCATCTGCCTGACCAGGAACTCGGCGTCCGCGCCGCTGAGGCGGTGGCGTTGTTGGCGTTGATCGCCGG
CCAAGACGTCGAACCTGTTGACGATTCTGATGGCACCGATGGGCGGTGGCGTATCGCCCAGCGAGTCGCCCAGGATCGGGTGATTTCCACCGTCGATCCC
GATGCCCGCCACGCGCATAAAAGCGTGCACCGCCGCCAAGACGGATTCAAAGCCCACATTGCGGTCGAGCCCGATACTGGCCTGATTACCGACTGCGCCT
TGACCAAAGCCGGTGGTGCCGGCACCCACGACGCGGCAGTGGCTCCGCAGTTGCTGGCTGGTGAAAGTGCACCAGTGACAGTGCTGGCTGATTCGGCCTA
TGGCAGTGGGGATTTCCGCGCTCAACTCAGGAAGTCACGTCATCGCGATCGGGTCAAACCCGCACCCCTGCGCGCCGCTGTGCCCGGCGGGTTCACCATC
GATGACTTCACTGTTGATCACCGCGGCCATCGCGTGACCTGCCCAGCGGGAGTGGCTCGGAGCATCAGCGCACGCGGCAACGCCACCTTCGGGGCCGCGT
GCCGGGGCTGCGCGCTACGCCCACAGTGCACCACCAGCATCGACGGCAGAAGCCTGAAAATCGGGCCCCACGACGCACTTCAACGCGCTGCCCGTAAGAG
GTCACAAAAACCACGGTGGCTCAACGAATATCGTCAACACCGCCCGATGGTGGAACGCACCATCGCCTGGCTGACACGCGGCAACCGCAAAGTCCGCTAC
CGCGGGGTCACCCGCAACGATCAATGGCTGCATCATCGCGCCGCCGCGGTGAACTTACATCGCCTAATCACCCTGGGATTGACCCACACCGGCGCTGGCT
GGGCCATCGCCTGACCCCGGCACAGCCGGGTCTTGGCTCACCGGGCACCACATGCACCCTCAACACGGCCGCGGTGACACTCGTAACTGTCGACTCCCGG
GTTTGACTCAACCACGGCCCACAGAGCGCTCTGAGGCACCCGCCCCCAACACACCTAATTCAGCAGTCTC
TGGATGCGGAGTCGGTTGCCGGGCATCTTCTGAAGTCTGACAGCGTGTTTGCCTTCCTGGCGGCGTACCGCAGGCAGTTGTTTCCCGAGGAGATGTTCGC
CGATCTGTTCCCGTCGCGGCGGGGCCGTCCCAGCGTGCCTGCCGAAGTGATGGCTTCGGTGATCACATTGCAGGCCTTGCACGGGCTCTCGGATAACGAG
ACCGTCGATGCAGTCACCTTCGACCTGCGGTGGAAAGCCGCCTGTGGGCTCCCGATCACCGCTGGAGCGTTTCATTCCACGACGCTGACGTACTGGCGGC
GCCGGTTGGCTGCCTCGGATCGCCCGAACCGGATCTTCGAGGCGGTCAAGACGGTCGTGGCCGCCACCGGGGCACTGACCGGCAAGACGCGGCGGGCCTT
GGACTCCACGATCCTCGACGACGCCGTAGCTACCCAAGACACCGTGACCCAGTTGATCGGCGCGATCCGCAGAGTGCGACGAGAGGTCCCCGGAGCGGGC
GAGGTGGTGGCGTCCCAGTGCAGCGCCCACGACTACGACGACCCGGGTAAACCGGCCATCACCTGGGATGACGCTGCGGCCCGGGAAATGTTGGTCAACG
CTTTGGTCACCGATGCCCATCGGCTGCTGGGTCATCTGCCTGACCAGGAACTCGGCGTCCGCGCCGCTGAGGCGGTGGCGTTGTTGGCGTTGATCGCCGG
CCAAGACGTCGAACCTGTTGACGATTCTGATGGCACCGATGGGCGGTGGCGTATCGCCCAGCGAGTCGCCCAGGATCGGGTGATTTCCACCGTCGATCCC
GATGCCCGCCACGCGCATAAAAGCGTGCACCGCCGCCAAGACGGATTCAAAGCCCACATTGCGGTCGAGCCCGATACTGGCCTGATTACCGACTGCGCCT
TGACCAAAGCCGGTGGTGCCGGCACCCACGACGCGGCAGTGGCTCCGCAGTTGCTGGCTGGTGAAAGTGCACCAGTGACAGTGCTGGCTGATTCGGCCTA
TGGCAGTGGGGATTTCCGCGCTCAACTCAGGAAGTCACGTCATCGCGATCGGGTCAAACCCGCACCCCTGCGCGCCGCTGTGCCCGGCGGGTTCACCATC
GATGACTTCACTGTTGATCACCGCGGCCATCGCGTGACCTGCCCAGCGGGAGTGGCTCGGAGCATCAGCGCACGCGGCAACGCCACCTTCGGGGCCGCGT
GCCGGGGCTGCGCGCTACGCCCACAGTGCACCACCAGCATCGACGGCAGAAGCCTGAAAATCGGGCCCCACGACGCACTTCAACGCGCTGCCCGTAAGAG
GTCACAAAAACCACGGTGGCTCAACGAATATCGTCAACACCGCCCGATGGTGGAACGCACCATCGCCTGGCTGACACGCGGCAACCGCAAAGTCCGCTAC
CGCGGGGTCACCCGCAACGATCAATGGCTGCATCATCGCGCCGCCGCGGTGAACTTACATCGCCTAATCACCCTGGGATTGACCCACACCGGCGCTGGCT
GGGCCATCGCCTGACCCCGGCACAGCCGGGTCTTGGCTCACCGGGCACCACATGCACCCTCAACACGGCCGCGGTGACACTCGTAACTGTCGACTCCCGG
GTTTGACTCAACCACGGCCCACAGAGCGCTCTGAGGCACCCGCCCCCAACACACCTAATTCAGCAGTCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1548 bp | 515 aa | 67 | 1614 | + | No |
Chemistry : DDE
ORF sequence :
MQGRSDDQREFLDAESVAGHLLKSDSVFAFLAAYRRQLFPEEMFADLFPSRRGRPSVPAEVMASVITLQALHGLSDNETVDAVTFDLRWKAACGLPITAG
AFHSTTLTYWRRRLAASDRPNRIFEAVKTVVAATGALTGKTRRALDSTILDDAVATQDTVTQLIGAIRRVRREVPGAGEVVASQCSAHDYDDPGKPAITW
DDAAAREMLVNALVTDAHRLLGHLPDQELGVRAAEAVALLALIAGQDVEPVDDSDGTDGRWRIAQRVAQDRVISTVDPDARHAHKSVHRRQDGFKAHIAV
EPDTGLITDCALTKAGGAGTHDAAVAPQLLAGESAPVTVLADSAYGSGDFRAQLRKSRHRDRVKPAPLRAAVPGGFTIDDFTVDHRGHRVTCPAGVARSI
SARGNATFGAACRGCALRPQCTTSIDGRSLKIGPHDALQRAARKRSQKPRWLNEYRQHRPMVERTIAWLTRGNRKVRYRGVTRNDQWLHHRAAAVNLHRL
ITLGLTHTGAGWAIA
AFHSTTLTYWRRRLAASDRPNRIFEAVKTVVAATGALTGKTRRALDSTILDDAVATQDTVTQLIGAIRRVRREVPGAGEVVASQCSAHDYDDPGKPAITW
DDAAAREMLVNALVTDAHRLLGHLPDQELGVRAAEAVALLALIAGQDVEPVDDSDGTDGRWRIAQRVAQDRVISTVDPDARHAHKSVHRRQDGFKAHIAV
EPDTGLITDCALTKAGGAGTHDAAVAPQLLAGESAPVTVLADSAYGSGDFRAQLRKSRHRDRVKPAPLRAAVPGGFTIDDFTVDHRGHRVTCPAGVARSI
SARGNATFGAACRGCALRPQCTTSIDGRSLKIGPHDALQRAARKRSQKPRWLNEYRQHRPMVERTIAWLTRGNRKVRYRGVTRNDQWLHHRAAAVNLHRL
ITLGLTHTGAGWAIA
Blast result :
Comments
ISMgi3 is 81% aa similar to ISMgi2.
References
1] ISfinder annotation (2010)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Miller,C. and Richardson,P. (2007) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Miller,C. and Richardson,P. (2007) Direct submission GenBank.